Wall clock time and date at job start Fri Apr 10 2020 14:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86808 * 119.99771 * 2 1 4 4 H 1.48497 * 109.46795 * 270.00246 * 3 2 1 5 5 H 1.48504 * 109.47075 * 30.00226 * 3 2 1 6 6 H 1.48493 * 109.46857 * 150.00249 * 3 2 1 7 7 C 1.38724 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99980 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00194 * 359.97438 * 7 2 1 10 10 C 1.76193 * 100.00426 * 174.82789 * 9 7 2 11 11 C 1.39227 * 120.01984 * 93.80241 * 10 9 7 12 12 C 1.38141 * 120.19979 * 179.97438 * 11 10 9 13 13 C 1.38086 * 120.24360 * 0.04717 * 12 11 10 14 14 C 1.39631 * 120.03825 * 359.95650 * 13 12 11 15 15 C 1.47863 * 120.09763 * 180.02562 * 14 13 12 16 16 O 1.21547 * 120.00417 * 26.39512 * 15 14 13 17 17 N 1.34783 * 119.99742 * 206.40102 * 15 14 13 18 18 C 1.47425 * 125.64880 * 357.16370 * 17 15 14 19 19 C 1.54906 * 104.83239 * 155.83849 * 18 17 15 20 20 H 1.08998 * 111.00675 * 155.12262 * 19 18 17 21 21 O 1.42902 * 111.00344 * 278.93421 * 19 18 17 22 22 C 1.55154 * 101.58235 * 37.00783 * 19 18 17 23 23 C 1.47016 * 125.64936 * 176.85977 * 17 15 14 24 24 H 1.09001 * 109.88335 * 300.51220 * 23 17 15 25 25 C 1.52999 * 109.88260 * 61.67154 * 23 17 15 26 26 O 1.42904 * 109.47388 * 293.54680 * 25 23 17 27 27 C 1.38837 * 120.02056 * 273.53811 * 10 9 7 28 28 H 0.97001 * 119.99749 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.89785 * 0.02562 * 11 10 9 30 30 H 1.07999 * 119.87192 * 180.02562 * 12 11 10 31 31 H 1.08001 * 119.97419 * 179.97438 * 13 12 11 32 32 H 1.09006 * 110.36520 * 274.67672 * 18 17 15 33 33 H 1.09002 * 110.36639 * 36.99685 * 18 17 15 34 34 H 0.96702 * 114.00196 * 298.55184 * 21 19 18 35 35 H 1.09000 * 110.72161 * 82.85934 * 22 19 18 36 36 H 1.08996 * 110.71989 * 205.95771 * 22 19 18 37 37 H 1.08996 * 109.47144 * 53.54990 * 25 23 17 38 38 H 1.09001 * 109.47439 * 173.54822 * 25 23 17 39 39 H 0.96703 * 113.99882 * 179.97438 * 26 25 23 40 40 H 1.07996 * 120.12362 * 359.96920 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0099 -1.2014 -0.0005 8 1 3.0899 -1.2014 -0.0010 9 16 1.1290 -2.7273 -0.0005 10 6 2.4725 -3.8563 -0.1577 11 6 3.0467 -4.4184 0.9793 12 6 4.0998 -5.3044 0.8603 13 6 4.5908 -5.6378 -0.3865 14 6 4.0226 -5.0800 -1.5335 15 6 4.5469 -5.4365 -2.8693 16 8 5.0974 -6.5066 -3.0404 17 7 4.4145 -4.5748 -3.8972 18 6 3.7202 -3.2753 -3.8450 19 6 4.3539 -2.4411 -4.9861 20 1 3.6680 -1.6678 -5.3320 21 8 5.5980 -1.8714 -4.5740 22 6 4.5716 -3.5216 -6.0781 23 6 4.9440 -4.7722 -5.2544 24 1 6.0275 -4.8846 -5.2170 25 6 4.3107 -6.0144 -5.8844 26 8 4.7386 -7.1790 -5.1753 27 6 2.9557 -4.1902 -1.4158 28 1 -0.4850 0.8401 0.0004 29 1 2.6670 -4.1616 1.9571 30 1 4.5410 -5.7376 1.7458 31 1 5.4146 -6.3307 -0.4744 32 1 2.6526 -3.4084 -4.0201 33 1 3.8904 -2.7927 -2.8826 34 1 5.5234 -1.2624 -3.8265 35 1 3.6553 -3.6873 -6.6447 36 1 5.3884 -3.2395 -6.7423 37 1 3.2249 -5.9353 -5.8314 38 1 4.6189 -6.0903 -6.9272 39 1 4.3747 -8.0056 -5.5208 40 1 2.5092 -3.7595 -2.2997 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330715453.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:20 Heat of formation + Delta-G solvation = -91.394524 kcal Electronic energy + Delta-G solvation = -25482.455190 eV Core-core repulsion = 21774.891458 eV Total energy + Delta-G solvation = -3707.563732 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.48618 -38.55188 -37.35792 -36.52051 -35.06034 -32.59766 -32.13086 -30.46408 -30.10978 -29.47420 -25.65610 -25.57404 -23.94472 -22.38892 -21.87500 -21.02140 -19.34251 -17.98846 -17.62309 -17.32034 -16.90550 -16.19256 -15.95537 -15.40100 -14.94104 -14.72715 -14.50881 -14.47080 -14.06801 -13.95008 -13.57237 -13.34450 -12.98159 -12.83110 -12.42881 -12.24848 -12.12231 -11.76131 -11.55462 -11.34451 -11.24694 -11.21133 -11.17419 -10.84690 -10.70706 -10.27116 -9.97728 -9.90140 -9.45102 -9.23529 -9.02067 -8.55106 -8.44635 -8.00218 -6.79448 -6.37111 -4.11514 1.32923 1.68849 3.04347 3.07531 3.10701 3.19344 3.23412 3.43135 3.93957 4.03016 4.03966 4.22740 4.42905 4.50327 4.85249 4.98826 5.00717 5.10698 5.16308 5.22150 5.26119 5.39549 5.40754 5.41574 5.47170 5.54710 5.66122 5.75261 5.76605 5.85337 5.99591 6.07168 6.19772 6.45143 6.65852 6.75289 6.91136 7.23454 7.48070 7.52307 7.68052 7.74086 8.23599 8.51155 9.08205 10.69247 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.012471 B = 0.004772 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.694420 B = 5866.301239 C = 7308.863196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.075 3.925 3 Si 0.918 3.082 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.520 4.520 8 H 0.075 0.925 9 S -0.039 6.039 10 C -0.107 4.107 11 C -0.060 4.060 12 C -0.140 4.140 13 C -0.065 4.065 14 C -0.145 4.145 15 C 0.572 3.428 16 O -0.501 6.501 17 N -0.607 5.607 18 C 0.058 3.942 19 C 0.090 3.910 20 H 0.085 0.915 21 O -0.559 6.559 22 C -0.118 4.118 23 C 0.145 3.855 24 H 0.082 0.918 25 C 0.063 3.937 26 O -0.533 6.533 27 C -0.065 4.065 28 H 0.270 0.730 29 H 0.130 0.870 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.386 0.614 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.044 0.956 38 H 0.048 0.952 39 H 0.363 0.637 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.812 -6.658 -10.422 14.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.667 4.667 8 H 0.093 0.907 9 S 0.195 5.805 10 C -0.218 4.218 11 C -0.081 4.081 12 C -0.160 4.160 13 C -0.085 4.085 14 C -0.150 4.150 15 C 0.362 3.638 16 O -0.376 6.376 17 N -0.342 5.342 18 C -0.065 4.065 19 C 0.030 3.970 20 H 0.103 0.897 21 O -0.366 6.366 22 C -0.156 4.156 23 C 0.041 3.959 24 H 0.100 0.900 25 C -0.016 4.016 26 O -0.336 6.336 27 C -0.086 4.086 28 H 0.080 0.920 29 H 0.147 0.853 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.235 0.765 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.209 0.791 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.330 -7.269 -10.486 14.243 hybrid contribution 1.165 1.254 0.054 1.713 sum 7.495 -6.015 -10.433 14.184 Atomic orbital electron populations 1.69989 1.05903 1.27677 1.46868 1.24987 0.95071 0.99004 0.94409 0.86166 0.79585 0.81386 0.78463 1.20171 1.20674 1.19551 1.22813 0.94810 0.90185 1.58939 0.90700 1.83647 1.04414 0.97124 1.95280 1.22765 1.02837 1.02231 0.93962 1.21928 0.93556 0.93839 0.98825 1.21109 0.98151 0.99764 0.96972 1.21110 0.98724 0.97344 0.91283 1.19895 1.00137 1.02025 0.92919 1.18051 0.79424 0.83275 0.83069 1.90818 1.42323 1.21518 1.82900 1.48248 1.56366 1.19647 1.09967 1.23532 0.97059 0.84726 1.01211 1.22956 0.86174 0.94309 0.93557 0.89708 1.86437 1.30524 1.64798 1.54802 1.22680 1.03548 0.92434 0.96967 1.21470 0.99246 0.93070 0.82075 0.90009 1.22575 0.97658 0.87003 0.94356 1.87012 1.73332 1.15217 1.58058 1.22388 0.94025 0.93796 0.98375 0.92039 0.85252 0.85850 0.85699 0.89769 0.88544 0.76542 0.88913 0.88847 0.93792 0.93369 0.79145 0.84357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.03 13.22 55.49 0.73 -23.29 16 2 C 0.07 1.95 5.49 -17.46 -0.10 1.85 16 3 Si 0.92 19.94 29.55 -169.99 -5.02 14.91 16 4 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.52 -13.62 9.46 30.91 0.29 -13.33 16 8 H 0.07 1.94 7.79 -52.48 -0.41 1.53 16 9 S -0.04 -0.94 21.40 -107.50 -2.30 -3.24 16 10 C -0.11 -2.21 5.45 -38.99 -0.21 -2.42 16 11 C -0.06 -1.11 9.79 -39.25 -0.38 -1.49 16 12 C -0.14 -2.24 10.02 -39.67 -0.40 -2.64 16 13 C -0.07 -1.10 9.59 -39.12 -0.38 -1.48 16 14 C -0.15 -2.60 5.70 -105.00 -0.60 -3.20 16 15 C 0.57 10.22 7.43 -12.32 -0.09 10.13 16 16 O -0.50 -10.04 13.77 -19.00 -0.26 -10.31 16 17 N -0.61 -9.07 3.07 -164.12 -0.50 -9.58 16 18 C 0.06 0.76 4.74 -2.53 -0.01 0.75 16 19 C 0.09 0.98 4.43 -24.59 -0.11 0.87 16 20 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 21 O -0.56 -6.75 13.47 -35.23 -0.47 -7.22 16 22 C -0.12 -1.13 6.20 -24.91 -0.15 -1.28 16 23 C 0.15 1.84 3.32 -66.96 -0.22 1.62 16 24 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 25 C 0.06 0.72 6.47 37.16 0.24 0.96 16 26 O -0.53 -7.49 10.23 -59.56 -0.61 -8.10 16 27 C -0.06 -1.21 7.69 -38.92 -0.30 -1.51 16 28 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 30 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.13 1.96 7.86 -52.49 -0.41 1.55 16 32 H 0.08 1.06 7.26 -51.93 -0.38 0.68 16 33 H 0.10 1.44 6.20 -51.93 -0.32 1.12 16 34 H 0.39 3.69 9.11 45.56 0.42 4.11 16 35 H 0.09 0.68 7.86 -51.93 -0.41 0.27 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.36 3.49 9.12 45.56 0.42 3.90 16 40 H 0.14 2.47 4.53 -52.49 -0.24 2.23 16 LS Contribution 346.70 15.07 5.22 5.22 Total: -1.00 -33.61 346.70 -9.06 -42.68 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -3.43 Total: 10.09 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -2.42 Total: -11.16 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.23 Total: -32.87 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -1.35 Total: -25.63 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -2.30 Total: -3.24 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.61 -9.06 -42.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330715453.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.717 kcal (2) G-P(sol) polarization free energy of solvation -33.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds