Wall clock time and date at job start Fri Apr 10 2020 14:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86803 * 119.99719 * 2 1 4 4 H 1.48501 * 109.47382 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47234 * 119.99687 * 3 2 1 6 6 H 1.48505 * 109.47145 * 239.99756 * 3 2 1 7 7 C 1.39941 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00350 * 162.29234 * 7 2 1 9 9 C 1.41400 * 119.99791 * 342.30471 * 7 2 1 10 10 C 1.40732 * 120.24423 * 335.44216 * 9 7 2 11 11 C 1.37599 * 119.74220 * 179.71838 * 10 9 7 12 12 C 1.38650 * 120.24724 * 0.58525 * 11 10 9 13 13 C 1.38615 * 120.50372 * 359.66413 * 12 11 10 14 14 S 1.76199 * 119.87287 * 180.02562 * 13 12 11 15 15 O 1.42101 * 106.40506 * 23.56588 * 14 13 12 16 16 O 1.42108 * 106.40141 * 156.48390 * 14 13 12 17 17 N 1.65597 * 107.21855 * 270.02411 * 14 13 12 18 18 C 1.48150 * 127.83935 * 90.02875 * 17 14 13 19 19 C 1.54388 * 104.61919 * 219.58478 * 18 17 14 20 20 H 1.08994 * 117.61736 * 115.21026 * 19 18 17 21 21 C 1.53001 * 118.12433 * 270.79297 * 19 18 17 22 22 C 1.54286 * 104.95996 * 336.13362 * 19 18 17 23 23 C 1.52994 * 121.82163 * 137.82258 * 22 19 18 24 24 O 1.42896 * 109.47802 * 179.97438 * 23 22 19 25 25 C 1.48153 * 127.83858 * 269.70697 * 17 14 13 26 26 C 1.37634 * 120.24751 * 0.05259 * 13 12 11 27 27 H 0.96998 * 120.00394 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.12537 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.86990 * 180.27452 * 11 10 9 30 30 H 1.08007 * 119.74621 * 179.69287 * 12 11 10 31 31 H 1.08998 * 110.40382 * 338.36836 * 18 17 14 32 32 H 1.09005 * 110.40533 * 100.79978 * 18 17 14 33 33 H 1.08996 * 117.44297 * 199.19079 * 21 19 18 34 34 H 1.09002 * 117.43905 * 343.93265 * 21 19 18 35 35 H 1.09002 * 109.47143 * 300.00610 * 23 22 19 36 36 H 1.09006 * 109.47333 * 59.99628 * 23 22 19 37 37 H 0.96697 * 114.00530 * 179.97438 * 24 23 22 38 38 H 1.09003 * 110.40631 * 259.19958 * 25 17 14 39 39 H 1.08997 * 110.40330 * 21.63108 * 25 17 14 40 40 H 1.08001 * 120.12690 * 179.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 1.2771 2.7465 0.0006 5 1 3.0958 1.6966 1.2125 6 1 3.0959 1.6965 -1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0496 -1.2341 -0.2839 9 6 1.3512 -2.4073 0.3733 10 6 0.2200 -2.3636 1.2093 11 6 -0.4147 -3.5328 1.5609 12 6 0.0636 -4.7515 1.1046 13 6 1.1801 -4.8070 0.2849 14 16 1.7733 -6.3648 -0.2859 15 8 0.6690 -7.2577 -0.2355 16 8 2.5080 -6.1036 -1.4739 17 7 2.8679 -6.9114 0.8301 18 6 2.6079 -7.7520 2.0220 19 6 3.5192 -7.1633 3.1204 20 1 3.0379 -6.7112 3.9875 21 6 4.9418 -7.7117 3.2477 22 6 4.6542 -6.4503 2.3564 23 6 5.1792 -5.0792 2.7868 24 8 6.2226 -4.6690 1.9009 25 6 4.3303 -6.6761 0.8596 26 6 1.8274 -3.6497 -0.0842 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1516 -1.4156 1.5694 29 1 -1.2856 -3.5012 2.1987 30 1 -0.4378 -5.6647 1.3896 31 1 1.5611 -7.6794 2.3172 32 1 2.8760 -8.7893 1.8212 33 1 5.4629 -7.5426 4.1900 34 1 5.1616 -8.6577 2.7529 35 1 4.3674 -4.3526 2.7539 36 1 5.5694 -5.1421 3.8027 37 1 6.6030 -3.8059 2.1141 38 1 4.8633 -7.5479 0.4802 39 1 4.5846 -5.7907 0.2769 40 1 2.6973 -3.6952 -0.7225 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795178116.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:31 Heat of formation + Delta-G solvation = -86.443865 kcal Electronic energy + Delta-G solvation = -25747.742395 eV Core-core repulsion = 22040.393339 eV Total energy + Delta-G solvation = -3707.349055 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.69976 -39.47620 -38.34991 -37.31562 -36.98915 -35.69683 -34.30191 -31.94970 -31.61741 -29.91845 -27.37838 -26.99352 -26.04487 -23.67224 -22.83682 -21.90773 -20.34929 -20.21750 -19.55414 -18.62994 -18.02867 -17.78970 -17.07562 -16.76175 -16.54619 -16.30551 -16.04760 -15.42432 -15.19312 -15.02446 -14.92805 -14.34525 -13.97682 -13.77722 -13.61748 -13.40310 -13.34606 -13.25971 -13.16827 -13.09425 -13.09087 -12.89787 -12.59477 -12.26479 -12.22582 -12.09520 -11.60188 -11.42493 -11.21176 -11.15766 -11.08925 -10.38562 -10.13544 -9.85120 -9.59283 -8.75170 -6.47946 -0.64368 0.37419 0.81723 1.35766 1.45316 1.48739 2.02729 2.16301 2.43061 2.53335 2.73390 3.20851 3.28673 3.48895 3.55823 3.78008 3.90732 4.18171 4.20685 4.26254 4.39766 4.42895 4.54414 4.60061 4.79348 4.79438 4.86219 4.87628 4.92666 4.97043 5.00668 5.03736 5.13789 5.15708 5.31711 5.35316 5.40269 5.53883 5.85022 5.90330 6.07603 6.49187 6.76931 6.81699 6.90814 8.22929 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.013207 B = 0.004884 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.623783 B = 5731.621497 C = 6824.946363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.037 3.963 3 Si 0.985 3.015 4 H -0.266 1.266 5 H -0.255 1.255 6 H -0.262 1.262 7 C -0.497 4.497 8 H 0.079 0.921 9 C 0.065 3.935 10 C -0.140 4.140 11 C -0.121 4.121 12 C -0.148 4.148 13 C -0.638 4.638 14 S 2.730 3.270 15 O -0.981 6.981 16 O -0.993 6.993 17 N -1.016 6.016 18 C 0.140 3.860 19 C -0.156 4.156 20 H 0.130 0.870 21 C -0.100 4.100 22 C -0.175 4.175 23 C 0.124 3.876 24 O -0.586 6.586 25 C 0.161 3.839 26 C -0.145 4.145 27 H 0.292 0.708 28 H 0.115 0.885 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.125 0.875 34 H 0.114 0.886 35 H 0.029 0.971 36 H 0.075 0.925 37 H 0.396 0.604 38 H 0.092 0.908 39 H 0.065 0.935 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.899 -9.668 10.571 16.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.179 4.179 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.180 1.180 6 H -0.186 1.186 7 C -0.526 4.526 8 H 0.097 0.903 9 C 0.062 3.938 10 C -0.159 4.159 11 C -0.140 4.140 12 C -0.168 4.168 13 C -0.727 4.727 14 S 2.825 3.175 15 O -0.971 6.971 16 O -0.984 6.984 17 N -0.855 5.855 18 C 0.016 3.984 19 C -0.176 4.176 20 H 0.147 0.853 21 C -0.137 4.137 22 C -0.178 4.178 23 C 0.046 3.954 24 O -0.394 6.394 25 C 0.036 3.964 26 C -0.166 4.166 27 H 0.103 0.897 28 H 0.133 0.867 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.143 0.857 34 H 0.132 0.868 35 H 0.048 0.952 36 H 0.093 0.907 37 H 0.245 0.755 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.196 -10.495 9.385 16.292 hybrid contribution -0.076 2.338 0.267 2.355 sum 8.120 -8.157 9.653 15.021 Atomic orbital electron populations 1.69813 1.09057 1.31138 1.34934 1.26787 0.95525 1.04624 0.90917 0.85203 0.78803 0.75243 0.80222 1.18985 1.17952 1.18601 1.19821 0.98534 0.92214 1.41991 0.90320 1.18019 0.92697 0.92767 0.90311 1.21649 0.98143 0.97665 0.98480 1.21140 0.99735 0.92565 1.00571 1.20434 0.96816 0.98215 1.01377 1.30302 1.08756 1.19057 1.14575 1.00451 0.71758 0.73056 0.72247 1.93480 1.52789 1.64017 1.86858 1.93489 1.73100 1.86509 1.45289 1.59396 1.18721 1.64815 1.42549 1.21831 1.00326 0.94335 0.81887 1.23900 0.90573 1.03413 0.99716 0.85263 1.23961 0.94534 0.95103 1.00073 1.23437 1.06475 0.95215 0.92656 1.21365 0.89016 0.92276 0.92734 1.86401 1.53862 1.42093 1.57048 1.21463 0.77869 1.01776 0.95248 1.20739 1.01434 0.92337 1.02087 0.89667 0.86714 0.85374 0.85187 0.89372 0.88215 0.85664 0.86806 0.95227 0.90682 0.75474 0.88966 0.91684 0.88036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.99 10.95 21.82 0.24 -41.75 16 2 C 0.04 1.82 5.14 85.26 0.44 2.26 16 3 Si 0.99 36.99 29.59 68.60 2.03 39.02 16 4 H -0.27 -9.38 7.11 99.48 0.71 -8.68 16 5 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 6 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 7 C -0.50 -26.49 9.05 23.46 0.21 -26.27 16 8 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 9 C 0.07 3.52 5.57 -21.29 -0.12 3.41 16 10 C -0.14 -7.14 8.70 22.73 0.20 -6.94 16 11 C -0.12 -5.44 10.02 22.22 0.22 -5.21 16 12 C -0.15 -6.43 9.53 22.46 0.21 -6.22 16 13 C -0.64 -29.07 5.97 22.22 0.13 -28.94 16 14 S 2.73 108.86 6.02 -56.49 -0.34 108.52 16 15 O -0.98 -40.63 16.97 -128.00 -2.17 -42.81 16 16 O -0.99 -45.33 16.97 -128.00 -2.17 -47.50 16 17 N -1.02 -31.28 3.72 -502.06 -1.87 -33.15 16 18 C 0.14 3.17 6.87 86.53 0.59 3.76 16 19 C -0.16 -2.94 6.89 -9.89 -0.07 -3.01 16 20 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 21 C -0.10 -1.41 10.10 32.04 0.32 -1.08 16 22 C -0.18 -3.98 2.87 -49.69 -0.14 -4.12 16 23 C 0.12 2.87 7.37 71.98 0.53 3.40 16 24 O -0.59 -14.41 13.10 -148.98 -1.95 -16.36 16 25 C 0.16 4.56 6.57 86.67 0.57 5.12 16 26 C -0.14 -7.40 9.26 22.73 0.21 -7.19 16 27 H 0.29 13.40 8.30 -92.71 -0.77 12.63 16 28 H 0.12 5.99 6.16 -2.91 -0.02 5.97 16 29 H 0.13 4.85 8.06 -2.91 -0.02 4.82 16 30 H 0.13 4.93 7.60 -2.91 -0.02 4.91 16 31 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 1.28 8.07 -2.38 -0.02 1.26 16 37 H 0.40 6.51 9.12 -74.06 -0.68 5.83 16 38 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.06 2.19 7.70 -2.39 -0.02 2.17 16 40 H 0.10 5.18 7.60 -2.91 -0.02 5.16 16 Total: -1.00 -70.51 350.05 -2.52 -73.03 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: 0.39 Total: 32.03 kcal Atomic # 6 Polarization: -74.35 SS G_CDS: 3.32 Total: -71.03 kcal Atomic # 7 Polarization: -73.27 SS G_CDS: -1.63 Total: -74.89 kcal Atomic # 8 Polarization: -100.38 SS G_CDS: -6.30 Total: -106.68 kcal Atomic # 14 Polarization: 36.99 SS G_CDS: 2.03 Total: 39.02 kcal Atomic # 16 Polarization: 108.86 SS G_CDS: -0.34 Total: 108.52 kcal Total: -70.51 -2.52 -73.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795178116.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.417 kcal (2) G-P(sol) polarization free energy of solvation -70.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds