Wall clock time and date at job start Fri Apr 10 2020 14:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.64440 * 2 1 4 4 C 1.54168 * 109.64591 * 120.43277 * 2 1 3 5 5 S 1.82917 * 105.08490 * 147.62758 * 4 2 1 6 6 O 1.42104 * 109.35201 * 244.47403 * 5 4 2 7 7 O 1.42103 * 109.34988 * 111.27892 * 5 4 2 8 8 C 1.83283 * 97.02029 * 357.87545 * 5 4 2 9 9 C 1.53880 * 109.53751 * 239.63931 * 2 1 3 10 10 H 1.09000 * 110.02798 * 73.73967 * 9 2 1 11 11 N 1.46501 * 110.02708 * 312.32159 * 9 2 1 12 12 C 1.34779 * 119.99669 * 156.35062 * 11 9 2 13 13 O 1.21582 * 120.00233 * 0.02562 * 12 11 9 14 14 C 1.47645 * 119.99713 * 180.02562 * 12 11 9 15 15 C 1.40008 * 119.89511 * 359.73123 * 14 12 11 16 16 C 1.36325 * 120.10456 * 179.71662 * 15 14 12 17 17 C 1.40891 * 119.88986 * 0.58171 * 16 15 14 18 18 C 1.41104 * 120.09996 * 179.67642 * 17 16 15 19 19 H 1.08000 * 119.99964 * 155.08007 * 18 17 16 20 20 C 1.40224 * 120.00456 * 335.07599 * 18 17 16 21 21 N 1.30650 * 119.99929 * 342.21176 * 20 18 17 22 22 Si 1.86798 * 120.00409 * 162.20496 * 20 18 17 23 23 H 1.48505 * 109.46653 * 94.66484 * 22 20 18 24 24 H 1.48502 * 109.47617 * 214.66247 * 22 20 18 25 25 H 1.48503 * 109.47204 * 334.66947 * 22 20 18 26 26 C 1.40879 * 119.79275 * 359.69063 * 17 16 15 27 27 C 1.36321 * 119.89499 * 0.02562 * 26 17 16 28 28 H 1.09003 * 109.47268 * 301.02377 * 1 2 3 29 29 H 1.09008 * 109.47156 * 61.01978 * 1 2 3 30 30 H 1.08999 * 109.47402 * 181.02254 * 1 2 3 31 31 H 1.09004 * 110.31650 * 28.72566 * 4 2 1 32 32 H 1.09005 * 110.40223 * 266.57485 * 4 2 1 33 33 H 1.09001 * 110.78648 * 95.05415 * 8 5 4 34 34 H 1.09000 * 110.78760 * 218.51962 * 8 5 4 35 35 H 0.96999 * 120.00105 * 336.36037 * 11 9 2 36 36 H 1.08000 * 119.95134 * 359.97438 * 15 14 12 37 37 H 1.08001 * 120.05525 * 180.25051 * 16 15 14 38 38 H 0.96994 * 120.00550 * 179.97438 * 21 20 18 39 39 H 1.08003 * 120.05410 * 179.97438 * 26 17 16 40 40 H 1.08000 * 119.94613 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8964 1.0265 0.0000 4 6 2.0483 -0.7354 1.2519 5 16 3.6132 -1.5239 0.7271 6 8 3.4739 -2.9365 0.7927 7 8 4.7032 -0.8869 1.3794 8 6 3.5570 -0.9887 -1.0250 9 6 2.0446 -0.7330 -1.2513 10 1 1.8992 -0.1110 -2.1345 11 7 1.3390 -2.0068 -1.4123 12 6 1.2565 -2.5824 -2.6282 13 8 1.7680 -2.0448 -3.5913 14 6 0.5449 -3.8658 -2.7906 15 6 -0.0385 -4.4857 -1.6791 16 6 -0.7015 -5.6679 -1.8251 17 6 -0.7885 -6.2719 -3.0950 18 6 -1.4678 -7.4989 -3.2500 19 1 -1.8872 -7.7666 -4.2086 20 6 -1.5983 -8.3708 -2.1596 21 7 -0.8209 -8.2354 -1.1183 22 14 -2.8838 -9.7256 -2.1956 23 1 -2.2631 -10.9839 -2.6823 24 1 -3.4203 -9.9356 -0.8269 25 1 -3.9897 -9.3347 -3.1063 26 6 -0.1949 -5.6470 -4.2095 27 6 0.4610 -4.4621 -4.0546 28 1 -0.3634 0.5297 0.8807 29 1 -0.3634 0.4979 -0.8990 30 1 -0.3634 -1.0275 0.0183 31 1 1.3313 -1.4923 1.5702 32 1 2.2335 -0.0270 2.0594 33 1 4.1300 -0.0726 -1.1682 34 1 3.9184 -1.7793 -1.6827 35 1 0.9311 -2.4358 -0.6439 36 1 0.0333 -4.0246 -0.7051 37 1 -1.1547 -6.1434 -0.9678 38 1 -0.9114 -8.8382 -0.3638 39 1 -0.2587 -6.1065 -5.1848 40 1 0.9167 -3.9826 -4.9083 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288879737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:48 Heat of formation + Delta-G solvation = -117.184501 kcal Electronic energy + Delta-G solvation = -25193.738438 eV Core-core repulsion = 21485.056369 eV Total energy + Delta-G solvation = -3708.682070 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.11992 -39.26271 -38.18490 -38.04234 -37.05455 -35.67220 -34.13616 -32.18450 -31.31226 -31.02944 -28.64840 -27.70221 -25.10437 -23.70605 -22.80444 -21.62840 -21.12929 -19.84530 -19.36510 -18.70118 -17.96300 -17.40004 -17.13458 -16.86012 -16.34098 -15.99943 -15.76184 -15.55558 -15.35329 -14.97910 -14.80854 -14.50430 -14.01135 -13.87375 -13.74598 -13.66454 -13.57597 -13.20952 -13.18653 -13.08983 -12.84097 -12.77451 -12.65242 -12.36044 -12.18419 -12.03766 -11.78373 -11.60237 -11.37377 -11.26855 -11.11762 -10.74017 -10.22931 -9.57183 -9.41436 -8.79282 -6.48572 -0.93322 0.43130 1.15617 1.38407 1.42044 1.55153 1.57314 2.08723 2.17202 2.22859 2.60719 2.78088 3.04017 3.34515 3.44014 3.57163 3.70683 3.94977 4.12290 4.22075 4.31599 4.44684 4.48397 4.57142 4.60852 4.75124 4.80285 4.92631 5.02738 5.06197 5.09827 5.15832 5.29907 5.41464 5.46220 5.58815 5.81470 5.93083 5.99586 6.22949 6.53801 6.58746 6.77161 6.88935 7.37509 8.15992 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.018305 B = 0.003340 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.269519 B = 8381.997886 C = 8940.348745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 H 0.148 0.852 4 C -0.570 4.570 5 S 2.373 3.627 6 O -0.980 6.980 7 O -0.976 6.976 8 C -0.593 4.593 9 C 0.143 3.857 10 H 0.121 0.879 11 N -0.728 5.728 12 C 0.580 3.420 13 O -0.593 6.593 14 C -0.297 4.297 15 C -0.054 4.054 16 C -0.199 4.199 17 C 0.102 3.898 18 C -0.474 4.474 19 H 0.086 0.914 20 C 0.038 3.962 21 N -0.799 5.799 22 Si 0.988 3.012 23 H -0.262 1.262 24 H -0.262 1.262 25 H -0.255 1.255 26 C -0.254 4.254 27 C -0.032 4.032 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.151 0.849 32 H 0.179 0.821 33 H 0.178 0.822 34 H 0.119 0.881 35 H 0.408 0.592 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.297 0.703 39 H 0.104 0.896 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.332 14.754 7.788 16.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 H 0.165 0.835 4 C -0.702 4.702 5 S 2.563 3.437 6 O -0.978 6.978 7 O -0.973 6.973 8 C -0.725 4.725 9 C 0.036 3.964 10 H 0.138 0.862 11 N -0.382 5.382 12 C 0.374 3.626 13 O -0.476 6.476 14 C -0.302 4.302 15 C -0.073 4.073 16 C -0.218 4.218 17 C 0.099 3.901 18 C -0.501 4.501 19 H 0.104 0.896 20 C -0.181 4.181 21 N -0.423 5.423 22 Si 0.807 3.193 23 H -0.187 1.187 24 H -0.186 1.186 25 H -0.179 1.179 26 C -0.273 4.273 27 C -0.051 4.051 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.169 0.831 32 H 0.196 0.804 33 H 0.195 0.805 34 H 0.138 0.862 35 H 0.246 0.754 36 H 0.139 0.861 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.482 14.468 7.891 16.546 hybrid contribution -0.780 -0.888 -0.336 1.229 sum 0.702 13.580 7.555 15.555 Atomic orbital electron populations 1.21862 0.92081 1.02854 1.03771 1.21926 0.99210 1.01556 0.87182 0.83471 1.30561 1.17808 1.13732 1.08135 1.09239 0.79209 0.75593 0.79705 1.93615 1.87467 1.30340 1.86334 1.93552 1.52459 1.77700 1.73574 1.31063 1.04944 1.14216 1.22267 1.21779 0.86597 0.85850 1.02137 0.86153 1.45953 1.58034 1.23855 1.10312 1.18275 0.77784 0.84181 0.82385 1.90621 1.50552 1.66002 1.40463 1.19199 1.16156 0.99600 0.95220 1.20728 0.95250 0.94802 0.96476 1.21013 1.06279 0.96392 0.98162 1.18136 0.87606 0.92259 0.92105 1.20130 1.30351 1.01537 0.98093 0.89586 1.26944 0.96672 1.01065 0.93426 1.69775 1.31166 1.34977 1.06368 0.85106 0.78009 0.76801 0.79378 1.18700 1.18582 1.17895 1.20856 1.08164 0.99464 0.98811 1.20523 0.94939 0.93837 0.95782 0.89362 0.91692 0.92890 0.83139 0.80373 0.80463 0.86227 0.75429 0.86116 0.86972 0.89188 0.87809 0.87658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.75 71.98 0.63 -1.07 16 2 C -0.08 -0.84 2.93 -10.10 -0.03 -0.87 16 3 H 0.15 0.52 8.14 -2.39 -0.02 0.50 16 4 C -0.57 -6.10 6.42 72.38 0.46 -5.64 16 5 S 2.37 49.85 5.99 -56.49 -0.34 49.52 16 6 O -0.98 -31.34 18.15 -127.49 -2.31 -33.65 16 7 O -0.98 -25.53 18.15 -127.49 -2.31 -27.84 16 8 C -0.59 -11.51 6.96 72.68 0.51 -11.00 16 9 C 0.14 2.81 2.59 45.99 0.12 2.93 16 10 H 0.12 2.47 7.61 -2.39 -0.02 2.45 16 11 N -0.73 -20.46 4.19 -440.85 -1.85 -22.31 16 12 C 0.58 22.65 7.76 86.73 0.67 23.32 16 13 O -0.59 -25.77 16.00 -3.97 -0.06 -25.83 16 14 C -0.30 -13.29 5.89 -19.93 -0.12 -13.41 16 15 C -0.05 -2.35 9.47 22.25 0.21 -2.14 16 16 C -0.20 -9.89 8.63 22.47 0.19 -9.69 16 17 C 0.10 5.32 5.57 -21.28 -0.12 5.20 16 18 C -0.47 -24.00 9.04 23.46 0.21 -23.79 16 19 H 0.09 4.16 7.91 -2.91 -0.02 4.14 16 20 C 0.04 1.77 5.13 85.35 0.44 2.21 16 21 N -0.80 -38.83 10.97 21.87 0.24 -38.59 16 22 Si 0.99 34.86 29.60 68.60 2.03 36.89 16 23 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 24 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 25 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 26 C -0.25 -12.53 9.73 22.47 0.22 -12.31 16 27 C -0.03 -1.50 9.52 22.25 0.21 -1.29 16 28 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.05 0.77 6.78 -2.39 -0.02 0.75 16 31 H 0.15 1.46 7.87 -2.39 -0.02 1.45 16 32 H 0.18 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.18 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 35 H 0.41 10.34 5.36 -92.71 -0.50 9.85 16 36 H 0.12 4.34 6.37 -2.91 -0.02 4.32 16 37 H 0.11 5.66 6.17 -2.91 -0.02 5.64 16 38 H 0.30 12.84 8.29 -92.71 -0.77 12.07 16 39 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 40 H 0.11 4.78 7.63 -2.91 -0.02 4.76 16 Total: -1.00 -75.40 343.66 -0.41 -75.82 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: 0.58 Total: 33.55 kcal Atomic # 6 Polarization: -51.16 SS G_CDS: 3.61 Total: -47.55 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -1.61 Total: -60.90 kcal Atomic # 8 Polarization: -82.64 SS G_CDS: -4.69 Total: -87.33 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 2.03 Total: 36.89 kcal Atomic # 16 Polarization: 49.85 SS G_CDS: -0.34 Total: 49.52 kcal Total: -75.40 -0.41 -75.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288879737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.369 kcal (2) G-P(sol) polarization free energy of solvation -75.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds