Wall clock time and date at job start Fri Apr 10 2020 14:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 120.00010 * 2 1 4 4 H 1.48503 * 109.46683 * 240.00255 * 3 2 1 5 5 H 1.48495 * 109.46972 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47092 * 120.00081 * 3 2 1 7 7 C 1.38729 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00442 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99740 * 0.02562 * 7 2 1 10 10 C 1.76200 * 100.00053 * 185.25450 * 9 7 2 11 11 C 1.39229 * 120.01929 * 271.77051 * 10 9 7 12 12 C 1.38132 * 120.20440 * 179.72108 * 11 10 9 13 13 C 1.38088 * 120.24169 * 0.25959 * 12 11 10 14 14 C 1.39633 * 120.03596 * 359.97438 * 13 12 11 15 15 C 1.47867 * 120.09634 * 179.97438 * 14 13 12 16 16 O 1.21559 * 119.99859 * 340.53244 * 15 14 13 17 17 N 1.34767 * 119.99993 * 160.53804 * 15 14 13 18 18 C 1.47427 * 125.65036 * 353.60582 * 17 15 14 19 19 C 1.54689 * 104.94451 * 204.07307 * 18 17 15 20 20 H 1.09001 * 111.13844 * 205.09485 * 19 18 17 21 21 O 1.42897 * 110.81385 * 81.31582 * 19 18 17 22 22 C 1.55161 * 101.67607 * 323.27642 * 19 18 17 23 23 C 1.47022 * 125.64853 * 173.91174 * 17 15 14 24 24 H 1.08999 * 109.88502 * 59.33123 * 23 17 15 25 25 C 1.53000 * 109.88548 * 298.32070 * 23 17 15 26 26 O 1.42903 * 109.47185 * 66.45202 * 25 23 17 27 27 C 1.38836 * 120.02598 * 92.00582 * 10 9 7 28 28 H 0.97002 * 120.00143 * 359.97438 * 1 2 3 29 29 H 1.08008 * 119.89457 * 0.02562 * 11 10 9 30 30 H 1.08000 * 119.87688 * 180.23401 * 12 11 10 31 31 H 1.08001 * 119.97459 * 179.97438 * 13 12 11 32 32 H 1.09003 * 110.36594 * 323.00254 * 18 17 15 33 33 H 1.08998 * 110.36553 * 85.32564 * 18 17 15 34 34 H 0.96705 * 114.00062 * 67.79983 * 21 19 18 35 35 H 1.09004 * 110.71849 * 276.97216 * 22 19 18 36 36 H 1.09004 * 110.72001 * 153.69973 * 22 19 18 37 37 H 1.08998 * 109.47681 * 186.45396 * 25 23 17 38 38 H 1.09001 * 109.47066 * 306.45882 * 25 23 17 39 39 H 0.96696 * 114.00404 * 180.02562 * 26 25 23 40 40 H 1.07999 * 120.11725 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0099 -1.2014 0.0005 8 1 3.0899 -1.2015 0.0001 9 16 1.1289 -2.7273 0.0005 10 6 2.4722 -3.8563 0.1602 11 6 3.1232 -4.3295 -0.9759 12 6 4.1805 -5.2101 -0.8549 13 6 4.5955 -5.6313 0.3930 14 6 3.9467 -5.1669 1.5389 15 6 4.3896 -5.6175 2.8758 16 8 5.0537 -6.6296 2.9869 17 7 4.0569 -4.9061 3.9710 18 6 3.3751 -3.5990 3.9723 19 6 3.7690 -2.9449 5.3176 20 1 3.0218 -2.2173 5.6346 21 8 5.0618 -2.3425 5.2300 22 6 3.7900 -4.1708 6.2686 23 6 4.3196 -5.3022 5.3624 24 1 5.3910 -5.4317 5.5150 25 6 3.5876 -6.6079 5.6788 26 8 4.1519 -7.6696 4.9064 27 6 2.8791 -4.2784 1.4187 28 1 -0.4850 0.8400 0.0004 29 1 2.8037 -4.0031 -1.9546 30 1 4.6841 -5.5709 -1.7395 31 1 5.4224 -6.3203 0.4826 32 1 3.7217 -2.9895 3.1378 33 1 2.2948 -3.7347 3.9211 34 1 5.0980 -1.5720 4.6467 35 1 2.7855 -4.4000 6.6245 36 1 4.4668 -3.9981 7.1054 37 1 3.6920 -6.8352 6.7397 38 1 2.5312 -6.5012 5.4323 39 1 3.7354 -8.5293 5.0561 40 1 2.3738 -3.9156 2.3016 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330715454.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:22 Heat of formation + Delta-G solvation = -115.548642 kcal Electronic energy + Delta-G solvation = -25423.938602 eV Core-core repulsion = 21715.327469 eV Total energy + Delta-G solvation = -3708.611133 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.67412 -39.78881 -38.64260 -37.55671 -36.12412 -34.59963 -33.33021 -31.90669 -31.30518 -30.51739 -27.68163 -26.59760 -25.18858 -23.74576 -23.01449 -22.07888 -20.57998 -19.67807 -18.79477 -18.45801 -18.07873 -17.54574 -17.11528 -16.87452 -16.66833 -16.07634 -15.83685 -15.51590 -15.12836 -15.06181 -14.92143 -14.71542 -14.40928 -13.95698 -13.79183 -13.46878 -13.20865 -13.06025 -12.99636 -12.92178 -12.80964 -12.49753 -12.37599 -12.27052 -11.78263 -11.70101 -11.26197 -11.17265 -10.92167 -10.79284 -10.67525 -9.96526 -9.70766 -9.56726 -8.76245 -8.33961 -6.13967 -0.12819 0.24575 1.34714 1.42211 1.49452 1.65825 1.85811 1.91572 2.27142 2.78146 2.99587 3.13490 3.15972 3.41964 3.47739 3.54094 3.76196 3.95599 4.07506 4.08342 4.20229 4.25303 4.35078 4.41753 4.44331 4.50623 4.60417 4.64796 4.66380 4.76995 4.85552 4.91754 5.11228 5.20198 5.31910 5.43551 5.43687 5.46426 5.83662 6.21375 6.43644 6.75317 6.95144 7.07005 7.18026 8.72318 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.012671 B = 0.004619 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.242875 B = 6061.021656 C = 7408.867841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.028 3.972 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.534 4.534 8 H 0.068 0.932 9 S -0.081 6.081 10 C -0.127 4.127 11 C -0.068 4.068 12 C -0.126 4.126 13 C -0.063 4.063 14 C -0.154 4.154 15 C 0.570 3.430 16 O -0.537 6.537 17 N -0.605 5.605 18 C 0.056 3.944 19 C 0.092 3.908 20 H 0.113 0.887 21 O -0.575 6.575 22 C -0.107 4.107 23 C 0.135 3.865 24 H 0.057 0.943 25 C 0.063 3.937 26 O -0.572 6.572 27 C -0.064 4.064 28 H 0.273 0.727 29 H 0.133 0.867 30 H 0.163 0.837 31 H 0.139 0.861 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.395 0.605 35 H 0.123 0.877 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.382 0.618 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.904 -7.428 11.843 15.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.681 4.681 8 H 0.086 0.914 9 S 0.154 5.846 10 C -0.238 4.238 11 C -0.089 4.089 12 C -0.145 4.145 13 C -0.082 4.082 14 C -0.159 4.159 15 C 0.359 3.641 16 O -0.415 6.415 17 N -0.339 5.339 18 C -0.066 4.066 19 C 0.033 3.967 20 H 0.130 0.870 21 O -0.384 6.384 22 C -0.144 4.144 23 C 0.032 3.968 24 H 0.075 0.925 25 C -0.015 4.015 26 O -0.378 6.378 27 C -0.085 4.085 28 H 0.082 0.918 29 H 0.151 0.849 30 H 0.180 0.820 31 H 0.157 0.843 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.245 0.755 35 H 0.141 0.859 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.230 0.770 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.465 -8.060 11.959 15.422 hybrid contribution 1.005 1.105 -0.521 1.583 sum 6.470 -6.955 11.437 14.868 Atomic orbital electron populations 1.70091 1.07436 1.28770 1.47789 1.25865 0.95851 1.02404 0.93683 0.85191 0.78053 0.76594 0.79400 1.19635 1.20108 1.18468 1.22992 0.94628 0.91391 1.59061 0.91402 1.83549 1.07471 0.98037 1.95571 1.22570 1.02926 1.02725 0.95597 1.22062 0.93936 0.94451 0.98440 1.21414 0.97062 0.97938 0.98081 1.21438 0.98435 0.97057 0.91307 1.20061 0.99932 1.02099 0.93779 1.18031 0.79539 0.82920 0.83598 1.90766 1.38948 1.25546 1.86197 1.48279 1.58941 1.21031 1.05618 1.23554 0.97914 0.84479 1.00686 1.23075 0.86027 0.95104 0.92509 0.86974 1.86432 1.31231 1.49717 1.70974 1.22762 1.04684 0.90036 0.96936 1.21746 0.99665 0.94582 0.80842 0.92465 1.22702 0.96100 0.86992 0.95748 1.86889 1.62736 1.20161 1.67987 1.22463 0.94455 0.93610 0.97965 0.91771 0.84903 0.81965 0.84292 0.90926 0.89113 0.75511 0.85918 0.87496 0.89954 0.93122 0.77022 0.83638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.63 13.22 21.64 0.29 -50.34 16 2 C 0.03 1.46 5.49 84.84 0.47 1.93 16 3 Si 0.99 40.89 29.55 68.60 2.03 42.92 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.53 -28.56 9.46 67.94 0.64 -27.92 16 8 H 0.07 3.60 7.79 -2.91 -0.02 3.58 16 9 S -0.08 -4.03 21.41 -56.49 -1.21 -5.24 16 10 C -0.13 -5.32 5.45 22.65 0.12 -5.19 16 11 C -0.07 -2.49 9.79 22.48 0.22 -2.27 16 12 C -0.13 -3.82 10.02 22.21 0.22 -3.60 16 13 C -0.06 -2.08 9.59 22.57 0.22 -1.86 16 14 C -0.15 -5.52 5.75 -20.11 -0.12 -5.64 16 15 C 0.57 20.48 7.33 86.79 0.64 21.11 16 16 O -0.54 -21.83 14.12 18.63 0.26 -21.57 16 17 N -0.60 -17.87 3.07 -791.83 -2.43 -20.30 16 18 C 0.06 1.44 4.65 86.78 0.40 1.85 16 19 C 0.09 1.77 4.43 31.91 0.14 1.91 16 20 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 21 O -0.58 -12.72 13.46 -148.98 -2.01 -14.73 16 22 C -0.11 -1.70 6.22 31.79 0.20 -1.50 16 23 C 0.13 3.25 3.26 45.34 0.15 3.39 16 24 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 25 C 0.06 1.31 6.47 71.98 0.47 1.78 16 26 O -0.57 -15.55 10.55 -126.45 -1.33 -16.88 16 27 C -0.06 -2.43 7.86 22.70 0.18 -2.25 16 28 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 30 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 31 H 0.14 4.21 7.77 -2.91 -0.02 4.19 16 32 H 0.07 2.17 6.63 -2.39 -0.02 2.16 16 33 H 0.09 2.22 6.90 -2.39 -0.02 2.20 16 34 H 0.39 6.65 9.12 -74.05 -0.68 5.98 16 35 H 0.12 1.26 7.85 -2.38 -0.02 1.24 16 36 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.38 6.88 9.12 -74.06 -0.68 6.20 16 40 H 0.15 5.23 4.15 -2.91 -0.01 5.22 16 Total: -1.00 -74.55 346.93 -0.71 -75.25 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: -0.25 Total: 29.14 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 3.95 Total: -18.25 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: -2.14 Total: -70.64 kcal Atomic # 8 Polarization: -50.10 SS G_CDS: -3.08 Total: -53.18 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Atomic # 16 Polarization: -4.03 SS G_CDS: -1.21 Total: -5.24 kcal Total: -74.55 -0.71 -75.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330715454.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.296 kcal (2) G-P(sol) polarization free energy of solvation -74.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds