Wall clock time and date at job start Fri Apr 10 2020 14:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21274 * 119.99596 * 2 1 4 4 N 1.34773 * 119.99676 * 179.72771 * 2 1 3 5 5 C 1.46495 * 120.00552 * 5.40976 * 4 2 1 6 6 C 1.46502 * 119.99552 * 185.41218 * 4 2 1 7 7 C 1.53004 * 109.47011 * 90.00373 * 6 4 2 8 8 H 1.08997 * 109.47768 * 59.99930 * 7 6 4 9 9 O 1.42903 * 109.46745 * 299.99514 * 7 6 4 10 10 C 1.53002 * 109.47054 * 180.02562 * 7 6 4 11 11 N 1.46897 * 109.47403 * 184.99808 * 10 7 6 12 12 C 1.46897 * 111.00549 * 179.97438 * 11 10 7 13 13 C 1.50695 * 109.47356 * 179.97438 * 12 11 10 14 14 C 1.38304 * 119.93060 * 269.72609 * 13 12 11 15 15 C 1.38098 * 120.06917 * 179.72264 * 14 13 12 16 16 C 1.38882 * 119.93003 * 0.57426 * 15 14 13 17 17 O 1.35744 * 120.07089 * 179.67728 * 16 15 14 18 18 C 1.34835 * 117.00155 * 173.94009 * 17 16 15 19 19 H 1.07994 * 119.99855 * 2.97522 * 18 17 16 20 20 C 1.38654 * 120.00346 * 182.97685 * 18 17 16 21 21 N 1.31563 * 119.99561 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00089 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47259 * 59.99985 * 22 20 18 24 24 H 1.48503 * 109.46863 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46938 * 299.99512 * 22 20 18 26 26 C 1.38878 * 119.86068 * 359.70433 * 16 15 14 27 27 C 1.38105 * 119.93079 * 359.97438 * 26 16 15 28 28 H 1.08995 * 109.47082 * 95.40238 * 1 2 3 29 29 H 1.09005 * 109.46649 * 215.39887 * 1 2 3 30 30 H 1.08999 * 109.46945 * 335.39721 * 1 2 3 31 31 H 1.09007 * 109.47152 * 84.78463 * 5 4 2 32 32 H 1.09003 * 109.47594 * 204.78450 * 5 4 2 33 33 H 1.09001 * 109.47154 * 324.78755 * 5 4 2 34 34 H 1.09007 * 109.46906 * 209.99623 * 6 4 2 35 35 H 1.09000 * 109.47568 * 330.00118 * 6 4 2 36 36 H 0.96696 * 114.00078 * 300.00214 * 9 7 6 37 37 H 1.08999 * 109.46798 * 304.99564 * 10 7 6 38 38 H 1.09002 * 109.47465 * 64.99304 * 10 7 6 39 39 H 1.00903 * 110.99764 * 303.95299 * 11 10 7 40 40 H 1.08998 * 109.47066 * 300.00125 * 12 11 10 41 41 H 1.09000 * 109.46687 * 59.99757 * 12 11 10 42 42 H 1.07999 * 119.96330 * 359.97438 * 14 13 12 43 43 H 1.07994 * 120.03788 * 180.26941 * 15 14 13 44 44 H 0.97001 * 119.99860 * 180.02562 * 21 20 18 45 45 H 1.08005 * 120.03517 * 179.97438 * 26 16 15 46 46 H 1.08003 * 119.96268 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0055 5 6 1.4534 -2.4336 -0.1080 6 6 3.6410 -1.1694 0.1252 7 6 4.0315 -1.2315 1.6033 8 1 3.6291 -2.1419 2.0476 9 8 3.4994 -0.0936 2.2846 10 6 5.5564 -1.2332 1.7284 11 7 5.9320 -1.4131 3.1370 12 6 7.3924 -1.4204 3.2958 13 6 7.7387 -1.6059 4.7506 14 6 7.8920 -0.5021 5.5697 15 6 8.2037 -0.6690 6.9046 16 6 8.3749 -1.9466 7.4217 17 8 8.6878 -2.1137 8.7320 18 6 8.7163 -3.3786 9.1981 19 1 8.5431 -4.2058 8.5257 20 6 8.9678 -3.6174 10.5406 21 7 9.1792 -2.6096 11.3595 22 14 9.0079 -5.3698 11.1860 23 1 10.0689 -6.1328 10.4811 24 1 9.2938 -5.3541 12.6432 25 1 7.6921 -6.0154 10.9473 26 6 8.2259 -3.0527 6.5953 27 6 7.9076 -2.8794 5.2627 28 1 -0.3633 -0.0967 -1.0231 29 1 -0.3633 -0.8378 0.5953 30 1 -0.3633 0.9344 0.4278 31 1 1.2757 -2.6576 -1.1600 32 1 2.0439 -3.2334 0.3390 33 1 0.4990 -2.3523 0.4123 34 1 4.0468 -2.0375 -0.3945 35 1 4.0434 -0.2590 -0.3190 36 1 3.8152 0.7535 1.9414 37 1 5.9686 -2.0495 1.1353 38 1 5.9518 -0.2846 1.3651 39 1 5.5085 -0.7047 3.7175 40 1 7.8170 -2.2382 2.7136 41 1 7.8008 -0.4733 2.9433 42 1 7.7638 0.4913 5.1657 43 1 8.3190 0.1931 7.5447 44 1 9.3555 -2.7766 12.2986 45 1 8.3589 -4.0475 6.9944 46 1 7.7913 -3.7393 4.6197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486255229.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:40 Heat of formation + Delta-G solvation = -85.130985 kcal Electronic energy + Delta-G solvation = -26123.332486 eV Core-core repulsion = 22206.839247 eV Total energy + Delta-G solvation = -3916.493239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.28231 -39.06883 -38.06557 -36.83168 -35.66999 -34.77066 -32.30674 -31.55111 -30.25812 -30.10115 -28.78685 -27.24141 -25.76809 -24.96279 -23.28497 -21.96866 -21.84451 -20.37744 -19.69802 -17.95877 -17.51588 -17.06424 -16.89375 -16.46943 -16.19802 -15.74005 -15.06003 -14.71131 -14.63341 -14.45106 -14.11984 -13.91654 -13.62684 -13.56171 -13.37782 -13.32699 -13.11465 -12.84736 -12.67751 -12.63776 -12.41792 -12.25701 -11.94071 -11.80266 -11.53425 -11.27330 -11.23760 -10.82007 -10.72628 -10.60735 -10.42927 -10.40454 -10.08003 -9.31688 -8.96078 -8.81155 -8.37933 -8.14057 -7.16279 -6.43064 -4.01654 2.24645 2.28436 2.34086 2.62590 3.14303 3.15589 3.18305 3.98202 4.03148 4.18667 4.33404 4.58070 4.60790 4.75842 4.79243 4.84875 4.88798 4.95532 5.00346 5.10375 5.13342 5.19730 5.27679 5.27955 5.35835 5.45914 5.47694 5.50941 5.76719 5.80775 5.87045 5.91194 6.03321 6.23787 6.45487 6.72446 6.93057 6.98511 7.00786 7.12151 7.23993 7.41027 7.45609 7.48809 7.52937 7.84940 7.85592 8.01957 9.02427 9.72756 10.74941 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.021823 B = 0.001922 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.716412 B =14565.373438 C =14900.011853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.519 3.481 3 O -0.546 6.546 4 N -0.613 5.613 5 C 0.076 3.924 6 C 0.081 3.919 7 C 0.094 3.906 8 H 0.107 0.893 9 O -0.552 6.552 10 C 0.029 3.971 11 N -0.680 5.680 12 C 0.119 3.881 13 C -0.185 4.185 14 C -0.068 4.068 15 C -0.193 4.193 16 C 0.156 3.844 17 O -0.178 6.178 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.236 4.236 27 C -0.049 4.049 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.375 0.625 37 H 0.078 0.922 38 H 0.030 0.970 39 H 0.349 0.651 40 H 0.069 0.931 41 H 0.027 0.973 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.270 0.730 45 H 0.126 0.874 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.934 0.027 -24.618 28.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.308 3.692 3 O -0.423 6.423 4 N -0.347 5.347 5 C -0.067 4.067 6 C -0.042 4.042 7 C 0.033 3.967 8 H 0.124 0.876 9 O -0.357 6.357 10 C -0.102 4.102 11 N -0.313 5.313 12 C -0.009 4.009 13 C -0.187 4.187 14 C -0.087 4.087 15 C -0.213 4.213 16 C 0.102 3.898 17 O -0.081 6.081 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.498 5.498 22 Si 0.766 3.234 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.255 4.255 27 C -0.068 4.068 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.222 0.778 37 H 0.096 0.904 38 H 0.048 0.952 39 H 0.169 0.831 40 H 0.087 0.913 41 H 0.045 0.955 42 H 0.125 0.875 43 H 0.134 0.866 44 H 0.080 0.920 45 H 0.144 0.856 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.863 -0.370 -23.864 27.601 hybrid contribution 0.538 0.179 -0.155 0.588 sum -13.325 -0.191 -24.019 27.468 Atomic orbital electron populations 1.21952 0.91935 1.05210 1.04267 1.20715 0.90572 0.82993 0.74908 1.90672 1.70744 1.31122 1.49786 1.47713 1.06848 1.06686 1.73421 1.21872 0.97726 0.85493 1.01627 1.22199 0.80505 1.04029 0.97503 1.22386 0.92350 0.90759 0.91224 0.87560 1.86598 1.72170 1.16085 1.60822 1.22568 0.95424 1.00360 0.91816 1.60500 1.09597 1.55326 1.05862 1.20620 0.86927 0.99374 0.94026 1.19088 1.11438 0.93477 0.94669 1.20482 0.98345 0.97093 0.92742 1.20169 1.10515 0.95128 0.95459 1.19386 0.91665 0.93320 0.85422 1.83970 1.75024 1.30430 1.18711 1.21284 1.50621 0.81308 0.93558 0.89105 1.25290 0.96562 0.99861 0.94865 1.70035 1.44191 1.30850 1.04742 0.85775 0.79123 0.80390 0.78106 1.19528 1.20299 1.19493 1.21163 1.10906 0.99238 0.94202 1.20558 0.96193 0.95705 0.94324 0.89189 0.89782 0.88956 0.92464 0.90632 0.90731 0.89582 0.89495 0.77774 0.90361 0.95168 0.83136 0.91289 0.95520 0.87508 0.86608 0.91992 0.85610 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 9.55 36.01 0.34 -0.63 16 2 C 0.52 4.81 7.20 -10.98 -0.08 4.73 16 3 O -0.55 -7.11 15.81 3.86 0.06 -7.05 16 4 N -0.61 -4.52 2.83 -181.56 -0.51 -5.03 16 5 C 0.08 0.31 10.24 59.84 0.61 0.92 16 6 C 0.08 0.60 5.15 -4.04 -0.02 0.58 16 7 C 0.09 0.85 3.48 -26.73 -0.09 0.75 16 8 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 9 O -0.55 -6.29 11.78 -36.93 -0.44 -6.73 16 10 C 0.03 0.27 5.36 -3.82 -0.02 0.25 16 11 N -0.68 -8.60 6.49 -115.06 -0.75 -9.35 16 12 C 0.12 1.60 5.81 -4.98 -0.03 1.57 16 13 C -0.19 -3.20 5.40 -104.58 -0.56 -3.76 16 14 C -0.07 -1.23 9.69 -39.61 -0.38 -1.61 16 15 C -0.19 -4.17 9.99 -39.39 -0.39 -4.57 16 16 C 0.16 3.84 6.65 -39.11 -0.26 3.58 16 17 O -0.18 -5.16 9.76 0.05 0.00 -5.16 16 18 C -0.39 -11.07 9.49 30.89 0.29 -10.78 16 19 H 0.09 2.37 5.21 -52.49 -0.27 2.10 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 21 N -0.86 -25.55 13.67 55.48 0.76 -24.79 16 22 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 C -0.24 -5.22 9.16 -39.39 -0.36 -5.58 16 27 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.33 6.25 -51.93 -0.32 0.01 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.16 8.14 -51.92 -0.42 -0.26 16 32 H 0.07 0.27 8.03 -51.93 -0.42 -0.15 16 33 H 0.07 0.23 6.02 -51.93 -0.31 -0.08 16 34 H 0.09 0.45 8.07 -51.93 -0.42 0.03 16 35 H 0.09 0.74 7.36 -51.93 -0.38 0.35 16 36 H 0.37 3.85 8.62 45.56 0.39 4.24 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.35 4.78 8.28 -39.29 -0.33 4.46 16 40 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 41 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 42 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 43 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 44 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.13 2.78 5.66 -52.48 -0.30 2.48 16 46 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 384.55 15.07 5.80 5.80 Total: -1.00 -34.22 384.55 -7.68 -41.89 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.14 Total: 9.62 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -1.44 Total: -14.87 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: -0.50 Total: -39.17 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.37 Total: -18.94 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.22 -7.68 -41.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486255229.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.239 kcal (2) G-P(sol) polarization free energy of solvation -34.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds