Wall clock time and date at job start Fri Apr 10 2020 14:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47100 * 2 1 4 4 C 1.52999 * 109.46862 * 239.99787 * 2 1 3 5 5 S 1.81398 * 109.46942 * 179.97438 * 4 2 1 6 6 C 1.81402 * 103.00023 * 180.02562 * 5 4 2 7 7 O 1.42095 * 109.47381 * 296.39178 * 5 4 2 8 8 N 1.46500 * 109.46813 * 120.00227 * 2 1 3 9 9 C 1.46498 * 120.00000 * 60.00098 * 8 2 1 10 10 S 1.65597 * 120.00157 * 239.99625 * 8 2 1 11 11 O 1.42094 * 104.27989 * 153.92979 * 10 8 2 12 12 O 1.42098 * 104.27500 * 26.07267 * 10 8 2 13 13 C 1.81402 * 104.44961 * 270.00405 * 10 8 2 14 14 C 1.52998 * 109.47137 * 189.64347 * 13 10 8 15 15 C 1.50700 * 115.55017 * 304.63753 * 14 13 10 16 16 H 1.08004 * 120.00112 * 114.36148 * 15 14 13 17 17 C 1.37879 * 119.99968 * 294.08536 * 15 14 13 18 18 N 1.31511 * 119.99977 * 173.58398 * 17 15 14 19 19 Si 1.86799 * 119.99766 * 353.57913 * 17 15 14 20 20 H 1.48501 * 109.47096 * 95.96703 * 19 17 15 21 21 H 1.48499 * 109.47104 * 215.96544 * 19 17 15 22 22 H 1.48494 * 109.47301 * 335.96745 * 19 17 15 23 23 C 1.52999 * 117.49899 * 90.30247 * 14 13 10 24 24 C 1.52993 * 117.50036 * 158.96569 * 14 13 10 25 25 H 1.09005 * 109.47248 * 59.99571 * 1 2 3 26 26 H 1.08994 * 109.47100 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47031 * 299.99981 * 1 2 3 28 28 H 1.08990 * 109.47790 * 300.00369 * 4 2 1 29 29 H 1.09004 * 109.46528 * 60.00820 * 4 2 1 30 30 H 1.09003 * 109.46936 * 60.00366 * 6 5 4 31 31 H 1.08996 * 109.46948 * 180.02562 * 6 5 4 32 32 H 1.08997 * 109.47453 * 300.00754 * 6 5 4 33 33 H 1.08999 * 109.47155 * 269.99251 * 9 8 2 34 34 H 1.08993 * 109.47496 * 29.99518 * 9 8 2 35 35 H 1.09004 * 109.47173 * 150.00234 * 9 8 2 36 36 H 1.08996 * 109.47336 * 69.64435 * 13 10 8 37 37 H 1.08998 * 109.47084 * 309.64542 * 13 10 8 38 38 H 0.97003 * 119.99933 * 179.97438 * 18 17 15 39 39 H 1.08996 * 117.50112 * 215.00030 * 23 14 13 40 40 H 1.08997 * 117.49908 * 0.02957 * 23 14 13 41 41 H 1.08995 * 117.50175 * 359.97438 * 24 14 13 42 42 H 1.09003 * 117.49936 * 144.97273 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 3.8539 -0.7207 -1.2496 6 6 4.2620 -1.6039 -2.7807 7 8 4.3272 0.6165 -1.3343 8 7 2.0183 -0.6907 1.1962 9 6 1.6643 -2.0932 1.4279 10 16 2.9704 0.1140 2.2863 11 8 2.7432 -0.5614 3.5156 12 8 2.6122 1.4794 2.1234 13 6 4.6649 -0.1732 1.7059 14 6 5.6561 0.3183 2.7626 15 6 5.4963 1.7561 3.1848 16 1 5.1983 1.9922 4.1957 17 6 5.7361 2.7704 2.2821 18 7 5.4762 4.0173 2.6097 19 14 6.4303 2.3734 0.5939 20 1 5.3196 2.2712 -0.3865 21 1 7.3620 3.4515 0.1758 22 1 7.1611 1.0820 0.6504 23 6 6.1098 -0.6838 3.8260 24 6 7.0752 -0.2517 2.7194 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6766 -1.7489 -1.2493 29 1 1.6767 -0.2073 -2.1392 30 1 3.8427 -1.0678 -3.6321 31 1 5.3450 -1.6653 -2.8870 32 1 3.8434 -2.6095 -2.7427 33 1 0.7375 -2.1444 1.9993 34 1 1.5294 -2.5969 0.4708 35 1 2.4628 -2.5820 1.9863 36 1 4.8271 0.3702 0.7750 37 1 4.8147 -1.2392 1.5351 38 1 5.6452 4.7309 1.9747 39 1 6.2928 -0.3032 4.8308 40 1 5.7025 -1.6934 3.7724 41 1 7.3027 -0.9772 1.9384 42 1 7.8934 0.4134 2.9959 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331772659.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:19 Heat of formation + Delta-G solvation = -64.993493 kcal Electronic energy + Delta-G solvation = -26022.656718 eV Core-core repulsion = 22451.681772 eV Total energy + Delta-G solvation = -3570.974946 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -37.54283 -37.01320 -36.32653 -35.63987 -35.04400 -32.07450 -31.65272 -29.20569 -28.53346 -27.42085 -26.34752 -25.38208 -21.56987 -21.18673 -19.33676 -18.40184 -17.64666 -17.28396 -16.65511 -16.02197 -15.55198 -15.29731 -15.14092 -14.94261 -14.43636 -13.99485 -13.84695 -13.64236 -13.32597 -13.03708 -12.93597 -12.71509 -12.63763 -12.43360 -12.34186 -12.25986 -12.01743 -11.63311 -11.37886 -11.25355 -11.01322 -10.87752 -10.80142 -10.62666 -10.45811 -10.28045 -10.12953 -10.01957 -9.50018 -9.08577 -8.94275 -8.57373 -8.29235 -8.25940 -6.04618 -4.15369 0.90287 1.41748 2.51404 3.24972 3.47004 3.54204 3.63205 3.90593 4.49268 4.59026 4.61978 4.70231 4.86273 4.90200 4.94069 5.00597 5.07455 5.20669 5.22143 5.39130 5.40365 5.46938 5.61021 5.65932 5.70193 5.72102 5.83817 5.85704 6.00277 6.09884 6.13355 6.25647 6.32745 6.52553 6.67055 6.76410 6.94426 7.15513 7.69768 8.48474 8.96929 9.57561 11.05235 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012885 B = 0.007998 C = 0.006712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.510139 B = 3499.924638 C = 4170.842980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.164 3.836 3 H 0.109 0.891 4 C -0.458 4.458 5 S 1.198 4.802 6 C -0.490 4.490 7 O -0.814 6.814 8 N -1.019 6.019 9 C 0.088 3.912 10 S 2.610 3.390 11 O -0.955 6.955 12 O -0.924 6.924 13 C -0.606 4.606 14 C 0.011 3.989 15 C -0.530 4.530 16 H 0.085 0.915 17 C 0.104 3.896 18 N -0.874 5.874 19 Si 0.819 3.181 20 H -0.213 1.213 21 H -0.294 1.294 22 H -0.249 1.249 23 C -0.176 4.176 24 C -0.179 4.179 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.122 0.878 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.267 0.733 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.955 -17.536 -9.669 21.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.056 3.944 3 H 0.127 0.873 4 C -0.597 4.597 5 S 1.395 4.605 6 C -0.648 4.648 7 O -0.809 6.809 8 N -0.856 5.856 9 C -0.058 4.058 10 S 2.706 3.294 11 O -0.946 6.946 12 O -0.914 6.914 13 C -0.737 4.737 14 C 0.009 3.991 15 C -0.566 4.566 16 H 0.103 0.897 17 C -0.103 4.103 18 N -0.507 5.507 19 Si 0.644 3.356 20 H -0.137 1.137 21 H -0.220 1.220 22 H -0.172 1.172 23 C -0.214 4.214 24 C -0.218 4.218 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.140 0.860 29 H 0.116 0.884 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.146 0.854 37 H 0.131 0.869 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.695 -16.454 -8.355 19.631 hybrid contribution 0.121 0.585 -3.402 3.455 sum -6.574 -15.869 -11.758 20.815 Atomic orbital electron populations 1.22042 0.93923 1.02336 1.02627 1.20393 0.95862 0.96502 0.81605 0.87299 1.28054 1.20873 1.07477 1.03264 1.71397 0.87524 0.99939 1.01613 1.27640 1.08605 1.10682 1.17830 1.93518 1.72059 1.33997 1.81356 1.58346 1.66608 1.22356 1.38260 1.21455 1.01894 0.80823 1.01600 1.05258 0.76157 0.74140 0.73809 1.93497 1.84644 1.75792 1.40646 1.93601 1.81150 1.31859 1.84804 1.30662 1.23541 1.08106 1.11382 1.18669 0.91584 0.95249 0.93634 1.20353 1.50528 0.85523 1.00240 0.89733 1.24856 0.92811 0.94547 0.98111 1.69887 1.44744 0.99762 1.36327 0.87726 0.82297 0.79178 0.86387 1.13696 1.22045 1.17250 1.22945 1.04993 0.98011 0.95411 1.23058 0.95160 1.03144 1.00414 0.91868 0.91987 0.91478 0.85997 0.88409 0.90178 0.87652 0.87209 0.92354 0.91109 0.90587 0.85419 0.86877 0.92352 0.89006 0.90229 0.91005 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.19 37.16 0.34 -1.33 16 2 C 0.16 2.25 2.63 -67.93 -0.18 2.07 16 3 H 0.11 1.89 6.87 -51.93 -0.36 1.53 16 4 C -0.46 -4.69 5.27 37.16 0.20 -4.49 16 5 S 1.20 15.06 11.05 -107.50 -1.19 13.88 16 6 C -0.49 -4.44 10.74 101.05 1.09 -3.36 16 7 O -0.81 -16.07 14.03 -35.23 -0.49 -16.57 16 8 N -1.02 -14.71 2.54 -114.61 -0.29 -15.01 16 9 C 0.09 0.85 9.25 59.85 0.55 1.40 16 10 S 2.61 54.25 4.84 -107.50 -0.52 53.73 16 11 O -0.96 -20.86 17.09 -57.54 -0.98 -21.84 16 12 O -0.92 -23.71 16.13 -57.54 -0.93 -24.64 16 13 C -0.61 -12.15 4.46 37.16 0.17 -11.99 16 14 C 0.01 0.27 0.91 -155.66 -0.14 0.12 16 15 C -0.53 -15.29 8.32 -34.44 -0.29 -15.57 16 16 H 0.08 2.66 8.06 -52.48 -0.42 2.23 16 17 C 0.10 3.13 5.47 -17.82 -0.10 3.04 16 18 N -0.87 -27.93 13.96 55.43 0.77 -27.16 16 19 Si 0.82 21.78 24.62 -169.99 -4.19 17.60 16 20 H -0.21 -5.73 4.89 56.52 0.28 -5.46 16 21 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 22 H -0.25 -6.00 5.63 56.52 0.32 -5.69 16 23 C -0.18 -3.53 9.93 -26.69 -0.27 -3.79 16 24 C -0.18 -3.67 7.95 -26.70 -0.21 -3.88 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.12 0.75 6.66 -51.93 -0.35 0.41 16 29 H 0.10 0.95 8.14 -51.92 -0.42 0.53 16 30 H 0.08 0.77 8.14 -51.92 -0.42 0.34 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.40 6.43 -51.93 -0.33 0.07 16 35 H 0.08 0.65 7.79 -51.93 -0.40 0.25 16 36 H 0.13 2.71 2.41 -51.93 -0.13 2.58 16 37 H 0.11 1.57 8.10 -51.93 -0.42 1.15 16 38 H 0.27 8.05 8.31 -40.82 -0.34 7.71 16 39 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 LS Contribution 347.86 15.07 5.24 5.24 Total: -1.00 -39.92 347.86 -8.22 -48.14 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.80 Total: 4.40 kcal Atomic # 6 Polarization: -38.93 SS G_CDS: 1.16 Total: -37.77 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.48 Total: -42.16 kcal Atomic # 8 Polarization: -60.65 SS G_CDS: -2.41 Total: -63.05 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.19 Total: 17.60 kcal Atomic # 16 Polarization: 69.32 SS G_CDS: -1.71 Total: 67.61 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -39.92 -8.22 -48.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331772659.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.854 kcal (2) G-P(sol) polarization free energy of solvation -39.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds