Wall clock time and date at job start Fri Apr 10 2020 14:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46786 * 2 1 4 4 C 1.52721 * 109.32965 * 240.26626 * 2 1 3 5 5 H 1.09002 * 109.46359 * 302.17983 * 4 2 1 6 6 C 1.52994 * 109.77035 * 62.49390 * 4 2 1 7 7 S 1.81736 * 108.84310 * 182.43064 * 4 2 1 8 8 O 1.42104 * 109.47005 * 298.38664 * 7 4 2 9 9 C 1.81745 * 102.30695 * 54.42245 * 7 4 2 10 10 C 1.53240 * 108.80074 * 305.46052 * 9 7 4 11 11 N 1.46376 * 109.46756 * 119.98693 * 2 1 3 12 12 S 1.65607 * 119.64877 * 5.09236 * 11 2 1 13 13 O 1.42100 * 104.27419 * 320.10829 * 12 11 2 14 14 O 1.42096 * 104.27715 * 192.24968 * 12 11 2 15 15 C 1.81404 * 104.44690 * 76.17731 * 12 11 2 16 16 C 1.53003 * 109.46723 * 180.02562 * 15 12 11 17 17 C 1.53003 * 109.46936 * 180.02562 * 16 15 12 18 18 C 1.50699 * 109.47047 * 180.02562 * 17 16 15 19 19 H 1.07993 * 120.00223 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99727 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00240 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99760 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46984 * 90.00024 * 22 20 18 24 24 H 1.48506 * 109.47027 * 209.99892 * 22 20 18 25 25 H 1.48496 * 109.47123 * 329.99779 * 22 20 18 26 26 H 1.09000 * 109.47122 * 309.64696 * 1 2 3 27 27 H 1.09000 * 109.47363 * 69.64194 * 1 2 3 28 28 H 1.08999 * 109.47595 * 189.64853 * 1 2 3 29 29 H 1.08996 * 109.47467 * 179.47727 * 6 4 2 30 30 H 1.08991 * 109.47659 * 299.48315 * 6 4 2 31 31 H 1.09006 * 109.47163 * 59.48225 * 6 4 2 32 32 H 1.09002 * 109.58187 * 185.66823 * 9 7 4 33 33 H 1.09002 * 109.58142 * 65.25506 * 9 7 4 34 34 H 1.09004 * 109.46732 * 297.65293 * 10 9 7 35 35 H 1.08995 * 109.46685 * 177.65867 * 10 9 7 36 36 H 1.08999 * 109.47039 * 300.00318 * 15 12 11 37 37 H 1.08998 * 109.46859 * 60.00474 * 15 12 11 38 38 H 1.09003 * 109.46987 * 300.00091 * 16 15 12 39 39 H 1.08997 * 109.47024 * 59.99987 * 16 15 12 40 40 H 1.08999 * 109.46814 * 300.00008 * 17 16 15 41 41 H 1.09004 * 109.46923 * 59.99606 * 17 16 15 42 42 H 0.97003 * 120.00415 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0355 -0.7148 -1.2514 5 1 1.6392 -1.7299 -1.2749 6 6 1.5793 0.0428 -2.4999 7 16 3.8513 -0.7707 -1.2023 8 8 4.3662 0.5538 -1.2018 9 6 4.1715 -1.5456 0.4102 10 6 3.4493 -0.7416 1.4966 11 7 2.0178 -0.6898 1.1953 12 16 0.9392 -1.4252 2.2143 13 8 -0.1598 -0.5261 2.2694 14 8 1.7015 -1.7226 3.3761 15 6 0.4707 -2.9512 1.3525 16 6 -0.5357 -3.7288 2.2031 17 6 -0.9305 -5.0161 1.4765 18 6 -1.9222 -5.7817 2.3140 19 1 -2.2389 -5.3896 3.2691 20 6 -2.4244 -6.9833 1.8613 21 7 -2.0383 -7.4611 0.6984 22 14 -3.6531 -7.9326 2.8997 23 1 -5.0317 -7.5077 2.5473 24 1 -3.5017 -9.3869 2.6398 25 1 -3.4027 -7.6581 4.3374 26 1 -0.3633 0.6557 0.7913 27 1 -0.3634 0.3575 -0.9635 28 1 -0.3634 -1.0131 0.1722 29 1 1.9504 -0.4661 -3.3895 30 1 0.4902 0.0752 -2.5276 31 1 1.9725 1.0591 -2.4722 32 1 5.2434 -1.5469 0.6085 33 1 3.7977 -2.5695 0.4042 34 1 3.8511 0.2712 1.5266 35 1 3.5999 -1.2210 2.4639 36 1 0.0187 -2.7021 0.3924 37 1 1.3578 -3.5629 1.1887 38 1 -0.0841 -3.9778 3.1634 39 1 -1.4227 -3.1168 2.3666 40 1 -1.3819 -4.7674 0.5161 41 1 -0.0432 -5.6279 1.3133 42 1 -2.3919 -8.3063 0.3797 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076857571.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:42 Heat of formation + Delta-G solvation = -104.989138 kcal Electronic energy + Delta-G solvation = -24731.145633 eV Core-core repulsion = 21158.436345 eV Total energy + Delta-G solvation = -3572.709288 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.62695 -37.23567 -35.90077 -35.83592 -34.79746 -34.18614 -32.25581 -30.85253 -28.59301 -27.86848 -25.34723 -23.93775 -22.97957 -21.50578 -20.40565 -18.95745 -17.99740 -17.36267 -16.98270 -16.62991 -16.11614 -15.84928 -15.38648 -15.18831 -14.75535 -14.49261 -14.29724 -14.12385 -13.40027 -13.31106 -12.91841 -12.72902 -12.66734 -12.46260 -12.42856 -12.27027 -12.17081 -11.99607 -11.87429 -11.63984 -11.49453 -11.27788 -11.24697 -10.94368 -10.85553 -10.52276 -10.45588 -10.03128 -10.00355 -9.71246 -9.36437 -9.11777 -8.45125 -8.38580 -6.10320 -4.13390 0.31811 1.31738 2.25690 2.53823 3.27417 3.33832 3.37814 3.52370 3.85750 4.17987 4.19799 4.32697 4.38972 4.63088 4.68300 4.80608 4.94297 4.96215 5.09560 5.11358 5.15819 5.26407 5.33935 5.41258 5.50672 5.55838 5.59001 5.66124 5.78612 5.87664 5.92943 6.17144 6.30860 6.37081 6.40692 6.79685 7.50773 7.60416 7.87402 8.27764 8.92573 9.51676 11.00806 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.019162 B = 0.003507 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.865198 B = 7981.830529 C = 8360.793276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.160 3.840 3 H 0.085 0.915 4 C -0.427 4.427 5 H 0.131 0.869 6 C -0.129 4.129 7 S 1.246 4.754 8 O -0.845 6.845 9 C -0.464 4.464 10 C 0.116 3.884 11 N -1.005 6.005 12 S 2.593 3.407 13 O -0.953 6.953 14 O -0.962 6.962 15 C -0.611 4.611 16 C -0.105 4.105 17 C 0.032 3.968 18 C -0.527 4.527 19 H 0.058 0.942 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.894 3.106 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.273 1.273 26 H 0.106 0.894 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.021 0.979 41 H 0.021 0.979 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.433 12.241 -7.907 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.053 3.947 3 H 0.103 0.897 4 C -0.546 4.546 5 H 0.149 0.851 6 C -0.188 4.188 7 S 1.443 4.557 8 O -0.841 6.841 9 C -0.603 4.603 10 C -0.010 4.010 11 N -0.841 5.841 12 S 2.691 3.309 13 O -0.943 6.943 14 O -0.952 6.952 15 C -0.743 4.743 16 C -0.145 4.145 17 C -0.006 4.006 18 C -0.566 4.566 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.534 5.534 22 Si 0.721 3.279 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.198 1.198 26 H 0.125 0.875 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.095 0.905 35 H 0.130 0.870 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.852 12.821 -7.837 19.773 hybrid contribution -1.385 -0.055 1.557 2.084 sum 11.467 12.766 -6.280 18.273 Atomic orbital electron populations 1.22884 0.92118 1.04688 1.05100 1.20681 0.96057 0.95860 0.82056 0.89701 1.27842 1.20237 1.06638 0.99904 0.85102 1.21508 1.02927 0.99916 0.94453 1.70464 0.86348 1.00084 0.98756 1.93106 1.71158 1.38163 1.81647 1.28054 1.07097 1.09242 1.15895 1.21191 0.78976 1.01091 0.99708 1.57899 1.17729 1.69187 1.39269 1.05663 0.73781 0.76940 0.74466 1.93620 1.53764 1.60701 1.86254 1.93526 1.70178 1.86013 1.45527 1.30723 1.10824 1.19096 1.13674 1.21511 0.95335 0.99683 0.97926 1.19055 0.96686 0.89355 0.95526 1.21241 1.25206 1.05244 1.04882 0.92419 1.25001 0.96684 0.97437 0.95122 1.69947 1.43941 1.20345 1.19129 0.86566 0.81510 0.79053 0.80755 1.20554 1.21126 1.19751 0.87523 0.90299 0.91993 0.91125 0.90734 0.92011 0.86018 0.85747 0.90462 0.87038 0.85088 0.85242 0.91639 0.91595 0.96088 0.96062 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.16 7.49 37.16 0.28 -1.88 16 2 C 0.16 1.73 2.82 -68.14 -0.19 1.54 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.43 -3.40 2.77 -26.88 -0.07 -3.47 16 5 H 0.13 0.81 8.14 -51.93 -0.42 0.39 16 6 C -0.13 -0.91 8.93 37.15 0.33 -0.58 16 7 S 1.25 9.14 13.09 -107.50 -1.41 7.74 16 8 O -0.85 -11.13 18.13 -35.23 -0.64 -11.77 16 9 C -0.46 -3.47 6.65 37.28 0.25 -3.22 16 10 C 0.12 1.26 6.27 -3.98 -0.02 1.23 16 11 N -1.01 -11.97 3.02 -107.49 -0.32 -12.30 16 12 S 2.59 38.51 4.80 -107.50 -0.52 37.99 16 13 O -0.95 -16.18 13.64 -57.54 -0.78 -16.97 16 14 O -0.96 -16.87 16.17 -57.54 -0.93 -17.80 16 15 C -0.61 -8.88 5.84 37.16 0.22 -8.66 16 16 C -0.11 -2.05 5.16 -26.73 -0.14 -2.19 16 17 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 18 C -0.53 -14.50 9.11 -34.44 -0.31 -14.81 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 22 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H 0.11 1.42 6.25 -51.93 -0.32 1.10 16 27 H 0.08 0.72 6.07 -51.93 -0.32 0.40 16 28 H 0.06 0.72 4.36 -51.93 -0.23 0.50 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.50 6.33 -51.93 -0.33 0.17 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.12 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.11 1.26 6.45 -51.93 -0.34 0.92 16 36 H 0.13 1.65 6.27 -51.92 -0.33 1.32 16 37 H 0.13 1.60 8.14 -51.93 -0.42 1.17 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 LS Contribution 347.95 15.07 5.24 5.24 Total: -1.00 -37.58 347.95 -10.02 -47.60 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.47 Total: -0.95 kcal Atomic # 6 Polarization: -29.95 SS G_CDS: 0.10 Total: -29.85 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.41 Total: -37.37 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -2.35 Total: -46.54 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 47.65 SS G_CDS: -1.92 Total: 45.73 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.58 -10.02 -47.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076857571.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.392 kcal (2) G-P(sol) polarization free energy of solvation -37.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds