Wall clock time and date at job start Fri Apr 10 2020 14:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86808 * 119.99771 * 2 1 4 4 H 1.48497 * 109.46795 * 270.00246 * 3 2 1 5 5 H 1.48504 * 109.47075 * 30.00226 * 3 2 1 6 6 H 1.48493 * 109.46857 * 150.00249 * 3 2 1 7 7 C 1.38724 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99980 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00194 * 359.97438 * 7 2 1 10 10 C 1.76193 * 100.00426 * 174.82789 * 9 7 2 11 11 C 1.39227 * 120.01984 * 93.80241 * 10 9 7 12 12 C 1.38141 * 120.19979 * 179.97438 * 11 10 9 13 13 C 1.38086 * 120.24360 * 0.04717 * 12 11 10 14 14 C 1.39631 * 120.03825 * 359.95650 * 13 12 11 15 15 C 1.47863 * 120.09763 * 180.02562 * 14 13 12 16 16 O 1.21547 * 120.00417 * 26.39512 * 15 14 13 17 17 N 1.34783 * 119.99742 * 206.40102 * 15 14 13 18 18 C 1.47425 * 125.64880 * 357.16370 * 17 15 14 19 19 C 1.54906 * 104.83239 * 155.83849 * 18 17 15 20 20 H 1.08998 * 111.00675 * 155.12262 * 19 18 17 21 21 O 1.42902 * 111.00344 * 278.93421 * 19 18 17 22 22 C 1.55154 * 101.58235 * 37.00783 * 19 18 17 23 23 C 1.47016 * 125.64936 * 176.85977 * 17 15 14 24 24 H 1.09001 * 109.88335 * 300.51220 * 23 17 15 25 25 C 1.52999 * 109.88260 * 61.67154 * 23 17 15 26 26 O 1.42904 * 109.47388 * 293.54680 * 25 23 17 27 27 C 1.38837 * 120.02056 * 273.53811 * 10 9 7 28 28 H 0.97001 * 119.99749 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.89785 * 0.02562 * 11 10 9 30 30 H 1.07999 * 119.87192 * 180.02562 * 12 11 10 31 31 H 1.08001 * 119.97419 * 179.97438 * 13 12 11 32 32 H 1.09006 * 110.36520 * 274.67672 * 18 17 15 33 33 H 1.09002 * 110.36639 * 36.99685 * 18 17 15 34 34 H 0.96702 * 114.00196 * 298.55184 * 21 19 18 35 35 H 1.09000 * 110.72161 * 82.85934 * 22 19 18 36 36 H 1.08996 * 110.71989 * 205.95771 * 22 19 18 37 37 H 1.08996 * 109.47144 * 53.54990 * 25 23 17 38 38 H 1.09001 * 109.47439 * 173.54822 * 25 23 17 39 39 H 0.96703 * 113.99882 * 179.97438 * 26 25 23 40 40 H 1.07996 * 120.12362 * 359.96920 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0099 -1.2014 -0.0005 8 1 3.0899 -1.2014 -0.0010 9 16 1.1290 -2.7273 -0.0005 10 6 2.4725 -3.8563 -0.1577 11 6 3.0467 -4.4184 0.9793 12 6 4.0998 -5.3044 0.8603 13 6 4.5908 -5.6378 -0.3865 14 6 4.0226 -5.0800 -1.5335 15 6 4.5469 -5.4365 -2.8693 16 8 5.0974 -6.5066 -3.0404 17 7 4.4145 -4.5748 -3.8972 18 6 3.7202 -3.2753 -3.8450 19 6 4.3539 -2.4411 -4.9861 20 1 3.6680 -1.6678 -5.3320 21 8 5.5980 -1.8714 -4.5740 22 6 4.5716 -3.5216 -6.0781 23 6 4.9440 -4.7722 -5.2544 24 1 6.0275 -4.8846 -5.2170 25 6 4.3107 -6.0144 -5.8844 26 8 4.7386 -7.1790 -5.1753 27 6 2.9557 -4.1902 -1.4158 28 1 -0.4850 0.8401 0.0004 29 1 2.6670 -4.1616 1.9571 30 1 4.5410 -5.7376 1.7458 31 1 5.4146 -6.3307 -0.4744 32 1 2.6526 -3.4084 -4.0201 33 1 3.8904 -2.7927 -2.8826 34 1 5.5234 -1.2624 -3.8265 35 1 3.6553 -3.6873 -6.6447 36 1 5.3884 -3.2395 -6.7423 37 1 3.2249 -5.9353 -5.8314 38 1 4.6189 -6.0903 -6.9272 39 1 4.3747 -8.0056 -5.5208 40 1 2.5092 -3.7595 -2.2997 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330715453.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:19 Heat of formation + Delta-G solvation = -115.784365 kcal Electronic energy + Delta-G solvation = -25483.512813 eV Core-core repulsion = 21774.891458 eV Total energy + Delta-G solvation = -3708.621355 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.66699 -39.79094 -38.63838 -37.51863 -36.09831 -34.59819 -33.31387 -31.91193 -31.31559 -30.49175 -27.68280 -26.57733 -25.17740 -23.74472 -23.03074 -22.08387 -20.58608 -19.66785 -18.78055 -18.43554 -18.01635 -17.50506 -17.11742 -16.87489 -16.70750 -16.06247 -15.85937 -15.51684 -15.16076 -15.07810 -14.89102 -14.68561 -14.43750 -13.91932 -13.78954 -13.45588 -13.21705 -13.05693 -13.00493 -12.92015 -12.79716 -12.49803 -12.37639 -12.27392 -11.78960 -11.69520 -11.25292 -11.17004 -10.85291 -10.79840 -10.66314 -9.94715 -9.71277 -9.56733 -8.76183 -8.33850 -6.13914 -0.10330 0.24668 1.35119 1.41278 1.50656 1.66048 1.83412 1.92935 2.26848 2.76286 2.99907 3.11550 3.16573 3.42730 3.48508 3.53983 3.75493 3.95017 4.07138 4.08092 4.19998 4.26779 4.35609 4.42015 4.45538 4.50064 4.59781 4.65183 4.65972 4.77978 4.86016 4.91286 5.10616 5.20643 5.31895 5.42704 5.43877 5.46664 5.83932 6.21813 6.43256 6.72351 6.97385 7.07177 7.19021 8.72717 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.012471 B = 0.004772 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.694420 B = 5866.301239 C = 7308.863196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.027 3.973 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.531 4.531 8 H 0.069 0.931 9 S -0.084 6.084 10 C -0.126 4.126 11 C -0.069 4.069 12 C -0.124 4.124 13 C -0.065 4.065 14 C -0.152 4.152 15 C 0.566 3.434 16 O -0.530 6.530 17 N -0.604 5.604 18 C 0.054 3.946 19 C 0.092 3.908 20 H 0.109 0.891 21 O -0.574 6.574 22 C -0.107 4.107 23 C 0.135 3.865 24 H 0.059 0.941 25 C 0.063 3.937 26 O -0.566 6.566 27 C -0.063 4.063 28 H 0.273 0.727 29 H 0.134 0.866 30 H 0.163 0.837 31 H 0.139 0.861 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.394 0.606 35 H 0.122 0.878 36 H 0.106 0.894 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.379 0.621 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.937 -6.263 -11.562 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.678 4.678 8 H 0.087 0.913 9 S 0.151 5.849 10 C -0.237 4.237 11 C -0.090 4.090 12 C -0.144 4.144 13 C -0.084 4.084 14 C -0.157 4.157 15 C 0.355 3.645 16 O -0.407 6.407 17 N -0.338 5.338 18 C -0.069 4.069 19 C 0.033 3.967 20 H 0.127 0.873 21 O -0.383 6.383 22 C -0.144 4.144 23 C 0.032 3.968 24 H 0.077 0.923 25 C -0.015 4.015 26 O -0.372 6.372 27 C -0.084 4.084 28 H 0.082 0.918 29 H 0.152 0.848 30 H 0.181 0.819 31 H 0.157 0.843 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.244 0.756 35 H 0.140 0.860 36 H 0.125 0.875 37 H 0.067 0.933 38 H 0.099 0.901 39 H 0.227 0.773 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.445 -6.866 -11.651 15.438 hybrid contribution 0.865 1.023 0.414 1.403 sum 8.310 -5.842 -11.237 15.148 Atomic orbital electron populations 1.70106 1.07502 1.28693 1.47898 1.25885 0.95843 1.02472 0.93697 0.85121 0.78076 0.76759 0.79152 1.18564 1.20406 1.19264 1.23018 0.94650 0.91257 1.58913 0.91257 1.83594 1.07558 0.98202 1.95565 1.22557 1.02852 1.02692 0.95596 1.22046 0.94249 0.94313 0.98346 1.21417 0.96630 0.98213 0.98091 1.21418 0.98727 0.96941 0.91283 1.20058 0.99913 1.01857 0.93846 1.18076 0.79419 0.83415 0.83587 1.90798 1.43829 1.22628 1.83414 1.48318 1.55503 1.19570 1.10421 1.23620 0.97540 0.84293 1.01400 1.23103 0.86056 0.94843 0.92735 0.87308 1.86417 1.31414 1.65135 1.55309 1.22750 1.05437 0.89927 0.96301 1.21739 0.98038 0.95542 0.81443 0.92324 1.22673 0.97746 0.85573 0.95553 1.86960 1.74044 1.16740 1.59436 1.22314 0.94235 0.94018 0.97840 0.91808 0.84767 0.81904 0.84287 0.89187 0.90694 0.75612 0.85998 0.87529 0.93318 0.90124 0.77337 0.84158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.69 13.22 21.63 0.29 -50.40 16 2 C 0.03 1.40 5.49 84.84 0.47 1.86 16 3 Si 0.99 40.61 29.55 68.60 2.03 42.64 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 6 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.53 -28.26 9.46 67.94 0.64 -27.61 16 8 H 0.07 3.64 7.79 -2.91 -0.02 3.62 16 9 S -0.08 -4.19 21.40 -56.49 -1.21 -5.40 16 10 C -0.13 -5.25 5.45 22.65 0.12 -5.13 16 11 C -0.07 -2.48 9.79 22.48 0.22 -2.26 16 12 C -0.12 -3.72 10.02 22.21 0.22 -3.50 16 13 C -0.06 -2.09 9.59 22.57 0.22 -1.88 16 14 C -0.15 -5.42 5.70 -20.11 -0.11 -5.53 16 15 C 0.57 20.18 7.43 86.79 0.64 20.83 16 16 O -0.53 -21.24 13.77 19.39 0.27 -20.97 16 17 N -0.60 -17.78 3.07 -791.43 -2.43 -20.21 16 18 C 0.05 1.40 4.74 86.85 0.41 1.81 16 19 C 0.09 1.82 4.43 31.98 0.14 1.96 16 20 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 21 O -0.57 -13.08 13.47 -148.98 -2.01 -15.08 16 22 C -0.11 -1.73 6.20 31.78 0.20 -1.54 16 23 C 0.14 3.26 3.32 45.34 0.15 3.41 16 24 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 25 C 0.06 1.32 6.47 71.98 0.47 1.79 16 26 O -0.57 -15.50 10.23 -125.72 -1.29 -16.79 16 27 C -0.06 -2.39 7.69 22.70 0.17 -2.22 16 28 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 29 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 30 H 0.16 3.59 8.06 -2.91 -0.02 3.56 16 31 H 0.14 4.13 7.86 -2.91 -0.02 4.10 16 32 H 0.09 2.21 7.26 -2.38 -0.02 2.19 16 33 H 0.07 2.27 6.20 -2.39 -0.01 2.26 16 34 H 0.39 7.21 9.11 -74.06 -0.67 6.53 16 35 H 0.12 1.30 7.86 -2.39 -0.02 1.28 16 36 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.38 6.99 9.12 -74.06 -0.68 6.31 16 40 H 0.14 5.13 4.53 -2.91 -0.01 5.11 16 Total: -1.00 -73.62 346.70 -0.64 -74.26 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: -0.25 Total: 29.95 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 3.96 Total: -18.00 kcal Atomic # 7 Polarization: -68.47 SS G_CDS: -2.14 Total: -70.61 kcal Atomic # 8 Polarization: -49.81 SS G_CDS: -3.03 Total: -52.84 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Atomic # 16 Polarization: -4.19 SS G_CDS: -1.21 Total: -5.40 kcal Total: -73.62 -0.64 -74.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330715453.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.521 kcal (2) G-P(sol) polarization free energy of solvation -73.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds