Wall clock time and date at job start Fri Apr 10 2020 14:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46943 * 257.13619 * 3 2 1 5 5 C 1.52996 * 109.46728 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47735 * 54.99643 * 5 4 3 7 7 O 1.42898 * 109.47175 * 294.99390 * 5 4 3 8 8 C 1.53004 * 109.47163 * 174.99927 * 5 4 3 9 9 N 1.46501 * 109.46968 * 184.99852 * 8 5 4 10 10 S 1.65610 * 119.99474 * 164.53337 * 9 8 5 11 11 O 1.42102 * 106.39861 * 307.76916 * 10 9 8 12 12 O 1.42100 * 106.39925 * 174.85382 * 10 9 8 13 13 C 1.76196 * 107.21921 * 61.31403 * 10 9 8 14 14 C 1.37642 * 120.12311 * 244.51595 * 13 10 9 15 15 C 1.38616 * 120.24387 * 180.29870 * 14 13 10 16 16 C 1.38656 * 120.50076 * 359.44775 * 15 14 13 17 17 C 1.37601 * 120.24962 * 0.55235 * 16 15 14 18 18 C 1.40694 * 120.12883 * 64.54023 * 13 10 9 19 19 C 1.41393 * 120.24409 * 359.95524 * 18 13 10 20 20 H 1.07997 * 120.00150 * 331.94089 * 19 18 13 21 21 C 1.39946 * 119.99831 * 151.94696 * 19 18 13 22 22 N 1.30820 * 119.99988 * 347.90964 * 21 19 18 23 23 Si 1.86806 * 119.99746 * 167.91136 * 21 19 18 24 24 H 1.48503 * 109.46879 * 89.99917 * 23 21 19 25 25 H 1.48496 * 109.47257 * 209.99661 * 23 21 19 26 26 H 1.48496 * 109.47409 * 330.00182 * 23 21 19 27 27 H 4.44642 * 5.63402 * 179.97438 * 4 1 2 28 28 H 1.08997 * 109.46729 * 137.13172 * 3 2 1 29 29 H 1.09007 * 109.46788 * 17.13335 * 3 2 1 30 30 H 1.08997 * 109.47773 * 60.00192 * 4 3 2 31 31 H 1.09001 * 109.46836 * 299.99769 * 4 3 2 32 32 H 0.96702 * 114.00186 * 300.00373 * 7 5 4 33 33 H 1.08999 * 109.47343 * 64.99929 * 8 5 4 34 34 H 1.09000 * 109.46726 * 304.99616 * 8 5 4 35 35 H 0.96994 * 120.00367 * 344.52903 * 9 8 5 36 36 H 1.07995 * 119.88066 * 0.02562 * 14 13 10 37 37 H 1.07995 * 119.74522 * 179.70067 * 15 14 13 38 38 H 1.08002 * 119.87691 * 180.29786 * 16 15 14 39 39 H 1.07997 * 120.12562 * 179.74913 * 17 16 15 40 40 H 0.97006 * 119.99818 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1559 0.3220 1.4063 5 6 4.6858 0.3233 1.4061 6 1 5.0486 1.0131 0.6441 7 8 5.1633 -0.9934 1.1227 8 6 5.1957 0.7661 2.7791 9 7 6.6556 0.8824 2.7436 10 16 7.4505 1.6997 3.9448 11 8 6.8271 2.9728 4.0442 12 8 8.8389 1.5317 3.6935 13 6 7.1136 0.8611 5.4574 14 6 6.4042 1.4921 6.4539 15 6 6.1431 0.8370 7.6473 16 6 6.5822 -0.4629 7.8471 17 6 7.2932 -1.1132 6.8647 18 6 7.5691 -0.4559 5.6513 19 6 8.2984 -1.1142 4.6345 20 1 8.1403 -0.8502 3.5993 21 6 9.2250 -2.1080 4.9696 22 7 9.5922 -2.2668 6.2151 23 14 9.9374 -3.2078 3.6382 24 1 11.1722 -2.5888 3.0931 25 1 10.2632 -4.5366 4.2156 26 1 8.9432 -3.3724 2.5475 27 1 -1.0500 0.0002 -0.0001 28 1 3.0090 0.7540 -0.6991 29 1 3.0098 -0.9813 -0.3028 30 1 2.7930 -0.4313 2.1054 31 1 2.7921 1.3039 1.7090 32 1 4.8785 -1.6610 1.7617 33 1 4.9080 0.0288 3.5286 34 1 4.7603 1.7323 3.0340 35 1 7.1567 0.4807 2.0167 36 1 6.0536 2.5030 6.3073 37 1 5.5900 1.3415 8.4256 38 1 6.3690 -0.9655 8.7790 39 1 7.6377 -2.1243 7.0241 40 1 10.2347 -2.9555 6.4473 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867226529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:57 Heat of formation + Delta-G solvation = -92.735314 kcal Electronic energy + Delta-G solvation = -25237.108743 eV Core-core repulsion = 21529.486870 eV Total energy + Delta-G solvation = -3707.621873 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.40218 -39.25600 -38.00346 -36.64949 -35.76224 -35.59426 -35.13990 -32.25757 -31.99894 -31.34248 -28.86542 -27.33511 -24.70973 -23.44138 -22.93195 -22.49110 -20.18904 -19.48977 -18.96523 -18.43454 -18.09330 -17.42371 -17.26196 -16.97199 -16.43531 -16.02035 -15.73913 -15.27893 -15.13204 -14.97922 -14.88669 -14.45581 -14.03590 -13.79136 -13.66602 -13.53751 -13.25458 -12.98382 -12.93087 -12.84494 -12.83253 -12.76408 -12.46472 -12.31503 -12.12149 -11.81227 -11.64199 -11.31017 -11.17445 -11.13953 -10.94433 -10.75591 -10.22678 -9.82851 -9.42361 -8.78648 -6.59819 -0.14455 0.54356 0.98612 1.39026 1.50210 1.55025 1.91113 1.96549 2.17556 2.36728 2.64703 3.00394 3.41209 3.50811 3.60754 3.77101 3.96851 4.07840 4.21374 4.34085 4.38406 4.48948 4.51888 4.65002 4.72412 4.76898 4.93364 4.95888 5.09588 5.16838 5.22706 5.25155 5.31214 5.32897 5.53392 5.72141 5.84189 6.02041 6.09789 6.25568 6.49488 6.69238 6.75395 6.85002 6.88689 8.17153 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.011200 B = 0.004503 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.308200 B = 6216.778638 C = 7039.979579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.215 4.215 3 C -0.008 4.008 4 C -0.139 4.139 5 C 0.113 3.887 6 H 0.115 0.885 7 O -0.567 6.567 8 C 0.084 3.916 9 N -1.105 6.105 10 S 2.719 3.281 11 O -1.010 7.010 12 O -1.002 7.002 13 C -0.792 4.792 14 C -0.016 4.016 15 C -0.252 4.252 16 C -0.076 4.076 17 C -0.186 4.186 18 C 0.163 3.837 19 C -0.472 4.472 20 H 0.096 0.904 21 C 0.040 3.960 22 N -0.808 5.808 23 Si 0.974 3.026 24 H -0.270 1.270 25 H -0.260 1.260 26 H -0.241 1.241 27 H 0.241 0.759 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.388 0.612 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.421 0.579 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.114 0.886 40 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.124 -0.908 -8.673 14.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.215 4.215 3 C -0.045 4.045 4 C -0.177 4.177 5 C 0.053 3.947 6 H 0.133 0.867 7 O -0.374 6.374 8 C -0.042 4.042 9 N -0.866 5.866 10 S 2.816 3.184 11 O -1.000 7.000 12 O -0.993 6.993 13 C -0.886 4.886 14 C -0.035 4.035 15 C -0.272 4.272 16 C -0.095 4.095 17 C -0.206 4.206 18 C 0.159 3.841 19 C -0.500 4.500 20 H 0.113 0.887 21 C -0.178 4.178 22 N -0.432 5.432 23 Si 0.794 3.206 24 H -0.195 1.195 25 H -0.184 1.184 26 H -0.164 1.164 27 H 0.258 0.742 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.237 0.763 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.258 0.742 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.269 0.113 -9.005 14.426 hybrid contribution 0.082 -1.316 0.709 1.497 sum -11.188 -1.203 -8.295 13.979 Atomic orbital electron populations 1.25688 0.96965 1.00740 0.99967 1.23734 0.95556 1.00961 1.01288 1.18685 0.83850 1.04154 0.97776 1.22145 0.94420 1.04071 0.97073 1.22067 0.92608 0.85254 0.94799 0.86749 1.86545 1.77540 1.17995 1.55364 1.22126 0.78973 1.02918 1.00231 1.55161 1.15791 1.74952 1.40727 1.00349 0.72013 0.72538 0.73511 1.93422 1.78217 1.40651 1.87728 1.93489 1.33172 1.86996 1.85600 1.30125 1.27903 1.08485 1.22096 1.20573 0.92495 0.97688 0.92791 1.20882 1.10626 0.96826 0.98840 1.21244 0.95362 0.95019 0.97843 1.21578 1.02506 1.00735 0.95797 1.17291 0.85805 0.88169 0.92875 1.20172 1.17734 1.16709 0.95354 0.88656 1.26801 0.95249 0.97159 0.98624 1.69823 1.24495 1.28351 1.20565 0.85299 0.79464 0.77157 0.78691 1.19464 1.18444 1.16412 0.74242 0.88709 0.88741 0.90447 0.89771 0.76265 0.91356 0.89563 0.74247 0.86004 0.85605 0.86104 0.86792 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.64 19.25 74.32 1.43 -2.21 16 2 C -0.22 -4.12 13.34 31.13 0.42 -3.70 16 3 C -0.01 -0.13 5.60 28.79 0.16 0.03 16 4 C -0.14 -2.29 4.85 30.59 0.15 -2.14 16 5 C 0.11 2.24 3.06 30.59 0.09 2.33 16 6 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 7 O -0.57 -12.11 12.67 -148.98 -1.89 -13.99 16 8 C 0.08 2.19 5.81 86.38 0.50 2.70 16 9 N -1.11 -36.37 5.01 -187.48 -0.94 -37.31 16 10 S 2.72 116.63 4.94 -56.49 -0.28 116.35 16 11 O -1.01 -44.50 16.56 -128.00 -2.12 -46.62 16 12 O -1.00 -50.31 16.60 -128.00 -2.13 -52.44 16 13 C -0.79 -37.12 5.86 22.73 0.13 -36.98 16 14 C -0.02 -0.69 9.54 22.22 0.21 -0.48 16 15 C -0.25 -10.39 10.05 22.46 0.23 -10.17 16 16 C -0.08 -3.28 10.02 22.22 0.22 -3.05 16 17 C -0.19 -9.13 8.67 22.73 0.20 -8.93 16 18 C 0.16 8.22 5.55 -21.29 -0.12 8.10 16 19 C -0.47 -23.47 7.67 23.46 0.18 -23.29 16 20 H 0.10 4.42 5.78 -2.91 -0.02 4.41 16 21 C 0.04 1.90 5.23 85.26 0.45 2.34 16 22 N -0.81 -40.01 10.87 21.83 0.24 -39.78 16 23 Si 0.97 36.26 29.58 68.60 2.03 38.29 16 24 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 25 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 26 H -0.24 -8.40 7.11 99.48 0.71 -7.69 16 27 H 0.24 2.26 7.80 -4.42 -0.03 2.22 16 28 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.09 1.52 7.82 -2.38 -0.02 1.50 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.39 6.64 9.05 -74.06 -0.67 5.97 16 33 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.09 2.18 7.83 -2.39 -0.02 2.16 16 35 H 0.42 12.90 8.36 -96.75 -0.81 12.09 16 36 H 0.12 4.87 7.33 -2.91 -0.02 4.84 16 37 H 0.13 4.33 8.06 -2.91 -0.02 4.30 16 38 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 39 H 0.11 5.73 6.22 -2.91 -0.02 5.71 16 40 H 0.29 13.09 8.30 -92.70 -0.77 12.32 16 Total: -1.00 -67.55 357.37 -1.24 -68.79 By element: Atomic # 1 Polarization: 42.55 SS G_CDS: -0.40 Total: 42.15 kcal Atomic # 6 Polarization: -79.69 SS G_CDS: 4.25 Total: -75.44 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -0.70 Total: -77.08 kcal Atomic # 8 Polarization: -106.92 SS G_CDS: -6.13 Total: -113.06 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.03 Total: 38.29 kcal Atomic # 16 Polarization: 116.63 SS G_CDS: -0.28 Total: 116.35 kcal Total: -67.55 -1.24 -68.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867226529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.950 kcal (2) G-P(sol) polarization free energy of solvation -67.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds