Wall clock time and date at job start Fri Apr 10 2020 14:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34237 * 116.99775 * 2 1 4 4 O 1.20819 * 119.99887 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99957 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47178 * 179.97438 * 5 3 2 7 7 C 1.35166 * 120.00151 * 263.32404 * 6 5 3 8 8 H 1.07999 * 119.99846 * 132.31347 * 7 6 5 9 9 C 1.39978 * 120.00316 * 312.31222 * 7 6 5 10 10 N 1.30782 * 119.99498 * 349.62208 * 9 7 6 11 11 Si 1.86793 * 120.00435 * 169.61715 * 9 7 6 12 12 H 1.48507 * 109.46999 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47184 * 119.99970 * 11 9 7 14 14 H 1.48501 * 109.47356 * 240.00188 * 11 9 7 15 15 C 1.34775 * 119.99782 * 83.32093 * 6 5 3 16 16 O 1.21574 * 120.00340 * 4.82919 * 15 6 5 17 17 C 1.48404 * 120.00160 * 184.82963 * 15 6 5 18 18 O 1.21528 * 119.99690 * 3.91133 * 17 15 6 19 19 C 1.47467 * 119.99928 * 183.91988 * 17 15 6 20 20 C 1.39858 * 120.15795 * 353.62531 * 19 17 15 21 21 C 1.38081 * 119.80103 * 180.02562 * 20 19 17 22 22 F 1.35093 * 119.94364 * 180.02562 * 21 20 19 23 23 C 1.38680 * 120.11321 * 359.97438 * 21 20 19 24 24 C 1.38378 * 120.32439 * 0.30155 * 23 21 20 25 25 C 1.37896 * 120.19568 * 359.44525 * 24 23 21 26 26 C 1.50694 * 120.06307 * 180.25511 * 25 24 23 27 27 H 1.09003 * 109.47308 * 60.00586 * 1 2 3 28 28 H 1.09001 * 109.46503 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47140 * 299.99649 * 1 2 3 30 30 H 1.09007 * 109.47533 * 59.99971 * 5 3 2 31 31 H 1.08997 * 109.47374 * 299.99590 * 5 3 2 32 32 H 0.97005 * 119.99547 * 179.97438 * 10 9 7 33 33 H 1.07995 * 120.10332 * 0.05598 * 20 19 17 34 34 H 1.08008 * 119.83420 * 180.02562 * 23 21 20 35 35 H 1.07994 * 119.90233 * 179.72216 * 24 23 21 36 36 H 1.09002 * 109.47399 * 262.60030 * 26 25 24 37 37 H 1.08998 * 109.47056 * 22.60396 * 26 25 24 38 38 H 1.09002 * 109.47370 * 142.59949 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 7 3.9816 2.6799 -0.0011 7 6 4.3033 3.2892 -1.1640 8 1 3.8926 4.2607 -1.3962 9 6 5.1687 2.6610 -2.0673 10 7 5.8239 1.5882 -1.7066 11 14 5.3875 3.3550 -3.7876 12 1 4.5411 4.5651 -3.9446 13 1 6.8122 3.7174 -3.9977 14 1 4.9836 2.3346 -4.7881 15 6 4.0429 3.3649 1.1580 16 8 3.8390 2.7950 2.2124 17 6 4.3592 4.8148 1.1473 18 8 4.4928 5.3997 0.0905 19 6 4.5115 5.5456 2.4191 20 6 4.2288 4.9105 3.6326 21 6 4.3735 5.6019 4.8191 22 9 4.1017 4.9911 5.9930 23 6 4.7983 6.9220 4.8077 24 6 5.0739 7.5570 3.6095 25 6 4.9389 6.8773 2.4173 26 6 5.2453 7.5699 1.1145 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.9557 0.7811 -0.8909 31 1 3.9564 0.7808 0.8891 32 1 6.4234 1.1527 -2.3327 33 1 3.8989 3.8822 3.6419 34 1 4.9103 7.4585 5.7384 35 1 5.3999 8.5865 3.6083 36 1 4.3190 7.9331 0.6693 37 1 5.9140 8.4108 1.2986 38 1 5.7247 6.8670 0.4332 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358967712.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:46 Heat of formation + Delta-G solvation = -160.972297 kcal Electronic energy + Delta-G solvation = -27684.487086 eV Core-core repulsion = 23407.693059 eV Total energy + Delta-G solvation = -4276.794027 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.105 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.88416 -41.98210 -41.28885 -39.87749 -38.80501 -37.60688 -36.90145 -33.84838 -33.31961 -32.40965 -30.69453 -28.36965 -27.94956 -27.10328 -25.68224 -24.05487 -22.66444 -21.94197 -21.14984 -19.74750 -18.81808 -18.30876 -18.15391 -17.51973 -17.41810 -17.02161 -16.91193 -16.70381 -16.58376 -16.15158 -16.07242 -15.57187 -15.17972 -14.93322 -14.75325 -14.47965 -14.34691 -14.31655 -13.73523 -13.62393 -13.38822 -13.11847 -12.97394 -12.84434 -12.78095 -12.70102 -12.67007 -12.49077 -12.11529 -11.83057 -11.72019 -11.46272 -11.17661 -10.12685 -10.07322 -9.57215 -9.54247 -8.51024 -6.29334 -0.61995 0.16337 0.66316 1.16040 1.38537 1.43399 1.55682 1.64138 2.11250 2.29447 2.39579 2.68949 2.95725 3.19724 3.52271 3.74640 3.88052 3.96115 4.03090 4.14641 4.25077 4.29386 4.29575 4.37149 4.62900 4.67627 4.70042 4.78930 4.83912 5.01822 5.04174 5.13308 5.24939 5.26676 5.40296 5.52611 5.72169 5.86640 6.09546 6.46856 6.72731 6.87699 7.16750 7.64050 8.52622 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.011040 B = 0.005217 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.642109 B = 5365.712574 C = 7219.212212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.454 3.546 4 O -0.534 6.534 5 C 0.119 3.881 6 N -0.383 5.383 7 C -0.356 4.356 8 H 0.103 0.897 9 C 0.016 3.984 10 N -0.874 5.874 11 Si 0.986 3.014 12 H -0.266 1.266 13 H -0.270 1.270 14 H -0.265 1.265 15 C 0.419 3.581 16 O -0.597 6.597 17 C 0.377 3.623 18 O -0.409 6.409 19 C -0.151 4.151 20 C -0.121 4.121 21 C 0.055 3.945 22 F -0.146 7.146 23 C -0.103 4.103 24 C -0.100 4.100 25 C -0.040 4.040 26 C -0.118 4.118 27 H 0.059 0.941 28 H 0.141 0.859 29 H 0.056 0.944 30 H 0.137 0.863 31 H 0.107 0.893 32 H 0.285 0.715 33 H 0.156 0.844 34 H 0.176 0.824 35 H 0.184 0.816 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.739 6.277 5.227 8.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.297 3.703 4 O -0.423 6.423 5 C -0.006 4.006 6 N -0.101 5.101 7 C -0.485 4.485 8 H 0.120 0.880 9 C -0.191 4.191 10 N -0.509 5.509 11 Si 0.808 3.192 12 H -0.190 1.190 13 H -0.195 1.195 14 H -0.190 1.190 15 C 0.210 3.790 16 O -0.486 6.486 17 C 0.252 3.748 18 O -0.282 6.282 19 C -0.153 4.153 20 C -0.140 4.140 21 C 0.036 3.964 22 F -0.124 7.124 23 C -0.122 4.122 24 C -0.117 4.117 25 C -0.041 4.041 26 C -0.174 4.174 27 H 0.078 0.922 28 H 0.159 0.841 29 H 0.075 0.925 30 H 0.155 0.845 31 H 0.125 0.875 32 H 0.096 0.904 33 H 0.173 0.827 34 H 0.194 0.806 35 H 0.201 0.799 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.883 6.410 5.110 8.411 hybrid contribution -0.309 -0.552 -0.554 0.841 sum -2.192 5.859 4.557 7.739 Atomic orbital electron populations 1.23561 0.74908 1.05861 1.02189 1.86503 1.25093 1.32269 1.84006 1.24765 0.92999 0.81506 0.71007 1.90576 1.67557 1.37584 1.46600 1.21064 0.85471 0.87072 1.06980 1.42775 1.52152 1.08974 1.06200 1.20081 1.27400 1.05485 0.95487 0.87955 1.26536 0.92951 0.95865 1.03782 1.69611 1.24115 1.19602 1.37613 0.84985 0.78610 0.78909 0.76687 1.19031 1.19541 1.19020 1.21029 0.83383 0.90585 0.84036 1.90371 1.56937 1.70859 1.30395 1.22037 0.75431 0.88251 0.89075 1.90495 1.34536 1.69454 1.33734 1.19908 1.07100 0.95744 0.92513 1.22505 0.97520 1.02993 0.90962 1.17824 1.04889 0.93136 0.80543 1.91465 1.91964 1.83649 1.45366 1.21783 0.97136 0.91692 1.01551 1.21280 0.99729 1.01722 0.89008 1.20564 0.94044 0.91172 0.98327 1.21061 1.02819 1.00614 0.92898 0.92182 0.84149 0.92532 0.84521 0.87550 0.90435 0.82654 0.80643 0.79919 0.90510 0.88336 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.96 16 2 O -0.36 -13.41 10.57 -51.48 -0.54 -13.95 16 3 C 0.45 20.51 7.98 71.23 0.57 21.08 16 4 O -0.53 -26.94 16.01 21.98 0.35 -26.59 16 5 C 0.12 5.64 5.42 85.63 0.46 6.11 16 6 N -0.38 -20.10 1.97 -642.84 -1.27 -21.37 16 7 C -0.36 -18.82 7.74 84.60 0.65 -18.17 16 8 H 0.10 5.63 5.95 -2.91 -0.02 5.61 16 9 C 0.02 0.77 5.08 85.27 0.43 1.20 16 10 N -0.87 -43.77 11.63 21.83 0.25 -43.52 16 11 Si 0.99 39.52 29.57 68.60 2.03 41.55 16 12 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 13 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 14 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 15 C 0.42 21.79 7.36 86.95 0.64 22.43 16 16 O -0.60 -31.38 13.07 -3.95 -0.05 -31.43 16 17 C 0.38 17.63 6.98 27.42 0.19 17.82 16 18 O -0.41 -19.36 10.49 -3.80 -0.04 -19.40 16 19 C -0.15 -5.90 5.88 -20.06 -0.12 -6.02 16 20 C -0.12 -4.69 9.27 22.62 0.21 -4.48 16 21 C 0.06 1.73 7.29 22.34 0.16 1.89 16 22 F -0.15 -4.63 17.26 44.97 0.78 -3.85 16 23 C -0.10 -2.33 10.02 22.41 0.22 -2.11 16 24 C -0.10 -2.16 9.66 22.22 0.21 -1.94 16 25 C -0.04 -1.22 5.92 -19.55 -0.12 -1.33 16 26 C -0.12 -3.22 8.68 71.23 0.62 -2.60 16 27 H 0.06 1.63 8.13 -2.39 -0.02 1.61 16 28 H 0.14 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.06 1.57 8.13 -2.39 -0.02 1.55 16 30 H 0.14 6.53 6.01 -2.38 -0.01 6.52 16 31 H 0.11 4.95 7.57 -2.39 -0.02 4.93 16 32 H 0.29 13.12 8.29 -92.70 -0.77 12.35 16 33 H 0.16 6.94 4.85 -3.77 -0.02 6.93 16 34 H 0.18 2.53 8.06 -2.91 -0.02 2.50 16 35 H 0.18 2.24 8.05 -2.91 -0.02 2.21 16 36 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.10 1.86 8.03 -2.39 -0.02 1.84 16 38 H 0.07 2.24 5.95 -2.39 -0.01 2.23 16 Total: -1.00 -67.07 335.04 7.98 -59.09 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 1.13 Total: 23.63 kcal Atomic # 6 Polarization: 30.51 SS G_CDS: 5.35 Total: 35.85 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -1.01 Total: -64.89 kcal Atomic # 8 Polarization: -91.09 SS G_CDS: -0.28 Total: -91.38 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.78 Total: -3.85 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -67.07 7.98 -59.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358967712.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.883 kcal (2) G-P(sol) polarization free energy of solvation -67.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds