Wall clock time and date at job start Fri Apr 10 2020 14:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 119.99894 * 2 1 4 4 H 1.48501 * 109.47202 * 270.00555 * 3 2 1 5 5 H 1.48501 * 109.47189 * 30.00340 * 3 2 1 6 6 H 1.48501 * 109.46960 * 150.00354 * 3 2 1 7 7 C 1.38729 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99754 * 179.97438 * 7 2 1 9 9 S 1.76193 * 120.00298 * 359.97438 * 7 2 1 10 10 C 1.76201 * 100.00308 * 174.21555 * 9 7 2 11 11 C 1.39223 * 120.01948 * 271.69595 * 10 9 7 12 12 C 1.38136 * 120.19750 * 179.97438 * 11 10 9 13 13 C 1.38085 * 120.24602 * 359.97438 * 12 11 10 14 14 C 1.39631 * 120.03774 * 359.97438 * 13 12 11 15 15 C 1.47862 * 120.09728 * 180.02562 * 14 13 12 16 16 O 1.21551 * 119.99562 * 170.54905 * 15 14 13 17 17 N 1.34769 * 120.00266 * 350.55597 * 15 14 13 18 18 C 1.47431 * 125.65070 * 353.84179 * 17 15 14 19 19 C 1.54905 * 104.83221 * 204.16871 * 18 17 15 20 20 H 1.08996 * 111.00985 * 81.06099 * 19 18 17 21 21 O 1.42903 * 111.00159 * 204.91698 * 19 18 17 22 22 C 1.55159 * 101.58492 * 322.98685 * 19 18 17 23 23 C 1.47025 * 125.65175 * 173.88768 * 17 15 14 24 24 H 1.09002 * 109.88501 * 59.48019 * 23 17 15 25 25 C 1.53005 * 109.87745 * 298.31972 * 23 17 15 26 26 O 1.42901 * 109.47218 * 67.19227 * 25 23 17 27 27 C 1.38834 * 120.02011 * 91.89812 * 10 9 7 28 28 H 0.96999 * 120.00170 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.89994 * 359.96786 * 11 10 9 30 30 H 1.07999 * 119.87440 * 179.97438 * 12 11 10 31 31 H 1.08001 * 119.97682 * 180.02562 * 13 12 11 32 32 H 1.09000 * 110.36259 * 323.00497 * 18 17 15 33 33 H 1.08995 * 110.36421 * 85.32688 * 18 17 15 34 34 H 0.96700 * 113.99584 * 292.19138 * 21 19 18 35 35 H 1.09005 * 110.71937 * 277.14690 * 22 19 18 36 36 H 1.08989 * 110.72355 * 153.86630 * 22 19 18 37 37 H 1.09007 * 109.47110 * 187.18943 * 25 23 17 38 38 H 1.09002 * 109.47195 * 307.18727 * 25 23 17 39 39 H 0.96702 * 113.99880 * 179.97438 * 26 25 23 40 40 H 1.07999 * 120.12303 * 0.05253 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0099 -1.2014 -0.0005 8 1 3.0899 -1.2014 -0.0010 9 16 1.1290 -2.7273 -0.0005 10 6 2.4710 -3.8555 -0.1762 11 6 2.9188 -4.2131 -1.4450 12 6 3.9710 -5.0969 -1.5870 13 6 4.5860 -5.6310 -0.4720 14 6 4.1457 -5.2784 0.8053 15 6 4.8037 -5.8492 2.0002 16 8 4.5391 -5.4161 3.1047 17 7 5.6967 -6.8494 1.8646 18 6 6.0151 -7.5527 0.6086 19 6 6.5623 -8.9317 1.0541 20 1 5.7487 -9.6164 1.2932 21 8 7.4211 -9.4884 0.0567 22 6 7.3626 -8.5525 2.3282 23 6 6.5142 -7.4205 2.9449 24 1 5.8684 -7.8241 3.7249 25 6 7.4301 -6.3432 3.5295 26 8 6.6402 -5.3588 4.1997 27 6 3.0798 -4.3916 0.9505 28 1 -0.4850 0.8400 0.0004 29 1 2.4420 -3.7985 -2.3209 30 1 4.3138 -5.3710 -2.5737 31 1 5.4085 -6.3212 -0.5880 32 1 5.1157 -7.6783 0.0058 33 1 6.7742 -7.0058 0.0496 34 1 6.9655 -9.7408 -0.7580 35 1 8.3566 -8.1903 2.0657 36 1 7.4276 -9.4007 3.0095 37 1 8.1208 -6.7993 4.2388 38 1 7.9943 -5.8706 2.7255 39 1 7.1564 -4.6435 4.5959 40 1 2.7319 -4.1191 1.9360 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330715455.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:24 Heat of formation + Delta-G solvation = -79.583271 kcal Electronic energy + Delta-G solvation = -24851.727225 eV Core-core repulsion = 21144.675668 eV Total energy + Delta-G solvation = -3707.051558 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.69377 -38.61930 -37.54946 -36.68616 -35.55165 -32.48886 -32.32705 -30.59044 -30.09673 -29.57233 -25.87315 -25.54265 -23.99053 -22.56906 -21.99035 -21.12981 -19.56015 -18.03063 -17.99538 -17.32420 -16.91537 -16.75467 -15.96754 -15.49138 -14.98042 -14.83242 -14.51423 -14.40647 -14.16095 -13.85771 -13.83951 -13.44496 -13.16206 -12.98259 -12.85805 -12.33125 -12.23385 -11.92024 -11.68309 -11.47722 -11.16249 -11.10059 -11.04521 -11.01308 -10.72352 -10.37128 -10.03298 -9.91399 -9.57095 -9.14418 -8.95485 -8.73280 -8.51481 -7.98709 -6.68978 -6.26741 -4.00374 1.24668 1.69683 2.75679 3.11501 3.21410 3.24881 3.29357 3.47862 3.59738 4.02141 4.07044 4.15299 4.28196 4.31200 4.55892 4.79259 4.80176 5.02202 5.06339 5.09250 5.15360 5.16736 5.23690 5.28947 5.31366 5.39241 5.46734 5.50208 5.74319 5.81045 5.91083 5.98116 6.25927 6.30452 6.63042 6.68478 6.97107 7.12134 7.24396 7.51121 7.59622 7.66064 8.34947 8.41733 9.19091 10.80064 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.018169 B = 0.003274 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.702240 B = 8549.673527 C = 9375.099084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.073 3.927 3 Si 0.921 3.079 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.518 4.518 8 H 0.075 0.925 9 S -0.037 6.037 10 C -0.106 4.106 11 C -0.057 4.057 12 C -0.143 4.143 13 C -0.122 4.122 14 C -0.148 4.148 15 C 0.574 3.426 16 O -0.491 6.491 17 N -0.615 5.615 18 C 0.059 3.941 19 C 0.089 3.911 20 H 0.079 0.921 21 O -0.556 6.556 22 C -0.118 4.118 23 C 0.142 3.858 24 H 0.086 0.914 25 C 0.065 3.935 26 O -0.538 6.538 27 C -0.021 4.021 28 H 0.269 0.731 29 H 0.130 0.870 30 H 0.122 0.878 31 H 0.142 0.858 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.384 0.616 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.370 0.630 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.882 -18.754 0.128 24.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.136 4.136 3 Si 0.747 3.253 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.666 4.666 8 H 0.093 0.907 9 S 0.198 5.802 10 C -0.217 4.217 11 C -0.078 4.078 12 C -0.163 4.163 13 C -0.140 4.140 14 C -0.153 4.153 15 C 0.364 3.636 16 O -0.363 6.363 17 N -0.353 5.353 18 C -0.064 4.064 19 C 0.029 3.971 20 H 0.097 0.903 21 O -0.361 6.361 22 C -0.155 4.155 23 C 0.038 3.962 24 H 0.104 0.896 25 C -0.014 4.014 26 O -0.342 6.342 27 C -0.042 4.042 28 H 0.079 0.921 29 H 0.148 0.852 30 H 0.140 0.860 31 H 0.159 0.841 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.232 0.768 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.216 0.784 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 14.271 -18.754 1.129 23.593 hybrid contribution 2.012 1.511 -0.543 2.574 sum 16.283 -17.243 0.586 23.723 Atomic orbital electron populations 1.69990 1.05887 1.27624 1.47139 1.24996 0.95121 0.99075 0.94386 0.86122 0.79565 0.81253 0.78401 1.20198 1.20653 1.19545 1.22832 0.94879 0.90190 1.58681 0.90672 1.83578 1.04376 0.97217 1.95075 1.22824 1.02937 1.01966 0.93958 1.21995 0.94232 0.94044 0.97510 1.21098 0.97799 0.99261 0.98130 1.22224 1.00180 0.99674 0.91953 1.19841 1.00221 1.02672 0.92557 1.18088 0.78111 0.78249 0.89164 1.90846 1.60293 1.58725 1.26466 1.48180 1.41561 1.36766 1.08782 1.23498 1.01339 0.93098 0.88482 1.22995 0.92456 0.92900 0.88762 0.90332 1.86510 1.37815 1.83299 1.28452 1.22600 0.99531 0.97624 0.95791 1.21513 0.92008 0.92061 0.90593 0.89606 1.22524 0.92864 0.90510 0.95520 1.86925 1.35440 1.37506 1.74300 1.21898 0.91355 0.91388 0.99599 0.92090 0.85219 0.86045 0.84062 0.88751 0.90139 0.76796 0.89254 0.89046 0.93114 0.93763 0.78429 0.84437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.70 13.22 55.49 0.73 -24.97 16 2 C 0.07 2.07 5.49 -17.46 -0.10 1.98 16 3 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.88 9.46 30.91 0.29 -14.59 16 8 H 0.08 2.15 7.79 -52.49 -0.41 1.74 16 9 S -0.04 -0.97 21.41 -107.50 -2.30 -3.27 16 10 C -0.11 -2.33 5.45 -39.00 -0.21 -2.54 16 11 C -0.06 -1.06 9.79 -39.25 -0.38 -1.44 16 12 C -0.14 -2.12 10.02 -39.67 -0.40 -2.52 16 13 C -0.12 -1.75 8.29 -39.12 -0.32 -2.07 16 14 C -0.15 -2.61 5.85 -105.00 -0.61 -3.22 16 15 C 0.57 9.86 7.43 -12.33 -0.09 9.77 16 16 O -0.49 -10.17 14.01 -18.17 -0.25 -10.43 16 17 N -0.61 -7.76 3.06 -164.11 -0.50 -8.26 16 18 C 0.06 0.52 4.63 -2.53 -0.01 0.51 16 19 C 0.09 0.61 4.43 -24.58 -0.11 0.50 16 20 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 21 O -0.56 -3.54 13.47 -35.23 -0.47 -4.01 16 22 C -0.12 -0.85 6.21 -24.90 -0.15 -1.00 16 23 C 0.14 1.49 3.26 -66.95 -0.22 1.28 16 24 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 25 C 0.07 0.68 6.46 37.16 0.24 0.92 16 26 O -0.54 -7.49 10.59 -58.72 -0.62 -8.11 16 27 C -0.02 -0.44 9.34 -38.92 -0.36 -0.80 16 28 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.13 2.33 8.06 -52.49 -0.42 1.91 16 30 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.14 1.50 3.34 -52.49 -0.18 1.33 16 32 H 0.09 0.78 6.01 -51.93 -0.31 0.47 16 33 H 0.08 0.68 7.32 -51.93 -0.38 0.30 16 34 H 0.38 0.87 9.12 45.56 0.42 1.28 16 35 H 0.09 0.63 7.85 -51.93 -0.41 0.22 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 38 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.37 3.62 9.12 45.56 0.42 4.04 16 40 H 0.14 3.09 7.68 -52.49 -0.40 2.68 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -36.59 346.12 -9.02 -45.61 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -3.35 Total: 4.77 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -2.44 Total: -13.22 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.23 Total: -33.23 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -1.35 Total: -22.55 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -0.97 SS G_CDS: -2.30 Total: -3.27 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.59 -9.02 -45.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330715455.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.974 kcal (2) G-P(sol) polarization free energy of solvation -36.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds