Wall clock time and date at job start Fri Apr 10 2020 14:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46945 * 2 1 4 4 C 1.53244 * 109.46435 * 240.01253 * 2 1 3 5 5 H 1.09002 * 109.57506 * 177.86056 * 4 2 1 6 6 C 1.52998 * 109.58465 * 57.58819 * 4 2 1 7 7 S 1.81738 * 108.79674 * 297.65034 * 4 2 1 8 8 O 1.42107 * 109.46915 * 189.42617 * 7 4 2 9 9 C 1.81739 * 102.30808 * 305.45869 * 7 4 2 10 10 C 1.53246 * 108.79470 * 54.54420 * 9 7 4 11 11 N 1.46370 * 109.48570 * 302.33971 * 10 9 7 12 12 S 1.65597 * 119.64731 * 245.06491 * 11 10 9 13 13 O 1.42100 * 104.27999 * 206.07484 * 12 11 10 14 14 O 1.42102 * 104.27814 * 333.93351 * 12 11 10 15 15 C 1.81404 * 104.45010 * 90.00428 * 12 11 10 16 16 C 1.53002 * 109.47163 * 179.97438 * 15 12 11 17 17 C 1.52995 * 109.46936 * 179.97438 * 16 15 12 18 18 C 1.50704 * 109.47245 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99552 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00053 * 180.02562 * 18 17 16 21 21 N 1.31507 * 120.00076 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99618 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47525 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47124 * 120.00269 * 22 20 18 25 25 H 1.48501 * 109.46830 * 239.99485 * 22 20 18 26 26 H 1.09008 * 109.47318 * 300.00837 * 1 2 3 27 27 H 1.09004 * 109.47078 * 60.00198 * 1 2 3 28 28 H 1.09000 * 109.47516 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47314 * 59.99343 * 6 4 2 30 30 H 1.08992 * 109.46897 * 179.97438 * 6 4 2 31 31 H 1.09000 * 109.46523 * 299.99623 * 6 4 2 32 32 H 1.09000 * 109.58873 * 294.74942 * 9 7 4 33 33 H 1.09000 * 109.58567 * 174.33283 * 9 7 4 34 34 H 1.09005 * 109.46655 * 62.34678 * 10 9 7 35 35 H 1.09004 * 109.46707 * 182.33578 * 10 9 7 36 36 H 1.08997 * 109.46850 * 299.99672 * 15 12 11 37 37 H 1.09002 * 109.47073 * 60.00008 * 15 12 11 38 38 H 1.08991 * 109.47399 * 299.99779 * 16 15 12 39 39 H 1.09002 * 109.47081 * 60.00060 * 16 15 12 40 40 H 1.09004 * 109.47475 * 300.00117 * 17 16 15 41 41 H 1.08994 * 109.47274 * 60.00234 * 17 16 15 42 42 H 0.97003 * 120.00273 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2514 5 1 3.1300 -0.6901 -1.2726 6 6 1.4830 -0.0385 -2.5015 7 16 1.4829 -2.4510 -1.1984 8 8 2.1242 -3.1874 -2.2309 9 6 2.1018 -3.0083 0.4170 10 6 1.5849 -2.0547 1.4995 11 7 2.0178 -0.6900 1.1952 12 16 3.0703 0.0819 2.2144 13 8 2.7995 1.4629 2.0176 14 8 2.8525 -0.5349 3.4759 15 6 4.7137 -0.3420 1.5738 16 6 5.7857 0.3206 2.4414 17 6 7.1717 -0.0375 1.9015 18 6 8.2278 0.6146 2.7563 19 1 7.9391 1.2231 3.6005 20 6 9.5623 0.4342 2.4607 21 7 9.9138 -0.3072 1.4330 22 14 10.8712 1.2420 3.5208 23 1 10.2196 2.0175 4.6067 24 1 11.7432 0.1961 4.1133 25 1 11.6914 2.1549 2.6847 26 1 -0.3634 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8105 1.0008 -2.5239 30 1 1.8477 -0.5533 -3.3903 31 1 0.3939 -0.0759 -2.4807 32 1 3.1918 -3.0004 0.4133 33 1 1.7425 -4.0177 0.6175 34 1 0.4959 -2.0928 1.5272 35 1 1.9837 -2.3548 2.4685 36 1 4.8446 -1.4238 1.5968 37 1 4.8064 0.0135 0.5476 38 1 5.6547 1.4023 2.4180 39 1 5.6931 -0.0346 3.4678 40 1 7.3026 -1.1194 1.9252 41 1 7.2646 0.3173 0.8751 42 1 10.8527 -0.4344 1.2251 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076857561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:40 Heat of formation + Delta-G solvation = -150.629433 kcal Electronic energy + Delta-G solvation = -24446.975441 eV Core-core repulsion = 20872.287042 eV Total energy + Delta-G solvation = -3574.688399 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.37560 -38.36151 -37.12935 -36.86237 -36.58049 -34.84914 -34.26253 -31.31363 -29.83183 -29.48586 -26.22100 -25.71043 -23.86001 -22.54846 -21.61562 -20.14295 -19.14630 -18.68803 -18.09339 -17.57700 -17.25881 -16.60631 -16.58961 -16.46952 -16.16684 -15.75658 -15.62817 -14.95863 -14.60827 -14.33959 -14.22167 -14.03408 -13.68964 -13.52848 -13.32244 -13.25435 -13.16116 -13.10589 -12.99815 -12.95056 -12.84057 -12.69988 -12.60500 -12.39328 -12.22318 -11.93708 -11.88017 -11.79682 -11.46699 -11.16832 -10.83735 -10.66920 -10.15960 -9.29316 -8.30363 -6.43000 -0.86772 0.56292 1.35338 1.35431 1.49619 1.53843 1.55084 2.33897 2.64764 2.75242 3.02559 3.03587 3.42423 3.57535 3.68662 3.76964 3.96653 4.01016 4.18291 4.23393 4.31384 4.44407 4.49971 4.54666 4.61433 4.79476 4.80409 4.87944 4.94390 4.98380 5.03468 5.11696 5.18863 5.32973 5.34482 5.48624 5.57168 5.66155 5.69310 6.09468 6.72965 7.27441 8.81695 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.017673 B = 0.003499 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.981994 B = 7999.789650 C = 8638.186384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.162 3.838 3 H 0.104 0.896 4 C -0.428 4.428 5 H 0.071 0.929 6 C -0.131 4.131 7 S 1.302 4.698 8 O -0.922 6.922 9 C -0.469 4.469 10 C 0.127 3.873 11 N -0.996 5.996 12 S 2.626 3.374 13 O -0.975 6.975 14 O -0.974 6.974 15 C -0.626 4.626 16 C -0.103 4.103 17 C 0.030 3.970 18 C -0.552 4.552 19 H 0.064 0.936 20 C 0.000 4.000 21 N -0.933 5.933 22 Si 0.968 3.032 23 H -0.260 1.260 24 H -0.276 1.276 25 H -0.276 1.276 26 H 0.074 0.926 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.045 0.955 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.154 0.846 34 H 0.146 0.854 35 H 0.104 0.896 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.068 0.932 39 H 0.069 0.931 40 H -0.003 1.003 41 H -0.004 1.004 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.923 -2.566 -4.199 28.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.056 3.944 3 H 0.122 0.878 4 C -0.548 4.548 5 H 0.090 0.910 6 C -0.190 4.190 7 S 1.503 4.497 8 O -0.918 6.918 9 C -0.609 4.609 10 C 0.002 3.998 11 N -0.834 5.834 12 S 2.721 3.279 13 O -0.965 6.965 14 O -0.964 6.964 15 C -0.755 4.755 16 C -0.142 4.142 17 C -0.008 4.008 18 C -0.590 4.590 19 H 0.082 0.918 20 C -0.198 4.198 21 N -0.573 5.573 22 Si 0.792 3.208 23 H -0.184 1.184 24 H -0.201 1.201 25 H -0.201 1.201 26 H 0.093 0.907 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.130 0.870 32 H 0.089 0.911 33 H 0.172 0.828 34 H 0.164 0.836 35 H 0.122 0.878 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.015 0.985 41 H 0.015 0.985 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -28.534 -2.640 -4.245 28.969 hybrid contribution 4.521 -0.086 -0.195 4.526 sum -24.014 -2.726 -4.441 24.572 Atomic orbital electron populations 1.22393 0.89941 1.05554 1.05187 1.20887 0.98534 0.95727 0.79294 0.87792 1.27884 1.06626 1.18120 1.02211 0.91027 1.21602 1.03852 1.01002 0.92538 1.69491 1.15353 0.82988 0.81902 1.93002 1.79498 1.67462 1.51848 1.28151 1.07981 1.09141 1.15584 1.21406 1.04437 0.76693 0.97274 1.57725 1.59901 1.26279 1.39519 1.04491 0.75605 0.73695 0.74132 1.93531 1.83581 1.33139 1.86240 1.93535 1.84551 1.77824 1.40466 1.30747 1.21393 1.11559 1.11789 1.21284 0.94852 0.99891 0.98200 1.18962 0.91102 0.95436 0.95312 1.21755 0.92194 1.31267 1.13816 0.91773 1.26020 1.01417 0.95704 0.96618 1.70096 1.17729 1.40195 1.29319 0.85348 0.78316 0.78379 0.78741 1.18381 1.20120 1.20144 0.90731 0.87808 0.88351 0.90641 0.93567 0.86962 0.91140 0.82767 0.83598 0.87817 0.84912 0.85130 0.91291 0.91213 0.98475 0.98549 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 8.37 71.98 0.60 -0.31 16 2 C 0.16 2.29 2.68 45.09 0.12 2.41 16 3 H 0.10 1.76 6.75 -2.39 -0.02 1.74 16 4 C -0.43 -6.83 3.05 30.68 0.09 -6.74 16 5 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 6 C -0.13 -1.59 8.81 71.98 0.63 -0.96 16 7 S 1.30 19.09 11.71 -56.49 -0.66 18.43 16 8 O -0.92 -27.74 18.14 -148.98 -2.70 -30.44 16 9 C -0.47 -6.51 6.65 72.06 0.48 -6.03 16 10 C 0.13 1.53 5.78 86.49 0.50 2.03 16 11 N -1.00 -17.62 2.81 -493.09 -1.38 -19.00 16 12 S 2.63 71.99 5.40 -56.49 -0.31 71.69 16 13 O -0.97 -31.11 16.49 -127.65 -2.10 -33.21 16 14 O -0.97 -30.70 16.49 -127.65 -2.10 -32.80 16 15 C -0.63 -20.29 6.18 71.98 0.44 -19.85 16 16 C -0.10 -4.37 5.16 30.59 0.16 -4.21 16 17 C 0.03 1.63 4.97 29.85 0.15 1.77 16 18 C -0.55 -32.25 9.11 25.60 0.23 -32.01 16 19 H 0.06 3.58 7.74 -2.91 -0.02 3.56 16 20 C 0.00 0.02 5.46 84.66 0.46 0.49 16 21 N -0.93 -57.76 13.29 21.45 0.28 -57.47 16 22 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 23 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 27 H 0.10 0.12 6.40 -2.39 -0.02 0.10 16 28 H 0.10 -0.10 5.84 -2.39 -0.01 -0.11 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 0.46 6.40 -2.39 -0.02 0.44 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.15 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.15 0.35 6.92 -2.38 -0.02 0.34 16 35 H 0.10 1.47 6.75 -2.38 -0.02 1.45 16 36 H 0.13 4.00 8.14 -2.39 -0.02 3.98 16 37 H 0.13 3.99 8.14 -2.39 -0.02 3.97 16 38 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 39 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 40 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 41 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -89.94 354.21 -2.07 -92.02 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 1.00 Total: 7.24 kcal Atomic # 6 Polarization: -67.28 SS G_CDS: 3.88 Total: -63.41 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -1.10 Total: -76.47 kcal Atomic # 8 Polarization: -89.54 SS G_CDS: -6.91 Total: -96.45 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 91.08 SS G_CDS: -0.97 Total: 90.11 kcal Total: -89.94 -2.07 -92.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076857561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.612 kcal (2) G-P(sol) polarization free energy of solvation -89.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds