Wall clock time and date at job start Fri Apr 10 2020 14:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46945 * 2 1 4 4 C 1.53244 * 109.46435 * 240.01253 * 2 1 3 5 5 H 1.09002 * 109.57506 * 177.86056 * 4 2 1 6 6 C 1.52998 * 109.58465 * 57.58819 * 4 2 1 7 7 S 1.81738 * 108.79674 * 297.65034 * 4 2 1 8 8 O 1.42107 * 109.46915 * 189.42617 * 7 4 2 9 9 C 1.81739 * 102.30808 * 305.45869 * 7 4 2 10 10 C 1.53246 * 108.79470 * 54.54420 * 9 7 4 11 11 N 1.46370 * 109.48570 * 302.33971 * 10 9 7 12 12 S 1.65597 * 119.64731 * 245.06491 * 11 10 9 13 13 O 1.42100 * 104.27999 * 206.07484 * 12 11 10 14 14 O 1.42102 * 104.27814 * 333.93351 * 12 11 10 15 15 C 1.81404 * 104.45010 * 90.00428 * 12 11 10 16 16 C 1.53002 * 109.47163 * 179.97438 * 15 12 11 17 17 C 1.52995 * 109.46936 * 179.97438 * 16 15 12 18 18 C 1.50704 * 109.47245 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99552 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00053 * 180.02562 * 18 17 16 21 21 N 1.31507 * 120.00076 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99618 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47525 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47124 * 120.00269 * 22 20 18 25 25 H 1.48501 * 109.46830 * 239.99485 * 22 20 18 26 26 H 1.09008 * 109.47318 * 300.00837 * 1 2 3 27 27 H 1.09004 * 109.47078 * 60.00198 * 1 2 3 28 28 H 1.09000 * 109.47516 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47314 * 59.99343 * 6 4 2 30 30 H 1.08992 * 109.46897 * 179.97438 * 6 4 2 31 31 H 1.09000 * 109.46523 * 299.99623 * 6 4 2 32 32 H 1.09000 * 109.58873 * 294.74942 * 9 7 4 33 33 H 1.09000 * 109.58567 * 174.33283 * 9 7 4 34 34 H 1.09005 * 109.46655 * 62.34678 * 10 9 7 35 35 H 1.09004 * 109.46707 * 182.33578 * 10 9 7 36 36 H 1.08997 * 109.46850 * 299.99672 * 15 12 11 37 37 H 1.09002 * 109.47073 * 60.00008 * 15 12 11 38 38 H 1.08991 * 109.47399 * 299.99779 * 16 15 12 39 39 H 1.09002 * 109.47081 * 60.00060 * 16 15 12 40 40 H 1.09004 * 109.47475 * 300.00117 * 17 16 15 41 41 H 1.08994 * 109.47274 * 60.00234 * 17 16 15 42 42 H 0.97003 * 120.00273 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2514 5 1 3.1300 -0.6901 -1.2726 6 6 1.4830 -0.0385 -2.5015 7 16 1.4829 -2.4510 -1.1984 8 8 2.1242 -3.1874 -2.2309 9 6 2.1018 -3.0083 0.4170 10 6 1.5849 -2.0547 1.4995 11 7 2.0178 -0.6900 1.1952 12 16 3.0703 0.0819 2.2144 13 8 2.7995 1.4629 2.0176 14 8 2.8525 -0.5349 3.4759 15 6 4.7137 -0.3420 1.5738 16 6 5.7857 0.3206 2.4414 17 6 7.1717 -0.0375 1.9015 18 6 8.2278 0.6146 2.7563 19 1 7.9391 1.2231 3.6005 20 6 9.5623 0.4342 2.4607 21 7 9.9138 -0.3072 1.4330 22 14 10.8712 1.2420 3.5208 23 1 10.2196 2.0175 4.6067 24 1 11.7432 0.1961 4.1133 25 1 11.6914 2.1549 2.6847 26 1 -0.3634 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8105 1.0008 -2.5239 30 1 1.8477 -0.5533 -3.3903 31 1 0.3939 -0.0759 -2.4807 32 1 3.1918 -3.0004 0.4133 33 1 1.7425 -4.0177 0.6175 34 1 0.4959 -2.0928 1.5272 35 1 1.9837 -2.3548 2.4685 36 1 4.8446 -1.4238 1.5968 37 1 4.8064 0.0135 0.5476 38 1 5.6547 1.4023 2.4180 39 1 5.6931 -0.0346 3.4678 40 1 7.3026 -1.1194 1.9252 41 1 7.2646 0.3173 0.8751 42 1 10.8527 -0.4344 1.2251 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076857561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:40 Heat of formation + Delta-G solvation = -119.201024 kcal Electronic energy + Delta-G solvation = -24445.612603 eV Core-core repulsion = 20872.287042 eV Total energy + Delta-G solvation = -3573.325561 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.66151 -37.13970 -35.90575 -35.86255 -34.74244 -34.17691 -32.24141 -30.62186 -29.00935 -27.86414 -25.61293 -23.83194 -23.10761 -21.14818 -20.51872 -19.18916 -18.06871 -17.34252 -16.73924 -16.58952 -15.89055 -15.79399 -15.59537 -15.30177 -14.83896 -14.53403 -14.36535 -14.16549 -13.64547 -13.41655 -12.77803 -12.68459 -12.56537 -12.46707 -12.35092 -12.26226 -12.07906 -12.05478 -11.93753 -11.87592 -11.69838 -11.37595 -11.35286 -11.09580 -10.96915 -10.89354 -10.45527 -10.04514 -10.01725 -9.66124 -9.32986 -9.08039 -8.50318 -8.45013 -6.09126 -4.12793 0.28879 1.24855 2.23269 2.52073 3.26911 3.34431 3.39148 3.46925 3.85446 4.10116 4.20032 4.32619 4.39451 4.60568 4.68023 4.78360 4.89046 4.96674 5.00053 5.07259 5.13313 5.22753 5.27322 5.33481 5.43800 5.51858 5.57419 5.59309 5.69227 5.80518 5.85052 5.95120 6.17002 6.33742 6.36636 6.80395 7.51979 7.60832 7.88273 8.28171 8.93666 9.52340 11.02141 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.017673 B = 0.003499 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.981994 B = 7999.789650 C = 8638.186384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.168 3.832 3 H 0.115 0.885 4 C -0.425 4.425 5 H 0.099 0.901 6 C -0.128 4.128 7 S 1.242 4.758 8 O -0.851 6.851 9 C -0.466 4.466 10 C 0.137 3.863 11 N -1.006 6.006 12 S 2.595 3.405 13 O -0.955 6.955 14 O -0.955 6.955 15 C -0.613 4.613 16 C -0.105 4.105 17 C 0.030 3.970 18 C -0.527 4.527 19 H 0.059 0.941 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.895 3.105 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.126 0.874 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.372 -2.890 -5.009 26.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.061 3.939 3 H 0.133 0.867 4 C -0.544 4.544 5 H 0.117 0.883 6 C -0.186 4.186 7 S 1.440 4.560 8 O -0.846 6.846 9 C -0.605 4.605 10 C 0.011 3.989 11 N -0.842 5.842 12 S 2.692 3.308 13 O -0.945 6.945 14 O -0.945 6.945 15 C -0.744 4.744 16 C -0.144 4.144 17 C -0.008 4.008 18 C -0.565 4.565 19 H 0.077 0.923 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.723 3.277 23 H -0.195 1.195 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.145 0.855 34 H 0.112 0.888 35 H 0.126 0.874 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -26.006 -2.963 -5.048 26.657 hybrid contribution 3.779 0.035 0.077 3.780 sum -22.227 -2.929 -4.971 22.964 Atomic orbital electron populations 1.22252 0.93490 1.03075 1.03860 1.20612 0.95854 0.96678 0.80729 0.86716 1.27831 1.08085 1.17685 1.00808 0.88253 1.21493 1.01419 1.01387 0.94332 1.70471 1.17120 0.84718 0.83679 1.93122 1.77977 1.65177 1.48365 1.28088 1.09382 1.07166 1.15899 1.20984 1.01427 0.78613 0.97900 1.57946 1.61737 1.25139 1.39336 1.05591 0.76569 0.74266 0.74339 1.93562 1.83648 1.31476 1.85800 1.93564 1.84602 1.77456 1.38915 1.30654 1.20254 1.11395 1.12146 1.21497 0.96256 0.99249 0.97391 1.19067 0.87980 0.97204 0.96564 1.21275 0.91001 1.30941 1.13282 0.92261 1.25031 0.98833 0.95226 0.95296 1.69968 1.16981 1.38861 1.27582 0.86486 0.81561 0.79253 0.80448 1.19548 1.20898 1.20903 0.90876 0.90170 0.91372 0.90902 0.91898 0.90807 0.88674 0.85538 0.88763 0.87400 0.85670 0.85679 0.91512 0.91523 0.96214 0.96210 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 8.37 37.16 0.31 -0.50 16 2 C 0.17 1.37 2.68 -67.87 -0.18 1.19 16 3 H 0.12 1.05 6.75 -51.93 -0.35 0.70 16 4 C -0.42 -3.60 3.05 -26.61 -0.08 -3.69 16 5 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 6 C -0.13 -0.87 8.81 37.16 0.33 -0.54 16 7 S 1.24 10.11 11.71 -107.50 -1.26 8.85 16 8 O -0.85 -12.76 18.14 -35.23 -0.64 -13.40 16 9 C -0.47 -3.68 6.65 37.28 0.25 -3.43 16 10 C 0.14 1.03 5.78 -3.98 -0.02 1.01 16 11 N -1.01 -9.86 2.81 -107.21 -0.30 -10.16 16 12 S 2.59 36.44 5.40 -107.50 -0.58 35.86 16 13 O -0.95 -15.57 16.49 -57.54 -0.95 -16.52 16 14 O -0.96 -15.59 16.49 -57.54 -0.95 -16.54 16 15 C -0.61 -9.62 6.18 37.16 0.23 -9.39 16 16 C -0.10 -2.14 5.16 -26.73 -0.14 -2.28 16 17 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 18 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 22 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 27 H 0.08 0.24 6.40 -51.93 -0.33 -0.09 16 28 H 0.07 0.15 5.84 -51.93 -0.30 -0.15 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.28 6.40 -51.93 -0.33 -0.05 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.37 6.92 -51.93 -0.36 0.01 16 35 H 0.11 0.90 6.75 -51.93 -0.35 0.55 16 36 H 0.12 1.80 8.14 -51.93 -0.42 1.38 16 37 H 0.12 1.80 8.14 -51.92 -0.42 1.38 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 354.21 15.07 5.34 5.34 Total: -1.00 -39.90 354.21 -10.12 -50.03 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -6.64 Total: -3.22 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 0.14 Total: -30.73 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.44 Total: -36.39 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -2.54 Total: -46.46 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 46.55 SS G_CDS: -1.84 Total: 44.71 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -39.90 -10.12 -50.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076857561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.176 kcal (2) G-P(sol) polarization free energy of solvation -39.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds