Wall clock time and date at job start Fri Apr 10 2020 14:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21274 * 119.99596 * 2 1 4 4 N 1.34773 * 119.99676 * 179.72771 * 2 1 3 5 5 C 1.46495 * 120.00552 * 5.40976 * 4 2 1 6 6 C 1.46502 * 119.99552 * 185.41218 * 4 2 1 7 7 C 1.53004 * 109.47011 * 90.00373 * 6 4 2 8 8 H 1.08997 * 109.47768 * 59.99930 * 7 6 4 9 9 O 1.42903 * 109.46745 * 299.99514 * 7 6 4 10 10 C 1.53002 * 109.47054 * 180.02562 * 7 6 4 11 11 N 1.46897 * 109.47403 * 184.99808 * 10 7 6 12 12 C 1.46897 * 111.00549 * 179.97438 * 11 10 7 13 13 C 1.50695 * 109.47356 * 179.97438 * 12 11 10 14 14 C 1.38304 * 119.93060 * 269.72609 * 13 12 11 15 15 C 1.38098 * 120.06917 * 179.72264 * 14 13 12 16 16 C 1.38882 * 119.93003 * 0.57426 * 15 14 13 17 17 O 1.35744 * 120.07089 * 179.67728 * 16 15 14 18 18 C 1.34835 * 117.00155 * 173.94009 * 17 16 15 19 19 H 1.07994 * 119.99855 * 2.97522 * 18 17 16 20 20 C 1.38654 * 120.00346 * 182.97685 * 18 17 16 21 21 N 1.31563 * 119.99561 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00089 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47259 * 59.99985 * 22 20 18 24 24 H 1.48503 * 109.46863 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46938 * 299.99512 * 22 20 18 26 26 C 1.38878 * 119.86068 * 359.70433 * 16 15 14 27 27 C 1.38105 * 119.93079 * 359.97438 * 26 16 15 28 28 H 1.08995 * 109.47082 * 95.40238 * 1 2 3 29 29 H 1.09005 * 109.46649 * 215.39887 * 1 2 3 30 30 H 1.08999 * 109.46945 * 335.39721 * 1 2 3 31 31 H 1.09007 * 109.47152 * 84.78463 * 5 4 2 32 32 H 1.09003 * 109.47594 * 204.78450 * 5 4 2 33 33 H 1.09001 * 109.47154 * 324.78755 * 5 4 2 34 34 H 1.09007 * 109.46906 * 209.99623 * 6 4 2 35 35 H 1.09000 * 109.47568 * 330.00118 * 6 4 2 36 36 H 0.96696 * 114.00078 * 300.00214 * 9 7 6 37 37 H 1.08999 * 109.46798 * 304.99564 * 10 7 6 38 38 H 1.09002 * 109.47465 * 64.99304 * 10 7 6 39 39 H 1.00903 * 110.99764 * 303.95299 * 11 10 7 40 40 H 1.08998 * 109.47066 * 300.00125 * 12 11 10 41 41 H 1.09000 * 109.46687 * 59.99757 * 12 11 10 42 42 H 1.07999 * 119.96330 * 359.97438 * 14 13 12 43 43 H 1.07994 * 120.03788 * 180.26941 * 15 14 13 44 44 H 0.97001 * 119.99860 * 180.02562 * 21 20 18 45 45 H 1.08005 * 120.03517 * 179.97438 * 26 16 15 46 46 H 1.08003 * 119.96268 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0055 5 6 1.4534 -2.4336 -0.1080 6 6 3.6410 -1.1694 0.1252 7 6 4.0315 -1.2315 1.6033 8 1 3.6291 -2.1419 2.0476 9 8 3.4994 -0.0936 2.2846 10 6 5.5564 -1.2332 1.7284 11 7 5.9320 -1.4131 3.1370 12 6 7.3924 -1.4204 3.2958 13 6 7.7387 -1.6059 4.7506 14 6 7.8920 -0.5021 5.5697 15 6 8.2037 -0.6690 6.9046 16 6 8.3749 -1.9466 7.4217 17 8 8.6878 -2.1137 8.7320 18 6 8.7163 -3.3786 9.1981 19 1 8.5431 -4.2058 8.5257 20 6 8.9678 -3.6174 10.5406 21 7 9.1792 -2.6096 11.3595 22 14 9.0079 -5.3698 11.1860 23 1 10.0689 -6.1328 10.4811 24 1 9.2938 -5.3541 12.6432 25 1 7.6921 -6.0154 10.9473 26 6 8.2259 -3.0527 6.5953 27 6 7.9076 -2.8794 5.2627 28 1 -0.3633 -0.0967 -1.0231 29 1 -0.3633 -0.8378 0.5953 30 1 -0.3633 0.9344 0.4278 31 1 1.2757 -2.6576 -1.1600 32 1 2.0439 -3.2334 0.3390 33 1 0.4990 -2.3523 0.4123 34 1 4.0468 -2.0375 -0.3945 35 1 4.0434 -0.2590 -0.3190 36 1 3.8152 0.7535 1.9414 37 1 5.9686 -2.0495 1.1353 38 1 5.9518 -0.2846 1.3651 39 1 5.5085 -0.7047 3.7175 40 1 7.8170 -2.2382 2.7136 41 1 7.8008 -0.4733 2.9433 42 1 7.7638 0.4913 5.1657 43 1 8.3190 0.1931 7.5447 44 1 9.3555 -2.7766 12.2986 45 1 8.3589 -4.0475 6.9944 46 1 7.7913 -3.7393 4.6197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486255229.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:39 Heat of formation + Delta-G solvation = -111.631546 kcal Electronic energy + Delta-G solvation = -26124.481637 eV Core-core repulsion = 22206.839247 eV Total energy + Delta-G solvation = -3917.642390 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.93806 -40.77579 -39.03435 -38.32959 -36.39330 -35.83855 -34.27796 -32.37127 -31.79093 -31.23939 -29.64609 -27.90203 -27.41051 -26.12718 -24.35025 -23.61564 -22.62563 -21.93318 -20.28457 -19.83583 -18.82992 -18.18342 -17.70021 -17.27197 -16.90299 -16.56650 -16.36193 -16.23552 -15.90055 -15.73119 -15.51328 -15.27355 -14.82510 -14.77772 -14.40441 -14.21144 -14.10924 -13.89326 -13.57613 -13.53385 -13.39884 -13.12439 -12.95716 -12.87562 -12.75441 -12.48339 -12.39839 -12.31946 -12.15180 -12.06879 -11.99765 -11.24017 -11.17825 -10.80370 -10.77045 -9.77479 -9.55207 -9.35218 -8.89881 -8.46713 -6.14898 0.60477 0.67867 1.34873 1.45995 1.51539 1.67259 2.11328 2.18367 2.78296 3.09742 3.36370 3.51786 3.55422 3.77872 3.96515 4.03998 4.09821 4.14581 4.17681 4.21960 4.31069 4.39867 4.49061 4.54878 4.57086 4.60573 4.65513 4.71306 4.75000 4.82489 4.84147 4.91553 5.09468 5.13297 5.15787 5.16305 5.30771 5.51836 5.56722 5.72087 5.81777 6.02990 6.09566 6.25141 6.42376 6.43755 6.74262 6.97663 7.22613 7.78652 8.76394 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.021823 B = 0.001922 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.716412 B =14565.373438 C =14900.011853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.505 3.495 3 O -0.594 6.594 4 N -0.613 5.613 5 C 0.069 3.931 6 C 0.084 3.916 7 C 0.099 3.901 8 H 0.099 0.901 9 O -0.572 6.572 10 C 0.034 3.966 11 N -0.691 5.691 12 C 0.123 3.877 13 C -0.159 4.159 14 C -0.062 4.062 15 C -0.207 4.207 16 C 0.113 3.887 17 O -0.234 6.234 18 C -0.414 4.414 19 H 0.102 0.898 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.256 1.256 24 H -0.272 1.272 25 H -0.258 1.258 26 C -0.244 4.244 27 C -0.049 4.049 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.073 0.927 36 H 0.377 0.623 37 H 0.097 0.903 38 H 0.038 0.962 39 H 0.342 0.658 40 H 0.087 0.913 41 H 0.044 0.956 42 H 0.143 0.857 43 H 0.111 0.889 44 H 0.272 0.728 45 H 0.118 0.882 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.133 -1.764 -28.093 31.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.296 3.704 3 O -0.476 6.476 4 N -0.345 5.345 5 C -0.073 4.073 6 C -0.040 4.040 7 C 0.038 3.962 8 H 0.117 0.883 9 O -0.378 6.378 10 C -0.096 4.096 11 N -0.323 5.323 12 C -0.006 4.006 13 C -0.160 4.160 14 C -0.080 4.080 15 C -0.226 4.226 16 C 0.063 3.937 17 O -0.140 6.140 18 C -0.490 4.490 19 H 0.119 0.881 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.180 1.180 24 H -0.196 1.196 25 H -0.182 1.182 26 C -0.264 4.264 27 C -0.068 4.068 28 H 0.129 0.871 29 H 0.121 0.879 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.131 0.869 35 H 0.092 0.908 36 H 0.225 0.775 37 H 0.115 0.885 38 H 0.056 0.944 39 H 0.160 0.840 40 H 0.106 0.894 41 H 0.062 0.938 42 H 0.160 0.840 43 H 0.129 0.871 44 H 0.081 0.919 45 H 0.136 0.864 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.085 -2.190 -27.418 31.370 hybrid contribution 0.808 0.850 0.558 1.299 sum -14.277 -1.339 -26.860 30.448 Atomic orbital electron populations 1.21966 0.89406 1.05585 1.05886 1.21403 0.92028 0.82826 0.74183 1.90643 1.71873 1.32854 1.52211 1.47869 1.07043 1.07387 1.72202 1.22117 0.98035 0.84025 1.03095 1.22161 0.80867 1.04587 0.96350 1.22380 0.92138 0.89632 0.92032 0.88304 1.86570 1.72738 1.16817 1.61644 1.22601 0.95539 1.01489 0.89965 1.60457 1.08693 1.55354 1.07761 1.20626 0.87851 1.01115 0.90960 1.19639 1.07194 0.92426 0.96729 1.20883 0.96595 0.99371 0.91178 1.20430 1.10919 0.94071 0.97176 1.19940 0.93657 0.95333 0.84788 1.83935 1.78145 1.30905 1.21047 1.21790 1.51010 0.81784 0.94415 0.88113 1.26626 0.95860 1.05008 0.94744 1.70188 1.46922 1.33696 1.05173 0.84631 0.79866 0.74118 0.77491 1.18037 1.19620 1.18198 1.21277 1.11239 0.98225 0.95609 1.20923 0.95027 0.97704 0.93098 0.87125 0.87859 0.89826 0.90717 0.89848 0.89619 0.86878 0.90811 0.77516 0.88460 0.94432 0.83990 0.89430 0.93820 0.83965 0.87120 0.91858 0.86377 0.84329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 9.55 71.24 0.68 -0.91 16 2 C 0.50 8.76 7.20 87.66 0.63 9.39 16 3 O -0.59 -15.47 15.81 -1.39 -0.02 -15.49 16 4 N -0.61 -7.67 2.83 -846.73 -2.39 -10.07 16 5 C 0.07 0.34 10.24 127.77 1.31 1.65 16 6 C 0.08 1.03 5.15 86.38 0.44 1.48 16 7 C 0.10 1.55 3.48 30.60 0.11 1.65 16 8 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 9 O -0.57 -12.38 11.78 -147.35 -1.74 -14.11 16 10 C 0.03 0.51 5.36 86.30 0.46 0.98 16 11 N -0.69 -14.94 6.49 -517.95 -3.36 -18.31 16 12 C 0.12 2.75 5.81 85.56 0.50 3.25 16 13 C -0.16 -4.97 5.40 -19.84 -0.11 -5.08 16 14 C -0.06 -2.12 9.69 22.25 0.22 -1.90 16 15 C -0.21 -9.09 9.99 22.39 0.22 -8.86 16 16 C 0.11 5.80 6.65 22.58 0.15 5.95 16 17 O -0.23 -14.43 9.76 -22.72 -0.22 -14.65 16 18 C -0.41 -24.59 9.49 67.92 0.64 -23.95 16 19 H 0.10 5.48 5.21 -2.91 -0.02 5.47 16 20 C -0.03 -1.45 5.49 84.83 0.47 -0.99 16 21 N -0.92 -57.52 13.67 21.61 0.30 -57.22 16 22 Si 1.02 43.43 29.55 68.60 2.03 45.46 16 23 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 25 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 26 C -0.24 -10.90 9.16 22.39 0.21 -10.69 16 27 C -0.05 -1.72 9.69 22.25 0.22 -1.51 16 28 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.10 0.54 6.25 -2.38 -0.01 0.52 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.15 8.14 -2.38 -0.02 0.13 16 32 H 0.08 0.31 8.03 -2.39 -0.02 0.29 16 33 H 0.09 0.25 6.02 -2.39 -0.01 0.23 16 34 H 0.11 0.76 8.07 -2.38 -0.02 0.74 16 35 H 0.07 1.14 7.36 -2.39 -0.02 1.12 16 36 H 0.38 7.56 8.62 -74.06 -0.64 6.92 16 37 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.34 8.38 8.28 -89.69 -0.74 7.64 16 40 H 0.09 1.73 8.08 -2.39 -0.02 1.71 16 41 H 0.04 0.88 8.08 -2.39 -0.02 0.86 16 42 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 43 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 44 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 45 H 0.12 5.34 5.66 -2.91 -0.02 5.33 16 46 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -80.53 384.55 0.36 -80.18 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: -0.37 Total: 33.76 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 6.14 Total: -29.54 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -5.46 Total: -85.60 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -1.98 Total: -44.26 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -80.53 0.36 -80.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486255229.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.456 kcal (2) G-P(sol) polarization free energy of solvation -80.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds