Wall clock time and date at job start Fri Apr 10 2020 14:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46943 * 257.13619 * 3 2 1 5 5 C 1.52996 * 109.46728 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47735 * 54.99643 * 5 4 3 7 7 O 1.42898 * 109.47175 * 294.99390 * 5 4 3 8 8 C 1.53004 * 109.47163 * 174.99927 * 5 4 3 9 9 N 1.46501 * 109.46968 * 184.99852 * 8 5 4 10 10 S 1.65610 * 119.99474 * 164.53337 * 9 8 5 11 11 O 1.42102 * 106.39861 * 307.76916 * 10 9 8 12 12 O 1.42100 * 106.39925 * 174.85382 * 10 9 8 13 13 C 1.76196 * 107.21921 * 61.31403 * 10 9 8 14 14 C 1.37642 * 120.12311 * 244.51595 * 13 10 9 15 15 C 1.38616 * 120.24387 * 180.29870 * 14 13 10 16 16 C 1.38656 * 120.50076 * 359.44775 * 15 14 13 17 17 C 1.37601 * 120.24962 * 0.55235 * 16 15 14 18 18 C 1.40694 * 120.12883 * 64.54023 * 13 10 9 19 19 C 1.41393 * 120.24409 * 359.95524 * 18 13 10 20 20 H 1.07997 * 120.00150 * 331.94089 * 19 18 13 21 21 C 1.39946 * 119.99831 * 151.94696 * 19 18 13 22 22 N 1.30820 * 119.99988 * 347.90964 * 21 19 18 23 23 Si 1.86806 * 119.99746 * 167.91136 * 21 19 18 24 24 H 1.48503 * 109.46879 * 89.99917 * 23 21 19 25 25 H 1.48496 * 109.47257 * 209.99661 * 23 21 19 26 26 H 1.48496 * 109.47409 * 330.00182 * 23 21 19 27 27 H 4.44642 * 5.63402 * 179.97438 * 4 1 2 28 28 H 1.08997 * 109.46729 * 137.13172 * 3 2 1 29 29 H 1.09007 * 109.46788 * 17.13335 * 3 2 1 30 30 H 1.08997 * 109.47773 * 60.00192 * 4 3 2 31 31 H 1.09001 * 109.46836 * 299.99769 * 4 3 2 32 32 H 0.96702 * 114.00186 * 300.00373 * 7 5 4 33 33 H 1.08999 * 109.47343 * 64.99929 * 8 5 4 34 34 H 1.09000 * 109.46726 * 304.99616 * 8 5 4 35 35 H 0.96994 * 120.00367 * 344.52903 * 9 8 5 36 36 H 1.07995 * 119.88066 * 0.02562 * 14 13 10 37 37 H 1.07995 * 119.74522 * 179.70067 * 15 14 13 38 38 H 1.08002 * 119.87691 * 180.29786 * 16 15 14 39 39 H 1.07997 * 120.12562 * 179.74913 * 17 16 15 40 40 H 0.97006 * 119.99818 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1559 0.3220 1.4063 5 6 4.6858 0.3233 1.4061 6 1 5.0486 1.0131 0.6441 7 8 5.1633 -0.9934 1.1227 8 6 5.1957 0.7661 2.7791 9 7 6.6556 0.8824 2.7436 10 16 7.4505 1.6997 3.9448 11 8 6.8271 2.9728 4.0442 12 8 8.8389 1.5317 3.6935 13 6 7.1136 0.8611 5.4574 14 6 6.4042 1.4921 6.4539 15 6 6.1431 0.8370 7.6473 16 6 6.5822 -0.4629 7.8471 17 6 7.2932 -1.1132 6.8647 18 6 7.5691 -0.4559 5.6513 19 6 8.2984 -1.1142 4.6345 20 1 8.1403 -0.8502 3.5993 21 6 9.2250 -2.1080 4.9696 22 7 9.5922 -2.2668 6.2151 23 14 9.9374 -3.2078 3.6382 24 1 11.1722 -2.5888 3.0931 25 1 10.2632 -4.5366 4.2156 26 1 8.9432 -3.3724 2.5475 27 1 -1.0500 0.0002 -0.0001 28 1 3.0090 0.7540 -0.6991 29 1 3.0098 -0.9813 -0.3028 30 1 2.7930 -0.4313 2.1054 31 1 2.7921 1.3039 1.7090 32 1 4.8785 -1.6610 1.7617 33 1 4.9080 0.0288 3.5286 34 1 4.7603 1.7323 3.0340 35 1 7.1567 0.4807 2.0167 36 1 6.0536 2.5030 6.3073 37 1 5.5900 1.3415 8.4256 38 1 6.3690 -0.9655 8.7790 39 1 7.6377 -2.1243 7.0241 40 1 10.2347 -2.9555 6.4473 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867226529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:58 Heat of formation + Delta-G solvation = -70.175126 kcal Electronic energy + Delta-G solvation = -25236.130460 eV Core-core repulsion = 21529.486870 eV Total energy + Delta-G solvation = -3706.643590 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.38016 -37.60378 -36.21540 -34.84342 -34.82863 -34.08989 -33.83260 -31.45026 -30.24260 -29.57424 -27.88920 -25.55679 -23.75878 -21.78146 -21.53933 -21.14363 -18.58506 -18.25261 -17.71782 -16.92478 -16.72423 -16.26547 -15.92335 -15.42462 -15.13876 -14.54509 -14.38615 -14.23902 -13.98850 -13.30482 -13.20348 -13.07071 -12.91317 -12.76364 -12.61058 -11.90392 -11.62472 -11.53040 -11.28805 -11.24934 -11.18063 -11.09283 -11.01781 -10.93931 -10.71505 -10.54983 -10.52528 -10.24588 -9.92256 -9.84574 -9.47300 -9.43790 -8.79325 -8.05617 -7.62694 -7.04491 -4.77541 1.52749 2.32266 2.64232 2.68523 2.72270 2.97414 3.02003 3.12054 3.77674 3.86411 4.17881 4.38515 4.42284 4.69711 4.73786 4.89662 4.97110 5.24014 5.30998 5.34031 5.47537 5.62808 5.69106 5.79680 5.86355 5.94185 6.02652 6.14790 6.21986 6.28595 6.40493 6.76519 6.93914 7.07083 7.29162 7.45482 7.47334 7.54082 7.65143 7.69619 7.79230 7.88003 8.27737 8.48871 8.63327 9.88184 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.011200 B = 0.004503 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.308200 B = 6216.778638 C = 7039.979579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.182 4.182 3 C -0.011 4.011 4 C -0.147 4.147 5 C 0.102 3.898 6 H 0.107 0.893 7 O -0.557 6.557 8 C 0.093 3.907 9 N -1.117 6.117 10 S 2.700 3.300 11 O -1.000 7.000 12 O -0.964 6.964 13 C -0.777 4.777 14 C -0.003 4.003 15 C -0.251 4.251 16 C -0.077 4.077 17 C -0.159 4.159 18 C 0.186 3.814 19 C -0.444 4.444 20 H 0.090 0.910 21 C 0.080 3.920 22 N -0.776 5.776 23 Si 0.915 3.085 24 H -0.262 1.262 25 H -0.274 1.274 26 H -0.254 1.254 27 H 0.215 0.785 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.379 0.621 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.415 0.585 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.125 0.875 40 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.705 -0.685 -7.945 13.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.182 4.182 3 C -0.047 4.047 4 C -0.186 4.186 5 C 0.042 3.958 6 H 0.125 0.875 7 O -0.362 6.362 8 C -0.035 4.035 9 N -0.875 5.875 10 S 2.798 3.202 11 O -0.990 6.990 12 O -0.955 6.955 13 C -0.872 4.872 14 C -0.023 4.023 15 C -0.272 4.272 16 C -0.096 4.096 17 C -0.179 4.179 18 C 0.181 3.819 19 C -0.472 4.472 20 H 0.107 0.893 21 C -0.141 4.141 22 N -0.399 5.399 23 Si 0.738 3.262 24 H -0.187 1.187 25 H -0.199 1.199 26 H -0.177 1.177 27 H 0.232 0.768 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.227 0.773 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.249 0.751 36 H 0.125 0.875 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.143 0.857 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.835 0.342 -8.304 12.877 hybrid contribution -0.243 -1.463 0.426 1.543 sum -10.078 -1.121 -7.878 12.841 Atomic orbital electron populations 1.24891 0.95985 1.01736 1.01047 1.23275 0.94695 0.99958 1.00235 1.18700 0.84237 1.03852 0.97925 1.22246 0.95934 1.03726 0.96675 1.22140 0.91667 0.85422 0.96619 0.87491 1.86564 1.77196 1.17575 1.54894 1.21818 0.81098 1.02429 0.98115 1.55562 1.14367 1.75394 1.42153 1.01081 0.72842 0.72701 0.73603 1.93444 1.78238 1.39910 1.87442 1.93547 1.30389 1.86463 1.85080 1.29834 1.28080 1.08733 1.20572 1.20251 0.92560 0.96913 0.92579 1.20483 1.11258 0.97021 0.98431 1.20903 0.96644 0.94668 0.97371 1.21519 1.00856 1.00687 0.94804 1.16997 0.85208 0.87411 0.92268 1.19891 1.16813 1.15505 0.94987 0.89255 1.25967 0.95220 0.96283 0.96626 1.69784 1.23665 1.27471 1.18987 0.86175 0.80489 0.78560 0.81014 1.18698 1.19882 1.17703 0.76809 0.89512 0.88768 0.90657 0.90167 0.77288 0.91237 0.90073 0.75091 0.87485 0.88792 0.88865 0.85738 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.05 19.25 29.55 0.57 -1.48 16 2 C -0.18 -1.87 13.34 -37.12 -0.50 -2.37 16 3 C -0.01 -0.09 5.60 -29.52 -0.17 -0.26 16 4 C -0.15 -1.34 4.85 -26.73 -0.13 -1.47 16 5 C 0.10 1.09 3.06 -26.73 -0.08 1.01 16 6 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 7 O -0.56 -6.36 12.67 -35.23 -0.45 -6.81 16 8 C 0.09 1.26 5.81 -4.04 -0.02 1.24 16 9 N -1.12 -18.72 5.01 -10.61 -0.05 -18.78 16 10 S 2.70 57.96 4.94 -107.50 -0.53 57.43 16 11 O -1.00 -22.34 16.56 -57.17 -0.95 -23.29 16 12 O -0.96 -23.88 16.60 -57.17 -0.95 -24.83 16 13 C -0.78 -18.18 5.86 -38.87 -0.23 -18.41 16 14 C 0.00 -0.07 9.54 -39.66 -0.38 -0.45 16 15 C -0.25 -5.42 10.05 -39.29 -0.39 -5.81 16 16 C -0.08 -1.70 10.02 -39.66 -0.40 -2.09 16 17 C -0.16 -3.85 8.67 -38.87 -0.34 -4.19 16 18 C 0.19 4.63 5.55 -106.83 -0.59 4.03 16 19 C -0.44 -10.89 7.67 -37.74 -0.29 -11.18 16 20 H 0.09 2.05 5.78 -52.49 -0.30 1.75 16 21 C 0.08 1.90 5.23 -17.34 -0.09 1.81 16 22 N -0.78 -18.88 10.87 55.55 0.60 -18.27 16 23 Si 0.91 17.80 29.58 -169.99 -5.03 12.77 16 24 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 25 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 26 H -0.25 -4.75 7.11 56.52 0.40 -4.35 16 27 H 0.22 1.28 7.80 -54.09 -0.42 0.85 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.83 7.82 -51.92 -0.41 0.42 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.38 3.49 9.05 45.56 0.41 3.90 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.08 7.83 -51.93 -0.41 0.67 16 35 H 0.41 6.49 8.36 -34.48 -0.29 6.20 16 36 H 0.11 2.21 7.33 -52.49 -0.38 1.82 16 37 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.12 3.05 6.22 -52.49 -0.33 2.72 16 40 H 0.29 6.29 8.30 -40.82 -0.34 5.96 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -31.65 357.37 -9.22 -40.87 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -4.22 Total: 15.14 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: -3.04 Total: -39.61 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.55 Total: -37.05 kcal Atomic # 8 Polarization: -52.58 SS G_CDS: -2.34 Total: -54.93 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Atomic # 16 Polarization: 57.96 SS G_CDS: -0.53 Total: 57.43 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.65 -9.22 -40.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867226529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.308 kcal (2) G-P(sol) polarization free energy of solvation -31.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds