Wall clock time and date at job start Fri Apr 10 2020 14:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86796 * 120.00130 * 2 1 4 4 H 1.48496 * 109.47159 * 239.99222 * 3 2 1 5 5 H 1.48496 * 109.47284 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46932 * 119.99427 * 3 2 1 7 7 C 1.39948 * 119.99580 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99838 * 197.84738 * 7 2 1 9 9 C 1.41394 * 120.00271 * 17.85003 * 7 2 1 10 10 C 1.40733 * 120.24458 * 24.39128 * 9 7 2 11 11 C 1.37595 * 119.74654 * 179.97438 * 10 9 7 12 12 C 1.38657 * 120.24825 * 359.74867 * 11 10 9 13 13 C 1.38620 * 120.49774 * 0.51661 * 12 11 10 14 14 S 1.76198 * 119.87346 * 179.76307 * 13 12 11 15 15 O 1.42101 * 106.40266 * 156.17903 * 14 13 12 16 16 O 1.42103 * 106.40298 * 23.26098 * 14 13 12 17 17 N 1.65602 * 107.21632 * 269.72173 * 14 13 12 18 18 C 1.46500 * 120.00111 * 65.00250 * 17 14 13 19 19 H 1.09001 * 110.34759 * 22.71073 * 18 17 14 20 20 C 1.51105 * 110.38706 * 260.30171 * 18 17 14 21 21 C 1.30526 * 111.10610 * 257.62993 * 20 18 17 22 22 C 1.51100 * 111.09940 * 359.97438 * 21 20 18 23 23 H 1.09007 * 110.38298 * 224.75446 * 22 21 20 24 24 C 1.53000 * 110.48423 * 102.43244 * 22 21 20 25 25 O 1.42897 * 109.47309 * 69.63146 * 24 22 21 26 26 C 1.54634 * 104.73130 * 343.56332 * 22 21 20 27 27 C 1.37637 * 120.24652 * 359.48069 * 13 12 11 28 28 H 0.97001 * 119.99910 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.12612 * 0.02562 * 10 9 7 30 30 H 1.07996 * 119.87501 * 180.02562 * 11 10 9 31 31 H 1.07995 * 119.75037 * 180.25553 * 12 11 10 32 32 H 0.97002 * 119.99722 * 244.72526 * 17 14 13 33 33 H 1.08007 * 124.44533 * 77.59832 * 20 18 17 34 34 H 1.07996 * 124.44523 * 180.02562 * 21 20 18 35 35 H 1.09003 * 109.47158 * 189.63982 * 24 22 21 36 36 H 1.08999 * 109.46939 * 309.63337 * 24 22 21 37 37 H 0.96702 * 114.00044 * 179.97438 * 25 24 22 38 38 H 1.09000 * 111.04511 * 266.60682 * 26 22 21 39 39 H 1.09001 * 111.03848 * 142.66443 * 26 22 21 40 40 H 1.08003 * 120.12088 * 180.28115 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2773 2.7464 0.0006 6 1 3.0959 1.6963 1.2126 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2345 0.2872 9 6 1.3519 -2.4072 -0.3743 10 6 0.2205 -2.3628 -1.2101 11 6 -0.4096 -3.5322 -1.5688 12 6 0.0693 -4.7515 -1.1143 13 6 1.1796 -4.8068 -0.2863 14 16 1.7704 -6.3648 0.2867 15 8 3.1438 -6.1818 0.6022 16 8 1.3092 -7.3354 -0.6430 17 7 1.0005 -6.6849 1.7175 18 6 -0.4495 -6.8930 1.7385 19 1 -0.8026 -7.2003 0.7541 20 6 -1.1557 -5.6336 2.1841 21 6 -1.5371 -5.7240 3.4291 22 6 -1.1495 -7.0590 4.0212 23 1 -1.9802 -7.4780 4.5893 24 6 0.0842 -6.9109 4.9138 25 8 -0.2649 -6.1813 6.0918 26 6 -0.8273 -7.9519 2.8005 27 6 1.8257 -3.6497 0.0853 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1512 -1.4145 -1.5692 30 1 -1.2777 -3.5005 -2.2105 31 1 -0.4290 -5.6647 -1.4043 32 1 1.5101 -6.7385 2.5411 33 1 -1.3224 -4.7716 1.5551 34 1 -2.0617 -4.9470 3.9652 35 1 0.4512 -7.8985 5.1933 36 1 0.8627 -6.3743 4.3715 37 1 0.4708 -6.0496 6.7055 38 1 -1.7030 -8.5222 2.4906 39 1 0.0138 -8.6127 3.0102 40 1 2.6933 -3.6955 0.7269 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619488822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:39 Heat of formation + Delta-G solvation = -112.914445 kcal Electronic energy + Delta-G solvation = -25447.013627 eV Core-core repulsion = 21738.516721 eV Total energy + Delta-G solvation = -3708.496906 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.53014 -39.43576 -38.25898 -37.28750 -36.91503 -35.67099 -34.34959 -31.91243 -31.58940 -30.69682 -28.68158 -27.34486 -24.97524 -23.65993 -22.80170 -21.54602 -20.77511 -19.77345 -19.60560 -18.67742 -18.14086 -17.73246 -17.52302 -16.87427 -16.55135 -16.53999 -16.05405 -15.51082 -15.25781 -15.13112 -14.97458 -14.30365 -13.84657 -13.66069 -13.58930 -13.30950 -13.17542 -13.09140 -13.04261 -12.93466 -12.82685 -12.71769 -12.59451 -12.39466 -12.23844 -12.10381 -11.81641 -11.56479 -11.36030 -11.14440 -10.82524 -10.52075 -10.07895 -9.82310 -9.55090 -8.73770 -6.45340 -0.49419 0.42007 0.85583 1.24425 1.35711 1.45008 1.48707 2.16263 2.21379 2.55419 2.78747 3.27719 3.43374 3.53358 3.60823 3.81585 4.11535 4.16945 4.29519 4.37952 4.42656 4.47010 4.54722 4.69477 4.77063 4.84788 4.90423 4.92630 5.04592 5.07869 5.14715 5.20144 5.34439 5.41721 5.57415 5.62915 5.85405 5.89594 5.93966 6.09538 6.12028 6.52508 6.79678 6.85017 6.91846 8.23814 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.012665 B = 0.004436 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.262560 B = 6309.968456 C = 7280.813781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.039 3.961 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.500 4.500 8 H 0.077 0.923 9 C 0.064 3.936 10 C -0.140 4.140 11 C -0.122 4.122 12 C -0.143 4.143 13 C -0.634 4.634 14 S 2.717 3.283 15 O -0.997 6.997 16 O -0.983 6.983 17 N -1.094 6.094 18 C 0.165 3.835 19 H 0.103 0.897 20 C -0.194 4.194 21 C -0.132 4.132 22 C -0.070 4.070 23 H 0.098 0.902 24 C 0.080 3.920 25 O -0.592 6.592 26 C -0.112 4.112 27 C -0.144 4.144 28 H 0.291 0.709 29 H 0.111 0.889 30 H 0.125 0.875 31 H 0.132 0.868 32 H 0.421 0.579 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.075 0.925 36 H 0.040 0.960 37 H 0.395 0.605 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.475 -11.508 8.415 14.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.176 4.176 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.185 1.185 7 C -0.529 4.529 8 H 0.095 0.905 9 C 0.061 3.939 10 C -0.160 4.160 11 C -0.141 4.141 12 C -0.163 4.163 13 C -0.723 4.723 14 S 2.809 3.191 15 O -0.988 6.988 16 O -0.973 6.973 17 N -0.854 5.854 18 C 0.058 3.942 19 H 0.121 0.879 20 C -0.214 4.214 21 C -0.151 4.151 22 C -0.088 4.088 23 H 0.116 0.884 24 C 0.003 3.997 25 O -0.400 6.400 26 C -0.151 4.151 27 C -0.165 4.165 28 H 0.102 0.898 29 H 0.129 0.871 30 H 0.143 0.857 31 H 0.150 0.850 32 H 0.258 0.742 33 H 0.124 0.876 34 H 0.137 0.863 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.245 0.755 38 H 0.132 0.868 39 H 0.122 0.878 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.726 -11.915 7.556 14.592 hybrid contribution 0.662 2.082 0.468 2.235 sum -3.064 -9.833 8.023 13.055 Atomic orbital electron populations 1.69808 1.08855 1.30963 1.35059 1.26704 0.95521 1.04369 0.91042 0.85264 0.78870 0.75644 0.80083 1.18558 1.18888 1.18455 1.19820 0.98504 0.92390 1.42227 0.90534 1.18003 0.92630 0.92854 0.90433 1.21618 0.98267 0.97669 0.98438 1.21120 0.99826 0.92658 1.00511 1.20429 0.96722 0.97913 1.01253 1.30194 1.09176 1.19058 1.13826 1.00865 0.71996 0.73279 0.72928 1.93499 1.33489 1.87329 1.84441 1.93500 1.82353 1.58884 1.62517 1.55409 1.16650 1.87747 1.25640 1.20743 0.77671 0.93500 1.02248 0.87918 1.23685 1.00266 0.99432 0.98017 1.23338 0.98454 0.98409 0.94902 1.21077 0.98421 0.93161 0.96146 0.88422 1.22363 0.95666 0.95953 0.85736 1.86432 1.41783 1.78205 1.33586 1.22809 1.04333 0.95944 0.91971 1.20795 1.01005 0.92164 1.02563 0.89786 0.87078 0.85679 0.85025 0.74151 0.87580 0.86332 0.90698 0.94148 0.75545 0.86828 0.87753 0.87591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.43 10.95 21.83 0.24 -41.19 16 2 C 0.04 1.93 5.14 85.26 0.44 2.37 16 3 Si 0.98 37.48 29.60 68.60 2.03 39.51 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 5 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 6 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 7 C -0.50 -26.69 9.05 23.46 0.21 -26.48 16 8 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 9 C 0.06 3.41 5.57 -21.29 -0.12 3.29 16 10 C -0.14 -7.10 8.70 22.73 0.20 -6.91 16 11 C -0.12 -5.36 10.02 22.22 0.22 -5.14 16 12 C -0.14 -5.91 9.53 22.46 0.21 -5.70 16 13 C -0.63 -27.15 5.94 22.22 0.13 -27.02 16 14 S 2.72 97.35 5.71 -56.49 -0.32 97.03 16 15 O -1.00 -40.91 17.27 -128.00 -2.21 -43.12 16 16 O -0.98 -37.15 16.64 -128.00 -2.13 -39.28 16 17 N -1.09 -29.36 5.50 -169.62 -0.93 -30.30 16 18 C 0.16 3.98 3.56 44.94 0.16 4.14 16 19 H 0.10 2.48 7.56 -2.39 -0.02 2.46 16 20 C -0.19 -5.46 10.41 26.26 0.27 -5.19 16 21 C -0.13 -3.28 9.98 26.26 0.26 -3.02 16 22 C -0.07 -1.30 3.17 -10.86 -0.03 -1.33 16 23 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 24 C 0.08 1.40 6.31 71.98 0.45 1.85 16 25 O -0.59 -11.49 13.55 -148.98 -2.02 -13.51 16 26 C -0.11 -1.82 6.37 31.71 0.20 -1.62 16 27 C -0.14 -7.08 9.26 22.73 0.21 -6.87 16 28 H 0.29 13.26 8.30 -92.71 -0.77 12.50 16 29 H 0.11 5.81 6.16 -2.91 -0.02 5.80 16 30 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 31 H 0.13 4.72 7.59 -2.91 -0.02 4.70 16 32 H 0.42 9.43 7.23 -96.74 -0.70 8.73 16 33 H 0.11 3.62 8.06 -2.91 -0.02 3.60 16 34 H 0.12 3.08 8.06 -2.91 -0.02 3.06 16 35 H 0.07 0.90 8.10 -2.39 -0.02 0.88 16 36 H 0.04 0.77 6.56 -2.39 -0.02 0.75 16 37 H 0.40 4.32 9.12 -74.06 -0.68 3.64 16 38 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.10 1.33 7.81 -2.39 -0.02 1.31 16 40 H 0.11 5.12 7.60 -2.91 -0.02 5.09 16 Total: -1.00 -68.44 347.94 -2.81 -71.24 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: -0.29 Total: 37.24 kcal Atomic # 6 Polarization: -80.45 SS G_CDS: 2.83 Total: -77.62 kcal Atomic # 7 Polarization: -70.79 SS G_CDS: -0.69 Total: -71.49 kcal Atomic # 8 Polarization: -89.54 SS G_CDS: -6.36 Total: -95.90 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Atomic # 16 Polarization: 97.35 SS G_CDS: -0.32 Total: 97.03 kcal Total: -68.44 -2.81 -71.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619488822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.670 kcal (2) G-P(sol) polarization free energy of solvation -68.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds