Wall clock time and date at job start Fri Apr 10 2020 14:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47202 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.47204 * 179.97438 * 12.92284 * 3 2 1 5 5 C 1.52997 * 109.46781 * 208.60596 * 4 3 2 6 6 H 1.09000 * 109.47418 * 55.00210 * 5 4 3 7 7 C 1.52994 * 109.47143 * 175.00111 * 5 4 3 8 8 O 1.42898 * 109.47091 * 54.99907 * 7 5 4 9 9 N 1.46499 * 109.47316 * 295.00194 * 5 4 3 10 10 S 1.65605 * 120.00192 * 143.87786 * 9 5 4 11 11 O 1.42097 * 106.40108 * 311.82914 * 10 9 5 12 12 O 1.42097 * 106.40293 * 178.90369 * 10 9 5 13 13 C 1.76206 * 107.21313 * 65.36655 * 10 9 5 14 14 C 1.37644 * 120.12658 * 244.33747 * 13 10 9 15 15 C 1.38613 * 120.24385 * 180.32189 * 14 13 10 16 16 C 1.38646 * 120.50547 * 359.67696 * 15 14 13 17 17 C 1.37603 * 120.24926 * 359.97438 * 16 15 14 18 18 C 1.40697 * 120.12947 * 64.04196 * 13 10 9 19 19 C 1.41389 * 120.24245 * 359.97321 * 18 13 10 20 20 H 1.08009 * 120.00371 * 335.74064 * 19 18 13 21 21 C 1.39945 * 120.00212 * 155.74019 * 19 18 13 22 22 N 1.30823 * 120.00170 * 332.06664 * 21 19 18 23 23 Si 1.86803 * 120.00117 * 152.05718 * 21 19 18 24 24 H 1.48490 * 109.47460 * 270.00330 * 23 21 19 25 25 H 1.48504 * 109.46960 * 30.00651 * 23 21 19 26 26 H 1.48506 * 109.46926 * 150.00255 * 23 21 19 27 27 H 1.08993 * 109.47561 * 318.46942 * 1 2 3 28 28 H 1.09000 * 109.47102 * 78.47171 * 1 2 3 29 29 H 1.09003 * 109.46626 * 198.46676 * 1 2 3 30 30 H 1.09000 * 109.47076 * 88.60736 * 4 3 2 31 31 H 1.08999 * 109.46966 * 328.60458 * 4 3 2 32 32 H 1.08997 * 109.47730 * 175.00083 * 7 5 4 33 33 H 1.09000 * 109.47428 * 295.00049 * 7 5 4 34 34 H 0.96701 * 114.00194 * 179.97438 * 8 7 5 35 35 H 0.97002 * 120.00092 * 323.87860 * 9 5 4 36 36 H 1.08002 * 119.87827 * 0.02562 * 14 13 10 37 37 H 1.08008 * 119.74284 * 179.69609 * 15 14 13 38 38 H 1.07998 * 119.88006 * 180.02562 * 16 15 14 39 39 H 1.08000 * 120.12795 * 180.02562 * 17 16 15 40 40 H 0.97005 * 119.99401 * 355.87543 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1181 0.0005 -0.0001 5 6 4.6280 1.2670 0.6904 6 1 4.1935 1.3372 1.6876 7 6 6.1528 1.2085 0.8016 8 8 6.7172 0.9996 -0.4945 9 7 4.2403 2.4413 -0.0949 10 16 3.8167 3.8470 0.6715 11 8 2.8889 3.4871 1.6858 12 8 3.5238 4.7890 -0.3512 13 6 5.2534 4.4426 1.4999 14 6 5.2758 4.5213 2.8739 15 6 6.4022 4.9957 3.5277 16 6 7.5200 5.3896 2.8082 17 6 7.5225 5.3128 1.4343 18 6 6.3842 4.8336 0.7597 19 6 6.3751 4.7507 -0.6517 20 1 5.7122 4.0571 -1.1477 21 6 7.2250 5.5674 -1.4061 22 7 7.6043 6.7278 -0.9361 23 14 7.8181 5.0004 -3.0843 24 1 9.0872 4.2448 -2.9316 25 1 6.7911 4.1235 -3.7020 26 1 8.0473 6.1825 -3.9536 27 1 -0.3634 0.7692 0.6813 28 1 -0.3633 0.2054 -1.0069 29 1 -0.3633 -0.9748 0.3255 30 1 4.4813 -0.0244 -1.0275 31 1 4.4814 -0.8767 0.5352 32 1 6.5235 2.1476 1.2122 33 1 6.4380 0.3870 1.4587 34 1 7.6830 0.9524 -0.5000 35 1 4.2317 2.3956 -1.0638 36 1 4.4108 4.2168 3.4444 37 1 6.4092 5.0587 4.6059 38 1 8.3923 5.7573 3.3280 39 1 8.3945 5.6198 0.8759 40 1 7.2496 7.0486 -0.0921 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601453795.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:08 Heat of formation + Delta-G solvation = -75.713266 kcal Electronic energy + Delta-G solvation = -26161.406766 eV Core-core repulsion = 22454.523024 eV Total energy + Delta-G solvation = -3706.883742 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.00071 -37.65091 -36.23019 -35.10321 -34.85018 -34.14769 -33.51017 -30.51191 -30.17704 -29.48212 -28.05951 -25.56791 -25.37027 -21.82274 -21.32839 -21.03226 -18.87296 -18.34476 -17.43515 -16.75557 -16.51866 -16.08189 -15.43600 -14.96123 -14.69126 -14.32808 -14.13023 -13.96496 -13.75261 -13.62306 -13.40989 -13.33612 -12.98944 -12.91005 -12.53543 -12.20850 -11.81544 -11.67706 -11.40901 -11.24123 -11.17063 -11.15530 -11.04172 -10.91817 -10.55809 -10.49765 -9.88092 -9.85802 -9.56147 -9.50307 -9.42160 -9.23256 -8.78407 -8.21913 -7.87090 -7.53981 -4.84911 1.51623 2.22407 2.63820 2.90835 2.93946 3.06429 3.16810 3.27114 3.84456 3.88476 4.28995 4.39754 4.53393 4.72469 5.08740 5.13260 5.31921 5.41632 5.53062 5.59771 5.61881 5.65664 5.71066 5.75771 5.91037 5.99229 6.04145 6.06161 6.21050 6.29099 6.47517 6.64845 6.88986 7.09566 7.27409 7.37289 7.49008 7.61694 7.66265 7.79304 7.88303 7.93210 7.96890 8.34076 8.54783 9.71213 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.012400 B = 0.005853 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.542391 B = 4782.356616 C = 5504.767034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.200 4.200 3 C -0.178 4.178 4 C -0.004 4.004 5 C 0.168 3.832 6 H 0.100 0.900 7 C 0.056 3.944 8 O -0.561 6.561 9 N -1.107 6.107 10 S 2.699 3.301 11 O -0.998 6.998 12 O -0.968 6.968 13 C -0.787 4.787 14 C 0.015 3.985 15 C -0.270 4.270 16 C -0.054 4.054 17 C -0.216 4.216 18 C 0.162 3.838 19 C -0.483 4.483 20 H 0.092 0.908 21 C 0.043 3.957 22 N -0.766 5.766 23 Si 1.068 2.932 24 H -0.271 1.271 25 H -0.268 1.268 26 H -0.274 1.274 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.376 0.624 35 H 0.415 0.585 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.669 -11.454 0.560 11.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.200 4.200 3 C -0.178 4.178 4 C -0.042 4.042 5 C 0.059 3.941 6 H 0.118 0.882 7 C -0.024 4.024 8 O -0.366 6.366 9 N -0.863 5.863 10 S 2.797 3.203 11 O -0.989 6.989 12 O -0.958 6.958 13 C -0.882 4.882 14 C -0.005 4.005 15 C -0.291 4.291 16 C -0.073 4.073 17 C -0.236 4.236 18 C 0.157 3.843 19 C -0.509 4.509 20 H 0.110 0.890 21 C -0.183 4.183 22 N -0.386 5.386 23 Si 0.890 3.110 24 H -0.197 1.197 25 H -0.193 1.193 26 H -0.199 1.199 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.223 0.777 35 H 0.249 0.751 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.127 0.873 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.222 -10.577 -0.700 10.831 hybrid contribution 0.489 -0.281 1.566 1.665 sum -1.733 -10.859 0.866 11.030 Atomic orbital electron populations 1.18816 0.85051 1.02670 1.02881 1.22316 0.93898 1.01751 1.02035 1.22268 0.93566 1.00930 1.01009 1.18870 0.84317 0.97635 1.03367 1.20691 0.92501 0.85316 0.95578 0.88171 1.22795 0.93602 1.00831 0.85150 1.86414 1.25058 1.95925 1.29192 1.55586 1.86262 1.26595 1.17824 1.01091 0.74150 0.72099 0.73000 1.93448 1.61422 1.83833 1.60156 1.93537 1.84660 1.59691 1.57932 1.29763 1.19329 1.35063 1.04016 1.20314 0.96167 0.91618 0.92427 1.20397 0.96160 1.14931 0.97582 1.20801 0.96423 0.95726 0.94373 1.21304 0.98769 1.09891 0.93655 1.16918 0.88675 0.86400 0.92287 1.20993 1.19225 1.19311 0.91399 0.89044 1.27197 0.92380 0.92583 1.06145 1.70450 1.33108 1.14710 1.20341 0.83585 0.77499 0.76960 0.72906 1.19676 1.19290 1.19911 0.90125 0.90507 0.90635 0.88178 0.88942 0.91251 0.93519 0.77730 0.75147 0.87455 0.88697 0.88804 0.87261 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.42 10.32 34.37 0.35 -0.07 16 2 C -0.20 -3.03 14.13 -37.12 -0.52 -3.55 16 3 C -0.18 -2.75 13.06 -37.12 -0.48 -3.23 16 4 C 0.00 -0.05 5.04 -29.52 -0.15 -0.20 16 5 C 0.17 2.59 2.68 -67.94 -0.18 2.41 16 6 H 0.10 1.59 7.48 -51.93 -0.39 1.20 16 7 C 0.06 0.80 6.88 37.15 0.26 1.06 16 8 O -0.56 -7.74 12.83 -35.23 -0.45 -8.20 16 9 N -1.11 -20.23 4.23 -4.90 -0.02 -20.25 16 10 S 2.70 60.07 4.93 -107.50 -0.53 59.54 16 11 O -1.00 -23.15 16.30 -57.17 -0.93 -24.08 16 12 O -0.97 -24.75 16.57 -57.17 -0.95 -25.69 16 13 C -0.79 -18.22 4.95 -38.87 -0.19 -18.41 16 14 C 0.01 0.32 9.53 -39.66 -0.38 -0.06 16 15 C -0.27 -5.67 10.05 -39.29 -0.39 -6.07 16 16 C -0.05 -1.16 10.02 -39.66 -0.40 -1.55 16 17 C -0.22 -5.04 7.99 -38.87 -0.31 -5.35 16 18 C 0.16 3.92 4.77 -106.83 -0.51 3.41 16 19 C -0.48 -11.73 7.70 -37.74 -0.29 -12.02 16 20 H 0.09 2.16 5.59 -52.48 -0.29 1.86 16 21 C 0.04 1.02 4.89 -17.34 -0.08 0.93 16 22 N -0.77 -19.05 12.35 55.55 0.69 -18.36 16 23 Si 1.07 20.35 30.01 -169.99 -5.10 15.25 16 24 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 25 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 26 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.10 1.30 7.73 -51.93 -0.40 0.90 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.18 6.51 -51.93 -0.34 0.84 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.38 3.90 9.12 45.56 0.42 4.32 16 35 H 0.41 7.22 8.54 -34.47 -0.29 6.93 16 36 H 0.11 2.21 7.33 -52.49 -0.38 1.82 16 37 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 38 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.11 2.58 6.48 -52.49 -0.34 2.24 16 40 H 0.30 7.84 6.75 -40.82 -0.28 7.56 16 LS Contribution 352.88 15.07 5.32 5.32 Total: -1.00 -31.65 352.88 -9.32 -40.97 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -4.06 Total: 18.21 kcal Atomic # 6 Polarization: -39.42 SS G_CDS: -3.29 Total: -42.70 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.67 Total: -38.61 kcal Atomic # 8 Polarization: -55.64 SS G_CDS: -2.33 Total: -57.97 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.10 Total: 15.25 kcal Atomic # 16 Polarization: 60.07 SS G_CDS: -0.53 Total: 59.54 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.65 -9.32 -40.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601453795.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.745 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds