Wall clock time and date at job start Fri Apr 10 2020 14:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46799 * 2 1 4 4 C 1.53237 * 109.47204 * 119.99586 * 2 1 3 5 5 S 1.81739 * 108.79697 * 62.34893 * 4 2 1 6 6 O 1.42105 * 109.47087 * 170.58302 * 5 4 2 7 7 C 1.81730 * 102.30968 * 54.54195 * 5 4 2 8 8 C 1.53238 * 108.79883 * 305.46007 * 7 5 4 9 9 N 1.46375 * 109.48534 * 57.65380 * 8 7 5 10 10 S 1.65597 * 119.64229 * 114.93746 * 9 8 7 11 11 O 1.42096 * 104.28113 * 12.14518 * 10 9 8 12 12 O 1.42104 * 104.27543 * 140.00584 * 10 9 8 13 13 C 1.81396 * 104.45023 * 256.07243 * 10 9 8 14 14 C 1.52997 * 109.47692 * 180.02562 * 13 10 9 15 15 C 1.52994 * 109.47708 * 180.02562 * 14 13 10 16 16 C 1.50707 * 109.47337 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99473 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99887 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99737 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 120.00136 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46829 * 89.99918 * 20 18 16 22 22 H 1.48496 * 109.46909 * 209.99918 * 20 18 16 23 23 H 1.48499 * 109.47105 * 329.99983 * 20 18 16 24 24 H 1.08999 * 109.47100 * 59.99710 * 1 2 3 25 25 H 1.08996 * 109.46840 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46583 * 299.99787 * 1 2 3 27 27 H 1.09002 * 109.46852 * 70.07437 * 3 2 1 28 28 H 1.09001 * 109.47155 * 190.06982 * 3 2 1 29 29 H 1.08998 * 109.47459 * 310.06987 * 3 2 1 30 30 H 1.08995 * 109.58829 * 182.14383 * 4 2 1 31 31 H 1.08998 * 109.58083 * 302.55428 * 4 2 1 32 32 H 1.09005 * 109.58323 * 65.24981 * 7 5 4 33 33 H 1.09000 * 109.59051 * 185.52922 * 7 5 4 34 34 H 1.09005 * 109.47083 * 177.65641 * 8 7 5 35 35 H 1.09002 * 109.46832 * 297.64830 * 8 7 5 36 36 H 1.09001 * 109.47250 * 300.00392 * 13 10 9 37 37 H 1.09001 * 109.47363 * 59.99871 * 13 10 9 38 38 H 1.09001 * 109.47029 * 300.00449 * 14 13 10 39 39 H 1.09001 * 109.46664 * 60.00006 * 14 13 10 40 40 H 1.09001 * 109.47119 * 300.00243 * 15 14 13 41 41 H 1.09001 * 109.47178 * 60.00168 * 15 14 13 42 42 H 0.96998 * 119.99358 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0408 -0.7223 1.2512 5 16 1.4833 -2.4512 1.1980 6 8 2.1244 -3.1877 2.2304 7 6 2.1019 -3.0083 -0.4174 8 6 1.5850 -2.0546 -1.4998 9 7 2.0179 -0.6899 -1.1953 10 16 3.0703 0.0821 -2.2145 11 8 3.0983 -0.7368 -3.3754 12 8 2.5873 1.4173 -2.2712 13 6 4.6648 0.0182 -1.3519 14 6 5.7330 0.7083 -2.2025 15 6 7.0779 0.6538 -1.4753 16 6 8.1302 1.3330 -2.3136 17 1 7.8659 1.7611 -3.2692 18 6 9.4302 1.4078 -1.8604 19 7 10.3483 2.0010 -2.5917 20 14 9.8871 0.6680 -0.2070 21 1 10.2962 -0.7472 -0.3942 22 1 11.0129 1.4348 0.3842 23 1 8.7152 0.7282 0.7031 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8308 1.9018 0.9662 28 1 3.1150 1.4479 -0.1797 29 1 1.5374 2.0056 -0.7864 30 1 3.1301 -0.6902 1.2725 31 1 1.6416 -0.2369 2.1418 32 1 3.1919 -3.0002 -0.4138 33 1 1.7447 -4.0185 -0.6170 34 1 1.9838 -2.3545 -2.4689 35 1 0.4960 -2.0927 -1.5275 36 1 4.5795 0.5282 -0.3924 37 1 4.9471 -1.0216 -1.1868 38 1 5.8183 0.1986 -3.1623 39 1 5.4504 1.7481 -2.3672 40 1 6.9928 1.1632 -0.5154 41 1 7.3603 -0.3861 -1.3110 42 1 11.2628 2.0540 -2.2726 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189187543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:06 Heat of formation + Delta-G solvation = -131.595840 kcal Electronic energy + Delta-G solvation = -24876.142939 eV Core-core repulsion = 21302.279899 eV Total energy + Delta-G solvation = -3573.863041 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.82928 -38.42414 -37.09171 -36.83155 -36.63758 -34.44788 -34.24415 -30.62529 -30.34068 -28.41495 -28.23481 -25.47458 -24.19258 -22.49761 -21.56439 -19.85090 -19.08858 -18.72745 -17.98118 -17.75635 -17.25694 -16.56248 -16.33080 -16.15874 -15.96081 -15.73816 -15.72321 -15.31046 -14.93119 -14.37799 -14.26805 -14.19098 -13.83911 -13.49684 -13.33838 -13.26288 -13.23218 -13.17962 -13.02379 -12.84091 -12.72102 -12.59915 -12.51077 -12.23690 -11.99000 -11.93421 -11.74919 -11.51158 -11.45800 -11.30019 -10.93773 -10.86556 -10.15908 -9.27872 -8.38542 -6.44185 -0.83766 0.61941 1.27226 1.28647 1.39989 1.55611 1.58025 2.26440 2.65698 2.77867 2.96043 3.09988 3.34525 3.61065 3.63628 3.76869 4.01468 4.04327 4.06382 4.19328 4.30342 4.34056 4.45634 4.59740 4.64462 4.81238 4.83417 4.84876 4.94817 4.96590 5.03204 5.15636 5.20378 5.21522 5.31892 5.52481 5.54699 5.61215 5.70469 6.16364 6.63258 7.20476 8.78346 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.004090 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.805563 B = 6844.651906 C = 7649.177738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.200 3.800 3 C -0.193 4.193 4 C -0.458 4.458 5 S 1.302 4.698 6 O -0.927 6.927 7 C -0.466 4.466 8 C 0.125 3.875 9 N -0.993 5.993 10 S 2.617 3.383 11 O -0.985 6.985 12 O -0.965 6.965 13 C -0.632 4.632 14 C -0.098 4.098 15 C -0.005 4.005 16 C -0.544 4.544 17 H 0.035 0.965 18 C 0.008 3.992 19 N -0.947 5.947 20 Si 0.949 3.051 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.248 1.248 24 H 0.072 0.928 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.037 0.963 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.153 0.847 32 H 0.070 0.930 33 H 0.152 0.848 34 H 0.102 0.898 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.027 0.973 41 H 0.022 0.978 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.415 -8.609 9.084 31.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.113 3.887 3 C -0.252 4.252 4 C -0.597 4.597 5 S 1.503 4.497 6 O -0.923 6.923 7 C -0.605 4.605 8 C 0.000 4.000 9 N -0.832 5.832 10 S 2.713 3.287 11 O -0.976 6.976 12 O -0.955 6.955 13 C -0.761 4.761 14 C -0.138 4.138 15 C -0.044 4.044 16 C -0.582 4.582 17 H 0.053 0.947 18 C -0.190 4.190 19 N -0.587 5.587 20 Si 0.771 3.229 21 H -0.192 1.192 22 H -0.204 1.204 23 H -0.171 1.171 24 H 0.091 0.909 25 H 0.117 0.883 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.056 0.944 29 H 0.119 0.881 30 H 0.095 0.905 31 H 0.171 0.829 32 H 0.089 0.911 33 H 0.170 0.830 34 H 0.121 0.879 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.155 0.845 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.046 0.954 41 H 0.041 0.959 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -29.970 -8.751 8.936 32.475 hybrid contribution 4.185 -0.052 0.656 4.237 sum -25.784 -8.802 9.592 28.885 Atomic orbital electron populations 1.22378 0.89360 1.05474 1.05203 1.20066 0.97879 0.90440 0.80339 1.22979 1.00891 0.95265 1.06112 1.28196 1.07851 1.18725 1.04935 1.69580 1.15107 0.83314 0.81710 1.93004 1.79653 1.67718 1.51895 1.28105 1.07945 1.08912 1.15577 1.21403 1.04125 0.76820 0.97674 1.57764 1.59942 1.26032 1.39466 1.04713 0.75836 0.73909 0.74194 1.93501 1.87114 1.69804 1.47143 1.93621 1.77563 1.37694 1.86623 1.30873 1.20336 1.10813 1.14045 1.21130 0.94651 0.99959 0.98014 1.19495 0.92277 0.96560 0.96053 1.21498 0.94156 1.37144 1.05357 0.94682 1.26001 0.96227 0.95188 1.01558 1.70060 1.03065 1.45290 1.40279 0.85689 0.78714 0.78846 0.79601 1.19154 1.20444 1.17115 0.90863 0.88262 0.88012 0.88228 0.94418 0.88076 0.90523 0.82946 0.91067 0.82989 0.87943 0.83817 0.83674 0.84481 0.91880 0.91357 0.95439 0.95945 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.69 8.04 71.98 0.58 -0.12 16 2 C 0.20 2.45 1.02 3.71 0.00 2.45 16 3 C -0.19 -3.23 6.90 71.98 0.50 -2.74 16 4 C -0.46 -5.56 5.39 72.06 0.39 -5.17 16 5 S 1.30 15.24 12.33 -56.49 -0.70 14.55 16 6 O -0.93 -25.34 18.14 -148.98 -2.70 -28.04 16 7 C -0.47 -5.49 6.65 72.06 0.48 -5.01 16 8 C 0.12 1.38 5.84 86.48 0.51 1.89 16 9 N -0.99 -16.20 2.79 -471.63 -1.32 -17.52 16 10 S 2.62 68.94 4.80 -56.49 -0.27 68.67 16 11 O -0.99 -31.33 16.17 -127.65 -2.06 -33.39 16 12 O -0.96 -28.72 13.65 -127.65 -1.74 -30.46 16 13 C -0.63 -18.41 5.83 71.98 0.42 -17.99 16 14 C -0.10 -3.94 5.16 30.59 0.16 -3.78 16 15 C -0.01 -0.26 4.04 29.85 0.12 -0.14 16 16 C -0.54 -32.21 9.66 25.60 0.25 -31.96 16 17 H 0.03 2.27 7.99 -2.91 -0.02 2.25 16 18 C 0.01 0.46 5.47 84.65 0.46 0.92 16 19 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 20 Si 0.95 44.88 27.47 68.60 1.88 46.76 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 23 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 24 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.10 -0.22 5.84 -2.39 -0.01 -0.24 16 26 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 27 H 0.10 1.15 8.11 -2.39 -0.02 1.13 16 28 H 0.04 0.77 4.32 -2.39 -0.01 0.76 16 29 H 0.10 1.98 6.26 -2.39 -0.01 1.96 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.15 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.10 1.48 6.45 -2.38 -0.02 1.46 16 35 H 0.14 0.23 6.92 -2.39 -0.02 0.21 16 36 H 0.15 3.68 6.27 -2.39 -0.01 3.66 16 37 H 0.14 3.57 8.14 -2.39 -0.02 3.55 16 38 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.07 2.72 8.14 -2.39 -0.02 2.71 16 40 H 0.03 1.26 7.20 -2.39 -0.02 1.24 16 41 H 0.02 1.02 7.57 -2.39 -0.02 1.01 16 42 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -90.71 342.60 -1.79 -92.50 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 0.96 Total: 8.55 kcal Atomic # 6 Polarization: -65.50 SS G_CDS: 3.86 Total: -61.64 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -1.02 Total: -77.50 kcal Atomic # 8 Polarization: -85.39 SS G_CDS: -6.51 Total: -91.89 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.76 kcal Atomic # 16 Polarization: 84.19 SS G_CDS: -0.97 Total: 83.22 kcal Total: -90.71 -1.79 -92.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189187543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.093 kcal (2) G-P(sol) polarization free energy of solvation -90.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds