Wall clock time and date at job start Fri Apr 10 2020 14:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 120.00010 * 2 1 4 4 H 1.48503 * 109.46683 * 240.00255 * 3 2 1 5 5 H 1.48495 * 109.46972 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47092 * 120.00081 * 3 2 1 7 7 C 1.38729 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00442 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99740 * 0.02562 * 7 2 1 10 10 C 1.76200 * 100.00053 * 185.25450 * 9 7 2 11 11 C 1.39229 * 120.01929 * 271.77051 * 10 9 7 12 12 C 1.38132 * 120.20440 * 179.72108 * 11 10 9 13 13 C 1.38088 * 120.24169 * 0.25959 * 12 11 10 14 14 C 1.39633 * 120.03596 * 359.97438 * 13 12 11 15 15 C 1.47867 * 120.09634 * 179.97438 * 14 13 12 16 16 O 1.21559 * 119.99859 * 340.53244 * 15 14 13 17 17 N 1.34767 * 119.99993 * 160.53804 * 15 14 13 18 18 C 1.47427 * 125.65036 * 353.60582 * 17 15 14 19 19 C 1.54689 * 104.94451 * 204.07307 * 18 17 15 20 20 H 1.09001 * 111.13844 * 205.09485 * 19 18 17 21 21 O 1.42897 * 110.81385 * 81.31582 * 19 18 17 22 22 C 1.55161 * 101.67607 * 323.27642 * 19 18 17 23 23 C 1.47022 * 125.64853 * 173.91174 * 17 15 14 24 24 H 1.08999 * 109.88502 * 59.33123 * 23 17 15 25 25 C 1.53000 * 109.88548 * 298.32070 * 23 17 15 26 26 O 1.42903 * 109.47185 * 66.45202 * 25 23 17 27 27 C 1.38836 * 120.02598 * 92.00582 * 10 9 7 28 28 H 0.97002 * 120.00143 * 359.97438 * 1 2 3 29 29 H 1.08008 * 119.89457 * 0.02562 * 11 10 9 30 30 H 1.08000 * 119.87688 * 180.23401 * 12 11 10 31 31 H 1.08001 * 119.97459 * 179.97438 * 13 12 11 32 32 H 1.09003 * 110.36594 * 323.00254 * 18 17 15 33 33 H 1.08998 * 110.36553 * 85.32564 * 18 17 15 34 34 H 0.96705 * 114.00062 * 67.79983 * 21 19 18 35 35 H 1.09004 * 110.71849 * 276.97216 * 22 19 18 36 36 H 1.09004 * 110.72001 * 153.69973 * 22 19 18 37 37 H 1.08998 * 109.47681 * 186.45396 * 25 23 17 38 38 H 1.09001 * 109.47066 * 306.45882 * 25 23 17 39 39 H 0.96696 * 114.00404 * 180.02562 * 26 25 23 40 40 H 1.07999 * 120.11725 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0099 -1.2014 0.0005 8 1 3.0899 -1.2015 0.0001 9 16 1.1289 -2.7273 0.0005 10 6 2.4722 -3.8563 0.1602 11 6 3.1232 -4.3295 -0.9759 12 6 4.1805 -5.2101 -0.8549 13 6 4.5955 -5.6313 0.3930 14 6 3.9467 -5.1669 1.5389 15 6 4.3896 -5.6175 2.8758 16 8 5.0537 -6.6296 2.9869 17 7 4.0569 -4.9061 3.9710 18 6 3.3751 -3.5990 3.9723 19 6 3.7690 -2.9449 5.3176 20 1 3.0218 -2.2173 5.6346 21 8 5.0618 -2.3425 5.2300 22 6 3.7900 -4.1708 6.2686 23 6 4.3196 -5.3022 5.3624 24 1 5.3910 -5.4317 5.5150 25 6 3.5876 -6.6079 5.6788 26 8 4.1519 -7.6696 4.9064 27 6 2.8791 -4.2784 1.4187 28 1 -0.4850 0.8400 0.0004 29 1 2.8037 -4.0031 -1.9546 30 1 4.6841 -5.5709 -1.7395 31 1 5.4224 -6.3203 0.4826 32 1 3.7217 -2.9895 3.1378 33 1 2.2948 -3.7347 3.9211 34 1 5.0980 -1.5720 4.6467 35 1 2.7855 -4.4000 6.6245 36 1 4.4668 -3.9981 7.1054 37 1 3.6920 -6.8352 6.7397 38 1 2.5312 -6.5012 5.4323 39 1 3.7354 -8.5293 5.0561 40 1 2.3738 -3.9156 2.3016 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330715454.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:22 Heat of formation + Delta-G solvation = -90.673722 kcal Electronic energy + Delta-G solvation = -25422.859945 eV Core-core repulsion = 21715.327469 eV Total energy + Delta-G solvation = -3707.532476 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.49310 -38.55073 -37.35635 -36.56823 -35.09695 -32.58835 -32.14790 -30.44991 -30.09986 -29.50437 -25.64896 -25.59714 -23.95302 -22.38871 -21.86137 -21.01551 -19.34228 -17.99628 -17.66375 -17.33846 -16.96465 -16.23563 -15.94059 -15.36892 -14.93158 -14.71803 -14.50186 -14.46291 -14.09109 -13.89723 -13.61521 -13.32120 -12.95756 -12.89207 -12.45541 -12.24724 -12.10229 -11.79200 -11.53615 -11.35962 -11.23798 -11.20352 -11.16015 -10.84658 -10.72083 -10.26665 -9.99439 -9.93886 -9.48485 -9.22946 -9.00517 -8.55975 -8.43456 -7.99846 -6.79092 -6.36197 -4.10732 1.31362 1.69690 3.04847 3.08810 3.13538 3.19325 3.24227 3.43260 3.92911 4.01837 4.05221 4.25140 4.39786 4.50464 4.86746 4.99411 5.00084 5.07941 5.14552 5.21048 5.26537 5.38626 5.40705 5.41778 5.48387 5.53504 5.64513 5.73494 5.77220 5.87079 5.99780 6.07389 6.19609 6.45963 6.67078 6.76214 6.91822 7.24243 7.49019 7.50741 7.68466 7.70430 8.24535 8.51185 9.09142 10.70121 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.012671 B = 0.004619 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.242875 B = 6061.021656 C = 7408.867841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.075 3.925 3 Si 0.919 3.081 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.074 0.926 9 S -0.039 6.039 10 C -0.108 4.108 11 C -0.059 4.059 12 C -0.141 4.141 13 C -0.064 4.064 14 C -0.147 4.147 15 C 0.576 3.424 16 O -0.507 6.507 17 N -0.607 5.607 18 C 0.061 3.939 19 C 0.089 3.911 20 H 0.086 0.914 21 O -0.559 6.559 22 C -0.118 4.118 23 C 0.145 3.855 24 H 0.082 0.918 25 C 0.064 3.936 26 O -0.539 6.539 27 C -0.066 4.066 28 H 0.270 0.730 29 H 0.129 0.871 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.385 0.615 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.045 0.955 39 H 0.366 0.634 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.121 -7.729 10.694 14.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.134 4.134 3 Si 0.745 3.255 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.668 4.668 8 H 0.092 0.908 9 S 0.195 5.805 10 C -0.219 4.219 11 C -0.080 4.080 12 C -0.161 4.161 13 C -0.083 4.083 14 C -0.152 4.152 15 C 0.366 3.634 16 O -0.382 6.382 17 N -0.343 5.343 18 C -0.062 4.062 19 C 0.030 3.970 20 H 0.104 0.896 21 O -0.365 6.365 22 C -0.156 4.156 23 C 0.041 3.959 24 H 0.100 0.900 25 C -0.016 4.016 26 O -0.342 6.342 27 C -0.087 4.087 28 H 0.080 0.920 29 H 0.147 0.853 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.234 0.766 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.211 0.789 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.697 -8.369 10.784 14.436 hybrid contribution 1.200 1.304 -0.165 1.780 sum 5.897 -7.065 10.619 14.052 Atomic orbital electron populations 1.69977 1.05889 1.27775 1.46859 1.24981 0.95071 0.98988 0.94394 0.86213 0.79241 0.81036 0.79027 1.19828 1.20759 1.19871 1.22779 0.94796 0.90200 1.59013 0.90753 1.83619 1.04457 0.97118 1.95297 1.22769 1.02879 1.02276 0.93971 1.21955 0.93299 0.93849 0.98934 1.21115 0.98406 0.99622 0.96979 1.21140 0.98469 0.97413 0.91277 1.19896 1.00115 1.02267 0.92887 1.18005 0.79523 0.82938 0.82962 1.90790 1.37387 1.24281 1.85705 1.48200 1.60077 1.20860 1.05138 1.23451 0.97859 0.85350 0.99561 1.22932 0.85856 0.94247 0.94005 0.89624 1.86453 1.30343 1.49044 1.70674 1.22686 1.02838 0.92366 0.97723 1.21466 1.00560 0.92290 0.81582 0.89952 1.22601 0.96393 0.88328 0.94255 1.86938 1.61675 1.18640 1.66911 1.22506 0.94231 0.93521 0.98438 0.91996 0.85266 0.85860 0.85601 0.88815 0.89658 0.76627 0.88877 0.88818 0.93220 0.93680 0.78870 0.84094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.09 13.22 55.49 0.73 -23.35 16 2 C 0.07 1.97 5.49 -17.46 -0.10 1.87 16 3 Si 0.92 20.11 29.55 -169.99 -5.02 15.09 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.52 -13.74 9.46 30.91 0.29 -13.44 16 8 H 0.07 1.95 7.79 -52.49 -0.41 1.54 16 9 S -0.04 -0.95 21.41 -107.50 -2.30 -3.25 16 10 C -0.11 -2.24 5.45 -38.99 -0.21 -2.45 16 11 C -0.06 -1.10 9.79 -39.25 -0.38 -1.48 16 12 C -0.14 -2.28 10.02 -39.68 -0.40 -2.68 16 13 C -0.06 -1.08 9.59 -39.12 -0.38 -1.46 16 14 C -0.15 -2.65 5.75 -105.00 -0.60 -3.25 16 15 C 0.58 10.35 7.33 -12.32 -0.09 10.26 16 16 O -0.51 -10.26 14.12 -18.25 -0.26 -10.52 16 17 N -0.61 -9.10 3.07 -164.24 -0.50 -9.60 16 18 C 0.06 0.80 4.65 -2.65 -0.01 0.79 16 19 C 0.09 0.95 4.43 -24.70 -0.11 0.84 16 20 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 21 O -0.56 -6.57 13.46 -35.23 -0.47 -7.04 16 22 C -0.12 -1.11 6.22 -24.89 -0.15 -1.26 16 23 C 0.14 1.83 3.26 -66.95 -0.22 1.61 16 24 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 25 C 0.06 0.71 6.47 37.16 0.24 0.96 16 26 O -0.54 -7.50 10.55 -58.79 -0.62 -8.12 16 27 C -0.07 -1.24 7.86 -38.92 -0.31 -1.54 16 28 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.13 2.29 8.06 -52.48 -0.42 1.87 16 30 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.13 2.01 7.77 -52.49 -0.41 1.60 16 32 H 0.09 1.38 6.63 -51.93 -0.34 1.04 16 33 H 0.09 1.07 6.90 -51.93 -0.36 0.71 16 34 H 0.39 3.43 9.12 45.56 0.42 3.85 16 35 H 0.09 0.67 7.85 -51.93 -0.41 0.26 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.37 3.42 9.12 45.56 0.42 3.84 16 40 H 0.14 2.48 4.15 -52.49 -0.22 2.27 16 LS Contribution 346.93 15.07 5.23 5.23 Total: -1.00 -34.02 346.93 -9.05 -43.07 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -3.41 Total: 9.75 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -2.43 Total: -11.25 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.23 Total: -32.96 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -1.35 Total: -25.68 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: -0.95 SS G_CDS: -2.30 Total: -3.25 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.02 -9.05 -43.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330715454.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.604 kcal (2) G-P(sol) polarization free energy of solvation -34.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds