Wall clock time and date at job start Fri Apr 10 2020 14:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99670 * 2 1 4 4 H 1.48504 * 109.46803 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47242 * 300.00020 * 3 2 1 6 6 H 1.48497 * 109.46958 * 60.00128 * 3 2 1 7 7 C 1.37873 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00175 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47024 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46948 * 180.02562 * 10 9 7 12 12 S 1.81398 * 109.47121 * 179.97438 * 11 10 9 13 13 O 1.42102 * 110.53922 * 61.98546 * 12 11 10 14 14 O 1.42094 * 110.54419 * 285.23378 * 12 11 10 15 15 N 1.65602 * 104.45038 * 173.60672 * 12 11 10 16 16 C 1.46377 * 119.64963 * 258.81591 * 15 12 11 17 17 C 1.53239 * 109.48638 * 245.11068 * 16 15 12 18 18 S 1.81745 * 108.79564 * 302.34201 * 17 16 15 19 19 C 1.81743 * 102.30507 * 54.54289 * 18 17 16 20 20 C 1.46381 * 119.64241 * 78.83452 * 15 12 11 21 21 H 1.09004 * 109.46555 * 234.89254 * 20 15 12 22 22 C 1.52997 * 109.47219 * 354.88593 * 20 15 12 23 23 C 1.53000 * 109.47168 * 188.43928 * 22 20 15 24 24 O 1.42902 * 109.46937 * 174.42220 * 23 22 20 25 25 H 0.96999 * 120.00515 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46829 * 60.00506 * 9 7 2 27 27 H 1.08998 * 109.47108 * 300.00325 * 9 7 2 28 28 H 1.08999 * 109.47368 * 60.00268 * 10 9 7 29 29 H 1.08998 * 109.46980 * 299.99836 * 10 9 7 30 30 H 1.09007 * 109.47207 * 59.99808 * 11 10 9 31 31 H 1.08999 * 109.47442 * 300.00043 * 11 10 9 32 32 H 1.09000 * 109.46607 * 5.11276 * 16 15 12 33 33 H 1.08995 * 109.46741 * 125.10493 * 16 15 12 34 34 H 1.08999 * 109.58491 * 62.13626 * 17 16 15 35 35 H 1.08996 * 109.57988 * 182.55014 * 17 16 15 36 36 H 1.09001 * 109.57400 * 185.66296 * 19 18 17 37 37 H 1.09000 * 109.58244 * 65.25046 * 19 18 17 38 38 H 1.09000 * 109.46730 * 68.43672 * 22 20 15 39 39 H 1.08998 * 109.46867 * 308.44062 * 22 20 15 40 40 H 1.08994 * 109.47306 * 54.41657 * 23 22 20 41 41 H 1.09003 * 109.47068 * 294.41395 * 23 22 20 42 42 H 0.96702 * 113.99537 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 16 2.6593 -6.3658 -0.0019 13 8 3.4584 -6.3392 1.1728 14 8 3.2490 -6.5170 -1.2859 15 7 1.7165 -7.7156 0.1760 16 6 1.6118 -8.3580 1.4871 17 6 2.2315 -9.7580 1.4214 18 16 1.3791 -10.7158 0.1333 19 6 1.5477 -9.6420 -1.3233 20 6 0.9972 -8.2538 -0.9798 21 1 -0.0639 -8.3322 -0.7429 22 6 1.1848 -7.3202 -2.1772 23 6 0.2690 -7.7652 -3.3192 24 8 0.3472 -6.8201 -4.3883 25 1 -0.4851 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8720 -3.6043 0.8894 29 1 2.8720 -3.6043 -0.8905 30 1 0.8540 -5.0446 -0.8914 31 1 0.8535 -5.0451 0.8885 32 1 2.1426 -7.7602 2.2280 33 1 0.5621 -8.4383 1.7694 34 1 3.2905 -9.6776 1.1763 35 1 2.1139 -10.2551 2.3842 36 1 0.9831 -10.0634 -2.1550 37 1 2.5996 -9.5604 -1.5972 38 1 2.2228 -7.3578 -2.5081 39 1 0.9331 -6.3005 -1.8858 40 1 -0.7583 -7.8229 -2.9597 41 1 0.5844 -8.7453 -3.6771 42 1 -0.2095 -7.0389 -5.1481 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330496933.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:54 Heat of formation + Delta-G solvation = -146.059668 kcal Electronic energy + Delta-G solvation = -24398.555000 eV Core-core repulsion = 20824.064761 eV Total energy + Delta-G solvation = -3574.490239 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.69754 -38.42849 -37.55299 -37.11900 -36.53396 -34.38485 -34.10178 -30.76045 -29.98029 -29.40600 -25.74111 -25.32877 -23.60619 -22.83296 -22.02913 -20.16278 -18.95033 -18.59314 -17.93530 -17.64842 -17.39391 -17.27944 -16.67746 -16.48221 -16.04386 -15.69929 -15.64955 -15.04829 -14.80216 -14.61044 -14.55159 -14.19481 -13.96199 -13.73355 -13.72318 -13.36807 -13.27073 -13.07795 -12.85726 -12.80875 -12.69531 -12.67731 -12.32335 -12.13711 -11.99241 -11.75796 -11.52389 -11.40200 -11.13887 -10.81350 -10.75191 -10.59941 -10.30843 -8.70374 -8.24475 -6.35774 -0.89731 0.75083 1.38655 1.39266 1.47461 1.48540 1.52691 2.38410 2.64385 2.97362 3.03117 3.09094 3.54443 3.62297 3.70678 3.79622 3.91981 3.98609 4.08077 4.17015 4.28305 4.32912 4.39789 4.48460 4.50072 4.57955 4.62254 4.74355 4.80597 4.81255 4.90318 5.01450 5.04195 5.35198 5.42248 5.47765 5.58805 5.76683 6.16986 6.79517 6.98071 7.33740 8.87291 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.018032 B = 0.003450 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.418708 B = 8114.653467 C = 9039.786734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.553 4.553 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.104 4.104 11 C -0.613 4.613 12 S 2.614 3.386 13 O -0.983 6.983 14 O -0.973 6.973 15 N -0.996 5.996 16 C 0.107 3.893 17 C -0.097 4.097 18 S -0.267 6.267 19 C -0.093 4.093 20 C 0.165 3.835 21 H 0.119 0.881 22 C -0.191 4.191 23 C 0.084 3.916 24 O -0.599 6.599 25 H 0.265 0.735 26 H 0.001 0.999 27 H 0.005 0.995 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.142 0.858 31 H 0.148 0.852 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.081 0.919 38 H 0.114 0.886 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.823 -23.700 -1.753 23.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.591 4.591 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.143 4.143 11 C -0.743 4.743 12 S 2.712 3.288 13 O -0.974 6.974 14 O -0.963 6.963 15 N -0.834 5.834 16 C -0.019 4.019 17 C -0.247 4.247 18 S -0.039 6.039 19 C -0.242 4.242 20 C 0.057 3.943 21 H 0.136 0.864 22 C -0.231 4.231 23 C 0.006 3.994 24 O -0.408 6.408 25 H 0.074 0.926 26 H 0.019 0.981 27 H 0.023 0.977 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.160 0.840 31 H 0.166 0.834 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.096 0.904 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.100 0.900 38 H 0.132 0.868 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -1.093 -24.381 -1.299 24.440 hybrid contribution -0.090 2.222 -0.455 2.270 sum -1.183 -22.159 -1.754 22.260 Atomic orbital electron populations 1.70073 1.07629 1.27883 1.51313 1.25935 0.95826 1.03241 0.94493 0.85422 0.79052 0.78773 0.77980 1.18805 1.20195 1.20054 1.21748 0.93701 0.92477 1.51141 0.92225 1.18951 0.93958 0.91814 0.95896 1.21297 0.98656 0.92442 1.01922 1.30742 1.16648 1.13947 1.12965 1.04826 0.75596 0.75228 0.73139 1.93501 1.66662 1.86676 1.50532 1.93536 1.76229 1.85005 1.41545 1.57495 1.66440 1.43330 1.16182 1.21802 1.04301 0.92835 0.82941 1.23889 1.01643 0.97777 1.01375 1.86827 1.75962 1.32977 1.08141 1.23991 1.05648 0.96025 0.98584 1.21065 0.98042 0.91914 0.83251 0.86354 1.22933 1.05250 0.99004 0.95905 1.22106 0.98691 0.91830 0.86786 1.86495 1.71655 1.52032 1.30609 0.92582 0.98069 0.97705 0.91364 0.91964 0.84048 0.83412 0.87351 0.87049 0.90392 0.84203 0.84286 0.90030 0.86813 0.91625 0.91307 0.90984 0.75048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.55 -31.78 9.11 25.60 0.23 -31.55 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.68 4.97 29.85 0.15 1.83 16 10 C -0.10 -4.32 5.16 30.59 0.16 -4.16 16 11 C -0.61 -18.98 5.85 71.98 0.42 -18.56 16 12 S 2.61 75.35 4.79 -56.49 -0.27 75.08 16 13 O -0.98 -33.10 16.27 -127.65 -2.08 -35.17 16 14 O -0.97 -32.45 13.90 -127.65 -1.77 -34.22 16 15 N -1.00 -20.43 3.02 -493.10 -1.49 -21.92 16 16 C 0.11 1.76 6.18 86.48 0.53 2.30 16 17 C -0.10 -1.49 6.67 72.06 0.48 -1.01 16 18 S -0.27 -4.39 22.29 -56.49 -1.26 -5.65 16 19 C -0.09 -1.44 5.70 72.06 0.41 -1.03 16 20 C 0.16 2.82 2.73 45.09 0.12 2.95 16 21 H 0.12 1.50 8.11 -2.38 -0.02 1.48 16 22 C -0.19 -4.13 3.51 30.59 0.11 -4.03 16 23 C 0.08 1.35 6.74 71.98 0.48 1.83 16 24 O -0.60 -12.64 13.66 -148.98 -2.04 -14.68 16 25 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 26 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 27 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 28 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.14 4.11 5.73 -2.39 -0.01 4.10 16 31 H 0.15 3.94 8.14 -2.39 -0.02 3.92 16 32 H 0.11 1.91 6.63 -2.39 -0.02 1.89 16 33 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.14 1.46 6.94 -2.39 -0.02 1.44 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.11 3.08 5.60 -2.75 -0.02 3.06 16 39 H 0.07 1.62 4.52 -2.39 -0.01 1.61 16 40 H 0.07 0.80 8.12 -2.39 -0.02 0.79 16 41 H 0.07 0.80 7.00 -2.39 -0.02 0.78 16 42 H 0.40 4.23 9.12 -74.06 -0.68 3.55 16 Total: -1.00 -76.89 351.25 -2.68 -79.57 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.35 Total: 16.98 kcal Atomic # 6 Polarization: -54.34 SS G_CDS: 3.56 Total: -50.78 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -1.20 Total: -77.55 kcal Atomic # 8 Polarization: -78.19 SS G_CDS: -5.89 Total: -84.08 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 70.96 SS G_CDS: -1.53 Total: 69.43 kcal Total: -76.89 -2.68 -79.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330496933.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.492 kcal (2) G-P(sol) polarization free energy of solvation -76.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds