Wall clock time and date at job start Fri Apr 10 2020 14:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46799 * 2 1 4 4 C 1.53237 * 109.47204 * 119.99586 * 2 1 3 5 5 S 1.81739 * 108.79697 * 62.34893 * 4 2 1 6 6 O 1.42105 * 109.47087 * 170.58302 * 5 4 2 7 7 C 1.81730 * 102.30968 * 54.54195 * 5 4 2 8 8 C 1.53238 * 108.79883 * 305.46007 * 7 5 4 9 9 N 1.46375 * 109.48534 * 57.65380 * 8 7 5 10 10 S 1.65597 * 119.64229 * 114.93746 * 9 8 7 11 11 O 1.42096 * 104.28113 * 12.14518 * 10 9 8 12 12 O 1.42104 * 104.27543 * 140.00584 * 10 9 8 13 13 C 1.81396 * 104.45023 * 256.07243 * 10 9 8 14 14 C 1.52997 * 109.47692 * 180.02562 * 13 10 9 15 15 C 1.52994 * 109.47708 * 180.02562 * 14 13 10 16 16 C 1.50707 * 109.47337 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99473 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99887 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99737 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 120.00136 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46829 * 89.99918 * 20 18 16 22 22 H 1.48496 * 109.46909 * 209.99918 * 20 18 16 23 23 H 1.48499 * 109.47105 * 329.99983 * 20 18 16 24 24 H 1.08999 * 109.47100 * 59.99710 * 1 2 3 25 25 H 1.08996 * 109.46840 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46583 * 299.99787 * 1 2 3 27 27 H 1.09002 * 109.46852 * 70.07437 * 3 2 1 28 28 H 1.09001 * 109.47155 * 190.06982 * 3 2 1 29 29 H 1.08998 * 109.47459 * 310.06987 * 3 2 1 30 30 H 1.08995 * 109.58829 * 182.14383 * 4 2 1 31 31 H 1.08998 * 109.58083 * 302.55428 * 4 2 1 32 32 H 1.09005 * 109.58323 * 65.24981 * 7 5 4 33 33 H 1.09000 * 109.59051 * 185.52922 * 7 5 4 34 34 H 1.09005 * 109.47083 * 177.65641 * 8 7 5 35 35 H 1.09002 * 109.46832 * 297.64830 * 8 7 5 36 36 H 1.09001 * 109.47250 * 300.00392 * 13 10 9 37 37 H 1.09001 * 109.47363 * 59.99871 * 13 10 9 38 38 H 1.09001 * 109.47029 * 300.00449 * 14 13 10 39 39 H 1.09001 * 109.46664 * 60.00006 * 14 13 10 40 40 H 1.09001 * 109.47119 * 300.00243 * 15 14 13 41 41 H 1.09001 * 109.47178 * 60.00168 * 15 14 13 42 42 H 0.96998 * 119.99358 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0408 -0.7223 1.2512 5 16 1.4833 -2.4512 1.1980 6 8 2.1244 -3.1877 2.2304 7 6 2.1019 -3.0083 -0.4174 8 6 1.5850 -2.0546 -1.4998 9 7 2.0179 -0.6899 -1.1953 10 16 3.0703 0.0821 -2.2145 11 8 3.0983 -0.7368 -3.3754 12 8 2.5873 1.4173 -2.2712 13 6 4.6648 0.0182 -1.3519 14 6 5.7330 0.7083 -2.2025 15 6 7.0779 0.6538 -1.4753 16 6 8.1302 1.3330 -2.3136 17 1 7.8659 1.7611 -3.2692 18 6 9.4302 1.4078 -1.8604 19 7 10.3483 2.0010 -2.5917 20 14 9.8871 0.6680 -0.2070 21 1 10.2962 -0.7472 -0.3942 22 1 11.0129 1.4348 0.3842 23 1 8.7152 0.7282 0.7031 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8308 1.9018 0.9662 28 1 3.1150 1.4479 -0.1797 29 1 1.5374 2.0056 -0.7864 30 1 3.1301 -0.6902 1.2725 31 1 1.6416 -0.2369 2.1418 32 1 3.1919 -3.0002 -0.4138 33 1 1.7447 -4.0185 -0.6170 34 1 1.9838 -2.3545 -2.4689 35 1 0.4960 -2.0927 -1.5275 36 1 4.5795 0.5282 -0.3924 37 1 4.9471 -1.0216 -1.1868 38 1 5.8183 0.1986 -3.1623 39 1 5.4504 1.7481 -2.3672 40 1 6.9928 1.1632 -0.5154 41 1 7.3603 -0.3861 -1.3110 42 1 11.2628 2.0540 -2.2726 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189187543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:06 Heat of formation + Delta-G solvation = -99.408098 kcal Electronic energy + Delta-G solvation = -24874.747174 eV Core-core repulsion = 21302.279899 eV Total energy + Delta-G solvation = -3572.467276 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.15464 -37.32250 -35.98029 -35.88972 -34.92505 -33.69671 -32.27739 -29.93702 -28.63979 -27.86731 -27.57133 -23.81394 -23.45699 -21.18865 -20.31254 -18.94258 -17.91395 -17.22126 -17.03595 -16.78502 -16.06631 -15.67231 -15.39042 -15.20508 -15.10323 -14.61348 -14.45043 -14.21922 -13.73198 -13.45054 -13.00906 -12.77085 -12.58784 -12.57203 -12.46010 -12.34058 -12.21375 -12.05237 -11.98876 -11.90323 -11.73531 -11.61830 -11.36588 -11.02617 -10.92206 -10.60840 -10.20008 -10.15677 -9.93617 -9.84633 -9.37678 -9.26615 -8.62831 -8.59200 -6.12680 -4.12164 0.23552 1.21354 2.15984 2.46466 3.23347 3.31318 3.33055 3.40017 3.77715 4.06408 4.11861 4.28155 4.36506 4.55013 4.61719 4.64904 4.82213 4.86596 4.91881 5.03206 5.13618 5.20940 5.30218 5.39259 5.43958 5.48197 5.49150 5.55911 5.71396 5.72560 5.91973 6.04664 6.16558 6.28253 6.34702 6.59515 7.06309 7.20008 7.66199 8.42931 8.91329 9.48549 11.00554 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.004090 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.805563 B = 6844.651906 C = 7649.177738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.202 3.798 3 C -0.184 4.184 4 C -0.454 4.454 5 S 1.239 4.761 6 O -0.856 6.856 7 C -0.463 4.463 8 C 0.134 3.866 9 N -1.002 6.002 10 S 2.598 3.402 11 O -0.958 6.958 12 O -0.948 6.948 13 C -0.624 4.624 14 C -0.095 4.095 15 C -0.004 4.004 16 C -0.527 4.527 17 H 0.075 0.925 18 C 0.069 3.931 19 N -0.899 5.899 20 Si 0.878 3.122 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.267 1.267 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.126 0.874 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.019 0.981 41 H 0.014 0.986 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.585 -7.283 6.875 28.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.114 3.886 3 C -0.243 4.243 4 C -0.593 4.593 5 S 1.438 4.562 6 O -0.851 6.851 7 C -0.602 4.602 8 C 0.008 3.992 9 N -0.839 5.839 10 S 2.696 3.304 11 O -0.948 6.948 12 O -0.938 6.938 13 C -0.755 4.755 14 C -0.135 4.135 15 C -0.043 4.043 16 C -0.565 4.565 17 H 0.093 0.907 18 C -0.132 4.132 19 N -0.537 5.537 20 Si 0.706 3.294 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.192 1.192 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.132 0.868 30 H 0.114 0.886 31 H 0.145 0.855 32 H 0.111 0.889 33 H 0.145 0.855 34 H 0.131 0.869 35 H 0.112 0.888 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.038 0.962 41 H 0.033 0.967 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -27.144 -7.422 6.726 28.933 hybrid contribution 3.355 -0.536 1.453 3.695 sum -23.788 -7.958 8.179 26.384 Atomic orbital electron populations 1.22241 0.92652 1.03011 1.04026 1.19823 0.95514 0.91775 0.81474 1.22915 1.02268 0.93898 1.05218 1.28135 1.08844 1.18536 1.03758 1.70461 1.17050 0.84974 0.83751 1.93127 1.78136 1.65364 1.48471 1.28046 1.09174 1.07184 1.15801 1.21029 1.01246 0.78528 0.98391 1.57975 1.61635 1.25009 1.39243 1.05490 0.76242 0.74319 0.74364 1.93539 1.86802 1.69186 1.45285 1.93629 1.77627 1.36379 1.86165 1.30824 1.20331 1.10497 1.13849 1.21302 0.94864 0.99481 0.97821 1.19531 0.91575 0.96928 0.96278 1.21109 0.92358 1.37048 1.06031 0.90660 1.25005 0.96395 0.94742 0.97097 1.69907 1.02425 1.43526 1.37875 0.86807 0.78337 0.79526 0.84769 1.20203 1.21119 1.19194 0.90571 0.91332 0.90456 0.90551 0.92430 0.86840 0.88624 0.85486 0.88899 0.85537 0.86886 0.88788 0.85343 0.85736 0.90999 0.90846 0.96246 0.96742 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.70 8.04 37.16 0.30 -0.40 16 2 C 0.20 1.55 1.02 -131.76 -0.13 1.42 16 3 C -0.18 -1.72 6.90 37.16 0.26 -1.47 16 4 C -0.45 -3.45 5.39 37.28 0.20 -3.25 16 5 S 1.24 9.09 12.33 -107.50 -1.33 7.77 16 6 O -0.86 -12.36 18.14 -35.23 -0.64 -13.00 16 7 C -0.46 -3.38 6.65 37.28 0.25 -3.13 16 8 C 0.13 0.96 5.84 -3.99 -0.02 0.94 16 9 N -1.00 -9.37 2.79 -100.42 -0.28 -9.65 16 10 S 2.60 35.07 4.80 -107.50 -0.52 34.56 16 11 O -0.96 -15.37 16.17 -57.54 -0.93 -16.30 16 12 O -0.95 -14.26 13.65 -57.54 -0.79 -15.05 16 13 C -0.62 -9.23 5.83 37.16 0.22 -9.01 16 14 C -0.10 -1.86 5.16 -26.74 -0.14 -2.00 16 15 C 0.00 -0.11 4.04 -27.88 -0.11 -0.22 16 16 C -0.53 -15.11 9.66 -34.44 -0.33 -15.44 16 17 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 18 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 19 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 20 Si 0.88 21.82 27.47 -169.99 -4.67 17.16 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 24 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.12 5.84 -51.93 -0.30 -0.18 16 26 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.08 0.55 8.11 -51.93 -0.42 0.13 16 28 H 0.06 0.62 4.32 -51.93 -0.22 0.40 16 29 H 0.11 1.19 6.26 -51.93 -0.32 0.86 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 33 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.11 0.95 6.45 -51.93 -0.33 0.61 16 35 H 0.09 0.32 6.92 -51.93 -0.36 -0.04 16 36 H 0.13 1.68 6.27 -51.92 -0.33 1.36 16 37 H 0.12 1.67 8.14 -51.92 -0.42 1.25 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 41 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 342.60 15.07 5.16 5.16 Total: -1.00 -39.95 342.60 -9.28 -49.23 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -6.45 Total: -2.25 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 0.38 Total: -30.63 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.49 Total: -36.65 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -2.35 Total: -44.34 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.16 kcal Atomic # 16 Polarization: 44.17 SS G_CDS: -1.84 Total: 42.32 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -39.95 -9.28 -49.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189187543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.175 kcal (2) G-P(sol) polarization free energy of solvation -39.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds