Wall clock time and date at job start Fri Apr 10 2020 14:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.64440 * 2 1 4 4 C 1.54168 * 109.64591 * 120.43277 * 2 1 3 5 5 S 1.82917 * 105.08490 * 147.62758 * 4 2 1 6 6 O 1.42104 * 109.35201 * 244.47403 * 5 4 2 7 7 O 1.42103 * 109.34988 * 111.27892 * 5 4 2 8 8 C 1.83283 * 97.02029 * 357.87545 * 5 4 2 9 9 C 1.53880 * 109.53751 * 239.63931 * 2 1 3 10 10 H 1.09000 * 110.02798 * 73.73967 * 9 2 1 11 11 N 1.46501 * 110.02708 * 312.32159 * 9 2 1 12 12 C 1.34779 * 119.99669 * 156.35062 * 11 9 2 13 13 O 1.21582 * 120.00233 * 0.02562 * 12 11 9 14 14 C 1.47645 * 119.99713 * 180.02562 * 12 11 9 15 15 C 1.40008 * 119.89511 * 359.73123 * 14 12 11 16 16 C 1.36325 * 120.10456 * 179.71662 * 15 14 12 17 17 C 1.40891 * 119.88986 * 0.58171 * 16 15 14 18 18 C 1.41104 * 120.09996 * 179.67642 * 17 16 15 19 19 H 1.08000 * 119.99964 * 155.08007 * 18 17 16 20 20 C 1.40224 * 120.00456 * 335.07599 * 18 17 16 21 21 N 1.30650 * 119.99929 * 342.21176 * 20 18 17 22 22 Si 1.86798 * 120.00409 * 162.20496 * 20 18 17 23 23 H 1.48505 * 109.46653 * 94.66484 * 22 20 18 24 24 H 1.48502 * 109.47617 * 214.66247 * 22 20 18 25 25 H 1.48503 * 109.47204 * 334.66947 * 22 20 18 26 26 C 1.40879 * 119.79275 * 359.69063 * 17 16 15 27 27 C 1.36321 * 119.89499 * 0.02562 * 26 17 16 28 28 H 1.09003 * 109.47268 * 301.02377 * 1 2 3 29 29 H 1.09008 * 109.47156 * 61.01978 * 1 2 3 30 30 H 1.08999 * 109.47402 * 181.02254 * 1 2 3 31 31 H 1.09004 * 110.31650 * 28.72566 * 4 2 1 32 32 H 1.09005 * 110.40223 * 266.57485 * 4 2 1 33 33 H 1.09001 * 110.78648 * 95.05415 * 8 5 4 34 34 H 1.09000 * 110.78760 * 218.51962 * 8 5 4 35 35 H 0.96999 * 120.00105 * 336.36037 * 11 9 2 36 36 H 1.08000 * 119.95134 * 359.97438 * 15 14 12 37 37 H 1.08001 * 120.05525 * 180.25051 * 16 15 14 38 38 H 0.96994 * 120.00550 * 179.97438 * 21 20 18 39 39 H 1.08003 * 120.05410 * 179.97438 * 26 17 16 40 40 H 1.08000 * 119.94613 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8964 1.0265 0.0000 4 6 2.0483 -0.7354 1.2519 5 16 3.6132 -1.5239 0.7271 6 8 3.4739 -2.9365 0.7927 7 8 4.7032 -0.8869 1.3794 8 6 3.5570 -0.9887 -1.0250 9 6 2.0446 -0.7330 -1.2513 10 1 1.8992 -0.1110 -2.1345 11 7 1.3390 -2.0068 -1.4123 12 6 1.2565 -2.5824 -2.6282 13 8 1.7680 -2.0448 -3.5913 14 6 0.5449 -3.8658 -2.7906 15 6 -0.0385 -4.4857 -1.6791 16 6 -0.7015 -5.6679 -1.8251 17 6 -0.7885 -6.2719 -3.0950 18 6 -1.4678 -7.4989 -3.2500 19 1 -1.8872 -7.7666 -4.2086 20 6 -1.5983 -8.3708 -2.1596 21 7 -0.8209 -8.2354 -1.1183 22 14 -2.8838 -9.7256 -2.1956 23 1 -2.2631 -10.9839 -2.6823 24 1 -3.4203 -9.9356 -0.8269 25 1 -3.9897 -9.3347 -3.1063 26 6 -0.1949 -5.6470 -4.2095 27 6 0.4610 -4.4621 -4.0546 28 1 -0.3634 0.5297 0.8807 29 1 -0.3634 0.4979 -0.8990 30 1 -0.3634 -1.0275 0.0183 31 1 1.3313 -1.4923 1.5702 32 1 2.2335 -0.0270 2.0594 33 1 4.1300 -0.0726 -1.1682 34 1 3.9184 -1.7793 -1.6827 35 1 0.9311 -2.4358 -0.6439 36 1 0.0333 -4.0246 -0.7051 37 1 -1.1547 -6.1434 -0.9678 38 1 -0.9114 -8.8382 -0.3638 39 1 -0.2587 -6.1065 -5.1848 40 1 0.9167 -3.9826 -4.9083 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288879737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:49 Heat of formation + Delta-G solvation = -93.732438 kcal Electronic energy + Delta-G solvation = -25192.721480 eV Core-core repulsion = 21485.056369 eV Total energy + Delta-G solvation = -3707.665112 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.76349 -37.77961 -37.07770 -36.74088 -36.04436 -33.90736 -32.92697 -30.85602 -29.74670 -29.46021 -27.94498 -26.01942 -24.09348 -22.22366 -21.04881 -20.37621 -19.91771 -18.92441 -17.56663 -17.32452 -16.90625 -16.36531 -15.85112 -15.49573 -15.22334 -14.85926 -14.55394 -14.12339 -14.00457 -13.70455 -13.30723 -13.09810 -12.97844 -12.78250 -12.69026 -12.22695 -12.11890 -12.08438 -12.03544 -11.98184 -11.49087 -11.44467 -11.36211 -11.27631 -11.00252 -10.72086 -10.67585 -10.42231 -10.09961 -9.59130 -9.37575 -9.11314 -8.93372 -7.74873 -7.58111 -7.05811 -4.63185 -0.07278 2.16224 2.40256 2.88165 2.93458 2.99306 3.01694 3.38331 3.45457 3.71303 3.76377 3.88024 4.11262 4.21467 4.36799 4.53881 4.57502 4.95318 5.09668 5.14913 5.27453 5.39525 5.54216 5.58680 5.62914 5.70553 5.94264 5.99858 6.04283 6.27939 6.66514 6.74758 6.79954 6.99728 7.09897 7.40060 7.58043 7.73641 7.83200 8.02938 8.06501 8.37098 8.60148 8.72282 8.90967 9.86028 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.018305 B = 0.003340 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.269519 B = 8381.997886 C = 8940.348745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.105 0.895 4 C -0.598 4.598 5 S 2.379 3.621 6 O -0.923 6.923 7 O -0.946 6.946 8 C -0.597 4.597 9 C 0.154 3.846 10 H 0.120 0.880 11 N -0.742 5.742 12 C 0.578 3.422 13 O -0.569 6.569 14 C -0.289 4.289 15 C -0.059 4.059 16 C -0.178 4.178 17 C 0.130 3.870 18 C -0.441 4.441 19 H 0.085 0.915 20 C 0.074 3.926 21 N -0.768 5.768 22 Si 0.913 3.087 23 H -0.267 1.267 24 H -0.272 1.272 25 H -0.257 1.257 26 C -0.239 4.239 27 C -0.020 4.020 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.401 0.599 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.288 0.712 39 H 0.098 0.902 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.239 12.800 6.183 14.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.124 0.876 4 C -0.727 4.727 5 S 2.562 3.438 6 O -0.920 6.920 7 O -0.943 6.943 8 C -0.729 4.729 9 C 0.046 3.954 10 H 0.138 0.862 11 N -0.397 5.397 12 C 0.374 3.626 13 O -0.451 6.451 14 C -0.293 4.293 15 C -0.078 4.078 16 C -0.197 4.197 17 C 0.127 3.873 18 C -0.468 4.468 19 H 0.103 0.897 20 C -0.148 4.148 21 N -0.391 5.391 22 Si 0.736 3.264 23 H -0.192 1.192 24 H -0.197 1.197 25 H -0.181 1.181 26 C -0.259 4.259 27 C -0.039 4.039 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.238 0.762 36 H 0.106 0.894 37 H 0.138 0.862 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.335 12.508 6.258 14.180 hybrid contribution -1.118 -0.453 0.161 1.217 sum 1.217 12.056 6.419 13.712 Atomic orbital electron populations 1.21801 0.92319 1.03328 1.02627 1.21822 0.99220 1.00178 0.89620 0.87650 1.30707 1.21755 1.13193 1.07042 1.09367 0.77979 0.76693 0.79752 1.93686 1.86272 1.26466 1.85539 1.93595 1.49874 1.77800 1.73048 1.31107 1.04875 1.13384 1.23493 1.21363 0.86587 0.87603 0.99862 0.86228 1.46103 1.58842 1.22815 1.11929 1.18617 0.78088 0.84827 0.81096 1.90639 1.49624 1.65585 1.39240 1.18810 1.16580 0.98412 0.95498 1.20458 0.96685 0.95631 0.95062 1.20975 1.04875 0.95295 0.98583 1.17790 0.86812 0.91410 0.91334 1.19868 1.29012 1.00851 0.97075 0.89665 1.26115 0.95208 0.99088 0.94359 1.69746 1.30014 1.33696 1.05612 0.86211 0.81012 0.80133 0.79026 1.19201 1.19705 1.18073 1.20706 1.07658 0.98894 0.98604 1.20348 0.94863 0.93815 0.94886 0.91803 0.91452 0.91507 0.84236 0.84121 0.83910 0.83747 0.76195 0.89355 0.86193 0.90111 0.88368 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.75 37.16 0.33 -0.80 16 2 C -0.09 -0.67 2.93 -89.55 -0.26 -0.94 16 3 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.60 -4.49 6.42 37.77 0.24 -4.25 16 5 S 2.38 26.72 5.99 -107.50 -0.64 26.08 16 6 O -0.92 -14.63 18.15 -57.71 -1.05 -15.68 16 7 O -0.95 -13.01 18.15 -57.71 -1.05 -14.06 16 8 C -0.60 -6.31 6.96 38.24 0.27 -6.04 16 9 C 0.15 1.71 2.59 -66.39 -0.17 1.54 16 10 H 0.12 1.39 7.61 -51.93 -0.40 0.99 16 11 N -0.74 -10.97 4.19 -53.31 -0.22 -11.19 16 12 C 0.58 11.39 7.76 -12.42 -0.10 11.29 16 13 O -0.57 -12.42 16.00 5.29 0.08 -12.33 16 14 C -0.29 -6.38 5.89 -104.73 -0.62 -7.00 16 15 C -0.06 -1.29 9.47 -39.61 -0.38 -1.66 16 16 C -0.18 -4.31 8.63 -39.27 -0.34 -4.64 16 17 C 0.13 3.26 5.57 -106.81 -0.60 2.67 16 18 C -0.44 -10.82 9.04 -37.75 -0.34 -11.16 16 19 H 0.09 1.99 7.91 -52.49 -0.42 1.58 16 20 C 0.07 1.71 5.13 -17.31 -0.09 1.62 16 21 N -0.77 -18.35 10.97 55.56 0.61 -17.74 16 22 Si 0.91 17.05 29.60 -169.99 -5.03 12.02 16 23 H -0.27 -4.96 7.11 56.52 0.40 -4.55 16 24 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 25 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 26 C -0.24 -5.69 9.73 -39.27 -0.38 -6.07 16 27 C -0.02 -0.46 9.52 -39.61 -0.38 -0.83 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 30 H 0.07 0.59 6.78 -51.93 -0.35 0.24 16 31 H 0.14 0.97 7.87 -51.93 -0.41 0.56 16 32 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.14 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.14 1.83 8.14 -51.93 -0.42 1.40 16 35 H 0.40 5.44 5.36 -40.82 -0.22 5.22 16 36 H 0.09 1.63 6.37 -52.49 -0.33 1.29 16 37 H 0.12 2.94 6.17 -52.49 -0.32 2.62 16 38 H 0.29 6.18 8.29 -40.82 -0.34 5.84 16 39 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 40 H 0.10 2.22 7.63 -52.49 -0.40 1.82 16 LS Contribution 343.66 15.07 5.18 5.18 Total: -1.00 -33.14 343.66 -9.87 -43.01 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -4.94 Total: 11.00 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: -2.81 Total: -26.28 kcal Atomic # 7 Polarization: -29.32 SS G_CDS: 0.39 Total: -28.93 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -2.01 Total: -42.07 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.02 kcal Atomic # 16 Polarization: 26.72 SS G_CDS: -0.64 Total: 26.08 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.14 -9.87 -43.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288879737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.718 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds