Wall clock time and date at job start Fri Apr 10 2020 14:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86803 * 119.99719 * 2 1 4 4 H 1.48501 * 109.47382 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47234 * 119.99687 * 3 2 1 6 6 H 1.48505 * 109.47145 * 239.99756 * 3 2 1 7 7 C 1.39941 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00350 * 162.29234 * 7 2 1 9 9 C 1.41400 * 119.99791 * 342.30471 * 7 2 1 10 10 C 1.40732 * 120.24423 * 335.44216 * 9 7 2 11 11 C 1.37599 * 119.74220 * 179.71838 * 10 9 7 12 12 C 1.38650 * 120.24724 * 0.58525 * 11 10 9 13 13 C 1.38615 * 120.50372 * 359.66413 * 12 11 10 14 14 S 1.76199 * 119.87287 * 180.02562 * 13 12 11 15 15 O 1.42101 * 106.40506 * 23.56588 * 14 13 12 16 16 O 1.42108 * 106.40141 * 156.48390 * 14 13 12 17 17 N 1.65597 * 107.21855 * 270.02411 * 14 13 12 18 18 C 1.48150 * 127.83935 * 90.02875 * 17 14 13 19 19 C 1.54388 * 104.61919 * 219.58478 * 18 17 14 20 20 H 1.08994 * 117.61736 * 115.21026 * 19 18 17 21 21 C 1.53001 * 118.12433 * 270.79297 * 19 18 17 22 22 C 1.54286 * 104.95996 * 336.13362 * 19 18 17 23 23 C 1.52994 * 121.82163 * 137.82258 * 22 19 18 24 24 O 1.42896 * 109.47802 * 179.97438 * 23 22 19 25 25 C 1.48153 * 127.83858 * 269.70697 * 17 14 13 26 26 C 1.37634 * 120.24751 * 0.05259 * 13 12 11 27 27 H 0.96998 * 120.00394 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.12537 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.86990 * 180.27452 * 11 10 9 30 30 H 1.08007 * 119.74621 * 179.69287 * 12 11 10 31 31 H 1.08998 * 110.40382 * 338.36836 * 18 17 14 32 32 H 1.09005 * 110.40533 * 100.79978 * 18 17 14 33 33 H 1.08996 * 117.44297 * 199.19079 * 21 19 18 34 34 H 1.09002 * 117.43905 * 343.93265 * 21 19 18 35 35 H 1.09002 * 109.47143 * 300.00610 * 23 22 19 36 36 H 1.09006 * 109.47333 * 59.99628 * 23 22 19 37 37 H 0.96697 * 114.00530 * 179.97438 * 24 23 22 38 38 H 1.09003 * 110.40631 * 259.19958 * 25 17 14 39 39 H 1.08997 * 110.40330 * 21.63108 * 25 17 14 40 40 H 1.08001 * 120.12690 * 179.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 1.2771 2.7465 0.0006 5 1 3.0958 1.6966 1.2125 6 1 3.0959 1.6965 -1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0496 -1.2341 -0.2839 9 6 1.3512 -2.4073 0.3733 10 6 0.2200 -2.3636 1.2093 11 6 -0.4147 -3.5328 1.5609 12 6 0.0636 -4.7515 1.1046 13 6 1.1801 -4.8070 0.2849 14 16 1.7733 -6.3648 -0.2859 15 8 0.6690 -7.2577 -0.2355 16 8 2.5080 -6.1036 -1.4739 17 7 2.8679 -6.9114 0.8301 18 6 2.6079 -7.7520 2.0220 19 6 3.5192 -7.1633 3.1204 20 1 3.0379 -6.7112 3.9875 21 6 4.9418 -7.7117 3.2477 22 6 4.6542 -6.4503 2.3564 23 6 5.1792 -5.0792 2.7868 24 8 6.2226 -4.6690 1.9009 25 6 4.3303 -6.6761 0.8596 26 6 1.8274 -3.6497 -0.0842 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1516 -1.4156 1.5694 29 1 -1.2856 -3.5012 2.1987 30 1 -0.4378 -5.6647 1.3896 31 1 1.5611 -7.6794 2.3172 32 1 2.8760 -8.7893 1.8212 33 1 5.4629 -7.5426 4.1900 34 1 5.1616 -8.6577 2.7529 35 1 4.3674 -4.3526 2.7539 36 1 5.5694 -5.1421 3.8027 37 1 6.6030 -3.8059 2.1141 38 1 4.8633 -7.5479 0.4802 39 1 4.5846 -5.7907 0.2769 40 1 2.6973 -3.6952 -0.7225 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795178116.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:32 Heat of formation + Delta-G solvation = -63.686134 kcal Electronic energy + Delta-G solvation = -25746.755545 eV Core-core repulsion = 22040.393339 eV Total energy + Delta-G solvation = -3706.362206 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.73959 -37.64030 -36.67303 -36.36122 -35.29948 -33.85436 -33.23059 -30.08736 -29.78963 -28.92957 -26.05141 -25.49064 -24.94682 -21.88398 -21.06001 -20.96030 -19.24652 -18.75976 -17.95021 -17.27941 -16.93589 -15.99220 -15.48977 -15.32483 -15.21037 -15.02843 -14.68258 -14.13344 -13.89873 -13.44363 -13.35927 -13.00694 -12.60834 -12.41945 -12.32666 -12.16970 -11.92268 -11.61333 -11.56049 -11.40105 -11.36875 -11.27950 -11.08937 -11.03747 -10.86663 -10.63447 -10.33532 -10.19697 -9.80763 -9.66666 -9.48814 -9.35788 -8.86262 -8.03544 -7.71072 -6.93160 -4.54476 0.92629 2.20033 2.63122 2.97940 2.99947 3.05995 3.29088 3.51054 3.81271 4.05062 4.25013 4.39797 4.49426 4.63722 4.68699 4.97501 5.09544 5.10810 5.32095 5.38592 5.52131 5.57354 5.61812 5.71023 5.83610 5.95190 5.99654 6.01911 6.05971 6.16988 6.33558 6.43003 6.65246 6.75404 6.89984 7.03649 7.21232 7.38294 7.65698 7.71528 7.79256 7.93336 8.38852 8.65960 8.70906 10.02488 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.013207 B = 0.004884 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.623783 B = 5731.621497 C = 6824.946363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.277 1.277 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.461 4.461 8 H 0.082 0.918 9 C 0.092 3.908 10 C -0.119 4.119 11 C -0.121 4.121 12 C -0.147 4.147 13 C -0.630 4.630 14 S 2.704 3.296 15 O -0.970 6.970 16 O -0.964 6.964 17 N -1.018 6.018 18 C 0.153 3.847 19 C -0.159 4.159 20 H 0.120 0.880 21 C -0.136 4.136 22 C -0.147 4.147 23 C 0.123 3.877 24 O -0.568 6.568 25 C 0.168 3.832 26 C -0.124 4.124 27 H 0.284 0.716 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.059 0.941 36 H 0.046 0.954 37 H 0.381 0.619 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.046 -8.452 8.661 14.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.490 4.490 8 H 0.100 0.900 9 C 0.089 3.911 10 C -0.139 4.139 11 C -0.140 4.140 12 C -0.168 4.168 13 C -0.722 4.722 14 S 2.802 3.198 15 O -0.961 6.961 16 O -0.955 6.955 17 N -0.854 5.854 18 C 0.027 3.973 19 C -0.179 4.179 20 H 0.138 0.862 21 C -0.173 4.173 22 C -0.149 4.149 23 C 0.045 3.955 24 O -0.373 6.373 25 C 0.043 3.957 26 C -0.145 4.145 27 H 0.095 0.905 28 H 0.142 0.858 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.228 0.772 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.364 -9.300 7.463 14.015 hybrid contribution 0.178 2.102 0.828 2.266 sum 7.542 -7.198 8.291 13.321 Atomic orbital electron populations 1.69772 1.07673 1.29738 1.34705 1.25933 0.94769 1.01531 0.92065 0.86297 0.80121 0.79851 0.80116 1.20233 1.18768 1.18772 1.19566 0.98305 0.90977 1.40151 0.90002 1.17669 0.91856 0.91974 0.89629 1.21636 0.97592 0.97082 0.97547 1.20800 0.99259 0.93172 1.00816 1.20062 0.97210 0.97370 1.02170 1.29818 1.08905 1.17999 1.15484 1.01329 0.71906 0.74232 0.72356 1.93506 1.51651 1.64483 1.86448 1.93533 1.72583 1.86312 1.43069 1.59697 1.18708 1.65069 1.41908 1.21443 0.99503 0.93556 0.82761 1.23846 0.90245 1.03519 1.00251 0.86227 1.23804 0.96669 0.96486 1.00364 1.23411 1.04113 0.93450 0.93905 1.21354 0.89828 0.92886 0.91395 1.86440 1.53784 1.40851 1.56257 1.21311 0.78868 1.02136 0.93402 1.20737 1.00928 0.91706 1.01128 0.90494 0.85778 0.88436 0.87753 0.89519 0.90848 0.88085 0.88384 0.92313 0.93561 0.77160 0.90906 0.88848 0.87166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.77 10.95 55.55 0.61 -19.16 16 2 C 0.08 1.81 5.14 -17.35 -0.09 1.72 16 3 Si 0.91 17.88 29.59 -169.99 -5.03 12.85 16 4 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.46 -11.74 9.05 -37.74 -0.34 -12.08 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 9 C 0.09 2.38 5.57 -106.82 -0.60 1.78 16 10 C -0.12 -2.95 8.70 -38.87 -0.34 -3.28 16 11 C -0.12 -2.72 10.02 -39.66 -0.40 -3.12 16 12 C -0.15 -3.23 9.53 -39.29 -0.37 -3.60 16 13 C -0.63 -14.08 5.97 -39.66 -0.24 -14.32 16 14 S 2.70 53.68 6.02 -107.50 -0.65 53.03 16 15 O -0.97 -20.52 16.97 -57.17 -0.97 -21.49 16 16 O -0.96 -21.42 16.97 -57.17 -0.97 -22.39 16 17 N -1.02 -16.10 3.72 -110.04 -0.41 -16.51 16 18 C 0.15 1.92 6.87 -2.41 -0.02 1.90 16 19 C -0.16 -1.73 6.89 -89.22 -0.61 -2.35 16 20 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 21 C -0.14 -1.25 10.10 -24.50 -0.25 -1.50 16 22 C -0.15 -1.80 2.87 -150.66 -0.43 -2.23 16 23 C 0.12 1.48 7.37 37.15 0.27 1.75 16 24 O -0.57 -7.01 13.10 -35.23 -0.46 -7.48 16 25 C 0.17 2.43 6.57 -2.19 -0.01 2.41 16 26 C -0.12 -3.00 9.26 -38.87 -0.36 -3.36 16 27 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 28 H 0.12 3.12 6.16 -52.48 -0.32 2.80 16 29 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 30 H 0.10 2.07 7.60 -52.48 -0.40 1.67 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.45 8.07 -51.93 -0.42 0.03 16 37 H 0.38 3.12 9.12 45.56 0.42 3.54 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.09 1.50 7.70 -51.93 -0.40 1.10 16 40 H 0.11 2.61 7.60 -52.49 -0.40 2.21 16 LS Contribution 350.05 15.07 5.28 5.28 Total: -1.00 -31.67 350.05 -10.85 -42.52 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -4.46 Total: 9.62 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: -3.78 Total: -36.27 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.20 Total: -35.67 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -2.40 Total: -51.35 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: 53.68 SS G_CDS: -0.65 Total: 53.03 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.67 -10.85 -42.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795178116.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.169 kcal (2) G-P(sol) polarization free energy of solvation -31.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds