Wall clock time and date at job start Fri Apr 10 2020 14:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 O 1.21281 * 120.00333 * 2 1 4 4 N 1.34778 * 120.00190 * 180.02562 * 2 1 3 5 5 C 1.46507 * 119.99811 * 355.33483 * 4 2 1 6 6 C 1.46502 * 120.00380 * 175.33500 * 4 2 1 7 7 C 1.52995 * 109.47065 * 90.00091 * 6 4 2 8 8 H 1.09009 * 109.46958 * 304.99742 * 7 6 4 9 9 O 1.42902 * 109.47588 * 65.00083 * 7 6 4 10 10 C 1.52998 * 109.47043 * 185.00058 * 7 6 4 11 11 N 1.46911 * 109.47121 * 179.97438 * 10 7 6 12 12 C 1.46901 * 110.99628 * 180.02562 * 11 10 7 13 13 C 1.50707 * 109.46740 * 180.02562 * 12 11 10 14 14 C 1.38298 * 119.92432 * 269.72726 * 13 12 11 15 15 C 1.38103 * 120.06490 * 179.72700 * 14 13 12 16 16 C 1.38873 * 119.93148 * 0.56670 * 15 14 13 17 17 O 1.35755 * 120.07412 * 179.68524 * 16 15 14 18 18 C 1.34823 * 117.00258 * 174.73016 * 17 16 15 19 19 H 1.07997 * 120.00216 * 5.03554 * 18 17 16 20 20 C 1.38654 * 120.00082 * 185.02760 * 18 17 16 21 21 N 1.31555 * 120.00030 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 119.99772 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47146 * 90.00019 * 22 20 18 24 24 H 1.48503 * 109.46804 * 209.99834 * 22 20 18 25 25 H 1.48497 * 109.47191 * 329.99447 * 22 20 18 26 26 C 1.38886 * 119.86074 * 359.70571 * 16 15 14 27 27 C 1.38094 * 119.92925 * 359.97438 * 26 16 15 28 28 H 1.09000 * 109.47368 * 185.23525 * 1 2 3 29 29 H 1.09006 * 109.47239 * 305.22836 * 1 2 3 30 30 H 1.08995 * 109.47373 * 65.22801 * 1 2 3 31 31 H 1.09004 * 109.46940 * 275.50951 * 5 4 2 32 32 H 1.09001 * 109.46911 * 35.50557 * 5 4 2 33 33 H 1.08996 * 109.47323 * 155.50926 * 5 4 2 34 34 H 1.08996 * 109.47023 * 330.00201 * 6 4 2 35 35 H 1.09001 * 109.46759 * 209.99830 * 6 4 2 36 36 H 0.96701 * 113.99805 * 59.99631 * 9 7 6 37 37 H 1.09000 * 109.47517 * 299.99444 * 10 7 6 38 38 H 1.09003 * 109.47183 * 59.99830 * 10 7 6 39 39 H 1.00896 * 110.99448 * 56.05100 * 11 10 7 40 40 H 1.08999 * 109.47315 * 299.99681 * 12 11 10 41 41 H 1.08999 * 109.47147 * 60.00381 * 12 11 10 42 42 H 1.07996 * 119.97079 * 359.97438 * 14 13 12 43 43 H 1.08002 * 120.03727 * 180.27009 * 15 14 13 44 44 H 0.97003 * 119.99506 * 180.02562 * 21 20 18 45 45 H 1.07997 * 120.03160 * 179.97438 * 26 16 15 46 46 H 1.08004 * 119.96762 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.4519 -2.4339 0.1021 6 6 3.6422 -1.1693 -0.1037 7 6 4.2525 -1.1120 1.2981 8 1 3.8557 -0.2485 1.8321 9 8 3.9222 -2.3058 2.0107 10 6 5.7735 -0.9885 1.1874 11 7 6.3595 -0.9329 2.5335 12 6 7.8221 -0.8133 2.4663 13 6 8.3863 -0.7598 3.8627 14 6 8.5519 0.4596 4.4937 15 6 9.0634 0.5116 5.7754 16 6 9.4226 -0.6614 6.4262 17 8 9.9317 -0.6132 7.6838 18 6 10.1572 -1.7917 8.2985 19 1 10.0109 -2.7174 7.7619 20 6 10.5771 -1.8154 9.6198 21 7 10.7975 -2.9653 10.2194 22 14 10.8297 -0.2142 10.5482 23 1 9.5626 0.1751 11.2176 24 1 11.8930 -0.3963 11.5688 25 1 11.2345 0.8514 9.5965 26 6 9.2604 -1.8840 5.7877 27 6 8.7422 -1.9298 4.5085 28 1 -0.3634 -1.0234 0.0938 29 1 -0.3634 0.5928 0.8395 30 1 -0.3634 0.4306 -0.9330 31 1 1.2579 -2.6575 1.1512 32 1 0.5058 -2.3531 -0.4331 33 1 2.0497 -3.2336 -0.3353 34 1 3.9672 -0.3012 -0.6772 35 1 3.9696 -2.0798 -0.6056 36 1 4.2445 -3.1157 1.5920 37 1 6.1703 -1.8520 0.6535 38 1 6.0255 -0.0779 0.6439 39 1 6.0867 -1.7360 3.0799 40 1 8.2334 -1.6755 1.9414 41 1 8.0878 0.0985 1.9315 42 1 8.2772 1.3719 3.9851 43 1 9.1885 1.4639 6.2694 44 1 11.0909 -2.9818 11.1439 45 1 9.5392 -2.7979 6.2911 46 1 8.6161 -2.8802 4.0112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486255228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:36 Heat of formation + Delta-G solvation = -80.962717 kcal Electronic energy + Delta-G solvation = -26111.484112 eV Core-core repulsion = 22195.171622 eV Total energy + Delta-G solvation = -3916.312489 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.32236 -39.22388 -38.25394 -37.01391 -35.67229 -34.83309 -32.40392 -31.72821 -30.37887 -30.18256 -28.91192 -27.19238 -25.88622 -24.87727 -23.34738 -22.05399 -21.93187 -20.34695 -19.70506 -17.89040 -17.50808 -17.35518 -17.07675 -16.59171 -16.00167 -15.88668 -15.08393 -14.90508 -14.74809 -14.47124 -14.05294 -13.89815 -13.74544 -13.64512 -13.55201 -13.46858 -13.12927 -12.75103 -12.61560 -12.55943 -12.47124 -12.30571 -12.13926 -11.92738 -11.71896 -11.32511 -11.28364 -10.89444 -10.74549 -10.64282 -10.53315 -10.15576 -10.12443 -9.37290 -8.98409 -8.85806 -8.40612 -8.22349 -7.30416 -6.40779 -4.07235 2.15595 2.19089 2.26076 2.58275 3.23277 3.27337 3.41950 3.95393 4.10735 4.25044 4.27998 4.52845 4.58523 4.64301 4.75975 4.78609 4.87716 4.88776 4.97168 5.01524 5.07470 5.12154 5.23121 5.28985 5.30403 5.38532 5.45332 5.47265 5.66823 5.76035 5.82551 5.85924 6.05350 6.14833 6.36407 6.59875 6.80947 6.92892 6.96360 7.10381 7.26754 7.29950 7.33990 7.47596 7.63500 7.78985 7.81234 8.05110 8.94689 9.57515 10.66840 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.022606 B = 0.001933 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.319531 B =14481.603842 C =14538.569019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.510 3.490 3 O -0.544 6.544 4 N -0.612 5.612 5 C 0.080 3.920 6 C 0.085 3.915 7 C 0.094 3.906 8 H 0.111 0.889 9 O -0.552 6.552 10 C 0.030 3.970 11 N -0.679 5.679 12 C 0.117 3.883 13 C -0.176 4.176 14 C -0.054 4.054 15 C -0.194 4.194 16 C 0.162 3.838 17 O -0.218 6.218 18 C -0.389 4.389 19 H 0.106 0.894 20 C 0.063 3.937 21 N -0.880 5.880 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.260 1.260 26 C -0.222 4.222 27 C -0.067 4.067 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.367 0.633 37 H 0.028 0.972 38 H 0.080 0.920 39 H 0.349 0.651 40 H 0.027 0.973 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.117 0.883 44 H 0.279 0.721 45 H 0.132 0.868 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.716 -0.416 -23.628 29.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.299 3.701 3 O -0.421 6.421 4 N -0.345 5.345 5 C -0.063 4.063 6 C -0.039 4.039 7 C 0.033 3.967 8 H 0.129 0.871 9 O -0.356 6.356 10 C -0.100 4.100 11 N -0.312 5.312 12 C -0.011 4.011 13 C -0.178 4.178 14 C -0.073 4.073 15 C -0.213 4.213 16 C 0.109 3.891 17 O -0.123 6.123 18 C -0.465 4.465 19 H 0.123 0.877 20 C -0.140 4.140 21 N -0.518 5.518 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.241 4.241 27 C -0.086 4.086 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.213 0.787 37 H 0.047 0.953 38 H 0.099 0.901 39 H 0.168 0.832 40 H 0.046 0.954 41 H 0.089 0.911 42 H 0.131 0.869 43 H 0.135 0.865 44 H 0.089 0.911 45 H 0.150 0.850 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.648 1.313 -22.806 28.867 hybrid contribution 0.678 -1.030 -0.138 1.241 sum -16.971 0.283 -22.944 28.539 Atomic orbital electron populations 1.21988 0.91735 1.04690 1.05279 1.20862 0.90754 0.83077 0.75406 1.90742 1.70655 1.31113 1.49569 1.47775 1.06618 1.06765 1.73375 1.21882 0.96954 0.84984 1.02518 1.22189 0.80044 1.03722 0.97896 1.22441 0.93132 0.88982 0.92110 0.87091 1.86695 1.80511 1.15627 1.52784 1.22557 0.94430 1.01120 0.91941 1.60440 1.09311 1.48872 1.12579 1.20648 0.86237 1.00049 0.94167 1.19165 1.08462 0.93497 0.96640 1.20477 0.96646 0.96682 0.93446 1.20227 1.08452 0.96469 0.96153 1.19145 0.91196 0.93400 0.85332 1.83575 1.71151 1.33861 1.23675 1.20763 1.46444 0.83298 0.95965 0.87655 1.24472 0.95773 0.98326 0.95473 1.69648 1.44352 1.24648 1.13140 0.86176 0.78342 0.82975 0.79383 1.19857 1.20805 1.18365 1.21230 1.08084 0.98468 0.96298 1.20627 0.97159 0.96584 0.94198 0.90006 0.88658 0.88816 0.91699 0.91032 0.91036 0.88934 0.90258 0.78730 0.95345 0.90119 0.83170 0.95445 0.91108 0.86851 0.86540 0.91074 0.85015 0.87693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.95 10.00 36.00 0.36 -0.59 16 2 C 0.51 4.78 7.77 -10.99 -0.09 4.70 16 3 O -0.54 -7.54 16.73 5.56 0.09 -7.45 16 4 N -0.61 -4.46 2.84 -181.57 -0.52 -4.97 16 5 C 0.08 0.32 9.60 59.85 0.57 0.89 16 6 C 0.09 0.61 5.07 -4.04 -0.02 0.59 16 7 C 0.09 0.86 3.48 -26.73 -0.09 0.76 16 8 H 0.11 1.41 8.14 -51.92 -0.42 0.99 16 9 O -0.55 -4.91 12.23 -35.23 -0.43 -5.34 16 10 C 0.03 0.28 5.39 -3.82 -0.02 0.26 16 11 N -0.68 -8.50 6.49 -115.05 -0.75 -9.25 16 12 C 0.12 1.54 5.81 -4.97 -0.03 1.51 16 13 C -0.18 -2.95 5.40 -104.58 -0.56 -3.51 16 14 C -0.05 -0.95 9.69 -39.61 -0.38 -1.33 16 15 C -0.19 -3.96 9.99 -39.40 -0.39 -4.35 16 16 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 17 O -0.22 -5.84 8.59 0.05 0.00 -5.84 16 18 C -0.39 -11.08 9.95 30.89 0.31 -10.77 16 19 H 0.11 3.05 5.44 -52.49 -0.29 2.77 16 20 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 21 N -0.88 -25.57 13.96 55.48 0.77 -24.79 16 22 Si 0.91 21.95 28.62 -169.99 -4.86 17.08 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 26 C -0.22 -4.82 9.17 -39.39 -0.36 -5.18 16 27 C -0.07 -1.21 9.69 -39.61 -0.38 -1.59 16 28 H 0.08 0.24 5.49 -51.93 -0.29 -0.04 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.16 6.14 -51.93 -0.32 -0.16 16 33 H 0.07 0.18 7.83 -51.93 -0.41 -0.22 16 34 H 0.09 0.78 7.49 -51.93 -0.39 0.39 16 35 H 0.08 0.36 7.86 -51.93 -0.41 -0.05 16 36 H 0.37 1.89 9.05 45.56 0.41 2.30 16 37 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.35 4.56 8.11 -39.29 -0.32 4.24 16 40 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 41 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 42 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 43 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 44 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.13 3.01 5.64 -52.49 -0.30 2.71 16 46 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 384.48 15.07 5.79 5.79 Total: -1.00 -34.08 384.48 -7.42 -41.50 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.08 Total: 6.66 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -1.45 Total: -13.39 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: -0.49 Total: -39.01 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.34 Total: -18.63 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.86 Total: 17.08 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.08 -7.42 -41.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486255228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.463 kcal (2) G-P(sol) polarization free energy of solvation -34.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds