Wall clock time and date at job start Fri Apr 10 2020 14:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47100 * 2 1 4 4 C 1.52999 * 109.46862 * 239.99787 * 2 1 3 5 5 S 1.81398 * 109.46942 * 179.97438 * 4 2 1 6 6 C 1.81402 * 103.00023 * 180.02562 * 5 4 2 7 7 O 1.42095 * 109.47381 * 296.39178 * 5 4 2 8 8 N 1.46500 * 109.46813 * 120.00227 * 2 1 3 9 9 C 1.46498 * 120.00000 * 60.00098 * 8 2 1 10 10 S 1.65597 * 120.00157 * 239.99625 * 8 2 1 11 11 O 1.42094 * 104.27989 * 153.92979 * 10 8 2 12 12 O 1.42098 * 104.27500 * 26.07267 * 10 8 2 13 13 C 1.81402 * 104.44961 * 270.00405 * 10 8 2 14 14 C 1.52998 * 109.47137 * 189.64347 * 13 10 8 15 15 C 1.50700 * 115.55017 * 304.63753 * 14 13 10 16 16 H 1.08004 * 120.00112 * 114.36148 * 15 14 13 17 17 C 1.37879 * 119.99968 * 294.08536 * 15 14 13 18 18 N 1.31511 * 119.99977 * 173.58398 * 17 15 14 19 19 Si 1.86799 * 119.99766 * 353.57913 * 17 15 14 20 20 H 1.48501 * 109.47096 * 95.96703 * 19 17 15 21 21 H 1.48499 * 109.47104 * 215.96544 * 19 17 15 22 22 H 1.48494 * 109.47301 * 335.96745 * 19 17 15 23 23 C 1.52999 * 117.49899 * 90.30247 * 14 13 10 24 24 C 1.52993 * 117.50036 * 158.96569 * 14 13 10 25 25 H 1.09005 * 109.47248 * 59.99571 * 1 2 3 26 26 H 1.08994 * 109.47100 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47031 * 299.99981 * 1 2 3 28 28 H 1.08990 * 109.47790 * 300.00369 * 4 2 1 29 29 H 1.09004 * 109.46528 * 60.00820 * 4 2 1 30 30 H 1.09003 * 109.46936 * 60.00366 * 6 5 4 31 31 H 1.08996 * 109.46948 * 180.02562 * 6 5 4 32 32 H 1.08997 * 109.47453 * 300.00754 * 6 5 4 33 33 H 1.08999 * 109.47155 * 269.99251 * 9 8 2 34 34 H 1.08993 * 109.47496 * 29.99518 * 9 8 2 35 35 H 1.09004 * 109.47173 * 150.00234 * 9 8 2 36 36 H 1.08996 * 109.47336 * 69.64435 * 13 10 8 37 37 H 1.08998 * 109.47084 * 309.64542 * 13 10 8 38 38 H 0.97003 * 119.99933 * 179.97438 * 18 17 15 39 39 H 1.08996 * 117.50112 * 215.00030 * 23 14 13 40 40 H 1.08997 * 117.49908 * 0.02957 * 23 14 13 41 41 H 1.08995 * 117.50175 * 359.97438 * 24 14 13 42 42 H 1.09003 * 117.49936 * 144.97273 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 3.8539 -0.7207 -1.2496 6 6 4.2620 -1.6039 -2.7807 7 8 4.3272 0.6165 -1.3343 8 7 2.0183 -0.6907 1.1962 9 6 1.6643 -2.0932 1.4279 10 16 2.9704 0.1140 2.2863 11 8 2.7432 -0.5614 3.5156 12 8 2.6122 1.4794 2.1234 13 6 4.6649 -0.1732 1.7059 14 6 5.6561 0.3183 2.7626 15 6 5.4963 1.7561 3.1848 16 1 5.1983 1.9922 4.1957 17 6 5.7361 2.7704 2.2821 18 7 5.4762 4.0173 2.6097 19 14 6.4303 2.3734 0.5939 20 1 5.3196 2.2712 -0.3865 21 1 7.3620 3.4515 0.1758 22 1 7.1611 1.0820 0.6504 23 6 6.1098 -0.6838 3.8260 24 6 7.0752 -0.2517 2.7194 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6766 -1.7489 -1.2493 29 1 1.6767 -0.2073 -2.1392 30 1 3.8427 -1.0678 -3.6321 31 1 5.3450 -1.6653 -2.8870 32 1 3.8434 -2.6095 -2.7427 33 1 0.7375 -2.1444 1.9993 34 1 1.5294 -2.5969 0.4708 35 1 2.4628 -2.5820 1.9863 36 1 4.8271 0.3702 0.7750 37 1 4.8147 -1.2392 1.5351 38 1 5.6452 4.7309 1.9747 39 1 6.2928 -0.3032 4.8308 40 1 5.7025 -1.6934 3.7724 41 1 7.3027 -0.9772 1.9384 42 1 7.8934 0.4134 2.9959 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331772659.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:18 Heat of formation + Delta-G solvation = -99.567824 kcal Electronic energy + Delta-G solvation = -26024.155974 eV Core-core repulsion = 22451.681772 eV Total energy + Delta-G solvation = -3572.474202 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.76704 -38.55226 -37.98285 -36.78080 -36.73731 -34.32480 -32.61069 -30.22575 -29.79601 -28.26368 -27.63546 -27.11953 -23.17462 -22.30282 -21.15423 -19.78263 -18.80568 -18.64066 -18.45624 -17.32451 -17.03810 -16.79672 -16.27830 -16.18271 -15.92704 -15.37659 -14.98800 -14.85164 -14.76139 -14.44467 -14.31171 -13.99439 -13.74411 -13.52717 -13.31869 -13.24701 -13.06883 -13.03113 -12.92861 -12.84105 -12.71508 -12.37816 -12.22515 -12.14576 -12.05894 -11.90651 -11.70688 -11.55816 -11.09161 -10.83684 -10.63531 -10.31143 -9.89755 -9.21855 -8.35804 -6.47044 -0.61814 0.56342 1.31907 1.43687 1.63972 1.72405 1.94095 2.35661 2.89431 2.96211 3.00972 3.23486 3.41281 3.58756 3.81551 3.97961 4.05913 4.15336 4.28797 4.34342 4.40302 4.49138 4.51206 4.56047 4.68890 4.73735 4.79846 4.95269 4.98945 4.99987 5.05902 5.11780 5.18392 5.26224 5.30013 5.35187 5.58624 5.62045 5.76133 6.20260 6.64646 7.28311 8.78874 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012885 B = 0.007998 C = 0.006712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.510139 B = 3499.924638 C = 4170.842980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.154 3.846 3 H 0.056 0.944 4 C -0.439 4.439 5 S 1.186 4.814 6 C -0.472 4.472 7 O -0.901 6.901 8 N -1.005 6.005 9 C 0.066 3.934 10 S 2.605 3.395 11 O -0.979 6.979 12 O -0.997 6.997 13 C -0.603 4.603 14 C -0.035 4.035 15 C -0.523 4.523 16 H 0.032 0.968 17 C 0.046 3.954 18 N -0.935 5.935 19 Si 0.871 3.129 20 H -0.221 1.221 21 H -0.307 1.307 22 H -0.202 1.202 23 C -0.161 4.161 24 C -0.164 4.164 25 H 0.075 0.925 26 H 0.100 0.900 27 H 0.041 0.959 28 H 0.180 0.820 29 H 0.105 0.895 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.158 0.842 33 H 0.059 0.941 34 H 0.126 0.874 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.182 0.818 38 H 0.263 0.737 39 H 0.076 0.924 40 H 0.126 0.874 41 H 0.119 0.881 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.186 -23.880 -12.571 27.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.047 3.953 3 H 0.074 0.926 4 C -0.579 4.579 5 S 1.389 4.611 6 C -0.632 4.632 7 O -0.896 6.896 8 N -0.845 5.845 9 C -0.077 4.077 10 S 2.703 3.297 11 O -0.969 6.969 12 O -0.987 6.987 13 C -0.735 4.735 14 C -0.038 4.038 15 C -0.560 4.560 16 H 0.050 0.950 17 C -0.155 4.155 18 N -0.572 5.572 19 Si 0.694 3.306 20 H -0.145 1.145 21 H -0.235 1.235 22 H -0.123 1.123 23 C -0.198 4.198 24 C -0.202 4.202 25 H 0.094 0.906 26 H 0.119 0.881 27 H 0.060 0.940 28 H 0.197 0.803 29 H 0.124 0.876 30 H 0.093 0.907 31 H 0.126 0.874 32 H 0.176 0.824 33 H 0.078 0.922 34 H 0.144 0.856 35 H 0.110 0.890 36 H 0.139 0.861 37 H 0.200 0.800 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.144 0.856 41 H 0.137 0.863 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.917 -22.821 -11.204 26.347 hybrid contribution 0.042 2.394 -2.478 3.446 sum -6.876 -20.427 -13.682 25.529 Atomic orbital electron populations 1.22070 0.91936 1.04653 1.02110 1.20478 0.97372 0.94669 0.82752 0.92573 1.27890 1.18282 1.10418 1.01311 1.70024 0.88779 0.98009 1.04325 1.27484 1.09177 1.12070 1.14436 1.93413 1.74827 1.37156 1.84221 1.57783 1.65355 1.24105 1.37262 1.22045 1.02632 0.77905 1.05132 1.04903 0.77270 0.73092 0.74399 1.93449 1.85232 1.75603 1.42597 1.93521 1.82550 1.36587 1.86024 1.30537 1.21237 1.12297 1.09387 1.18623 0.95015 0.92831 0.97325 1.20573 1.48326 0.89390 0.97751 0.94994 1.25703 0.93530 0.94262 1.02026 1.70050 1.48206 1.01127 1.37821 0.86922 0.81546 0.80497 0.81671 1.14530 1.23547 1.12325 1.23107 1.03540 0.99000 0.94149 1.23154 0.92601 1.02928 1.01564 0.90591 0.88100 0.94006 0.80256 0.87632 0.90735 0.87389 0.82398 0.92224 0.85598 0.89001 0.86133 0.80005 0.92811 0.90517 0.85608 0.86326 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.19 71.98 0.66 -2.30 16 2 C 0.15 3.97 2.63 44.99 0.12 4.09 16 3 H 0.06 2.06 6.87 -2.39 -0.02 2.05 16 4 C -0.44 -6.95 5.27 71.98 0.38 -6.57 16 5 S 1.19 25.36 11.05 -56.49 -0.62 24.74 16 6 C -0.47 -5.87 10.74 113.37 1.22 -4.65 16 7 O -0.90 -35.10 14.03 -148.98 -2.09 -37.19 16 8 N -1.00 -26.59 2.54 -516.53 -1.31 -27.90 16 9 C 0.07 0.93 9.25 127.77 1.18 2.11 16 10 S 2.60 108.83 4.84 -56.49 -0.27 108.56 16 11 O -0.98 -42.59 17.09 -127.65 -2.18 -44.77 16 12 O -1.00 -55.11 16.13 -127.65 -2.06 -57.17 16 13 C -0.60 -22.85 4.46 71.98 0.32 -22.53 16 14 C -0.04 -1.62 0.91 -52.93 -0.05 -1.67 16 15 C -0.52 -31.79 8.32 25.60 0.21 -31.57 16 16 H 0.03 2.19 8.06 -2.91 -0.02 2.16 16 17 C 0.05 2.90 5.47 84.66 0.46 3.37 16 18 N -0.93 -64.66 13.96 21.45 0.30 -64.36 16 19 Si 0.87 46.82 24.62 68.60 1.69 48.51 16 20 H -0.22 -12.30 4.89 99.48 0.49 -11.81 16 21 H -0.31 -16.91 7.11 99.48 0.71 -16.20 16 22 H -0.20 -9.10 5.63 99.48 0.56 -8.54 16 23 C -0.16 -5.98 9.93 30.62 0.30 -5.67 16 24 C -0.16 -6.12 7.95 30.62 0.24 -5.88 16 25 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.10 1.22 7.67 -2.39 -0.02 1.20 16 27 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.18 0.69 6.66 -2.40 -0.02 0.68 16 29 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.11 1.40 8.14 -2.39 -0.02 1.39 16 32 H 0.16 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.13 0.38 6.43 -2.39 -0.02 0.36 16 35 H 0.09 1.05 7.79 -2.38 -0.02 1.03 16 36 H 0.12 4.95 2.41 -2.39 -0.01 4.95 16 37 H 0.18 4.04 8.10 -2.39 -0.02 4.02 16 38 H 0.26 17.28 8.31 -92.71 -0.77 16.51 16 39 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 40 H 0.13 3.50 8.14 -2.39 -0.02 3.48 16 41 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 42 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -103.11 347.86 -0.86 -103.97 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.64 Total: 16.89 kcal Atomic # 6 Polarization: -76.33 SS G_CDS: 5.06 Total: -71.28 kcal Atomic # 7 Polarization: -91.25 SS G_CDS: -1.01 Total: -92.26 kcal Atomic # 8 Polarization: -132.80 SS G_CDS: -6.33 Total: -139.13 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.69 Total: 48.51 kcal Atomic # 16 Polarization: 134.19 SS G_CDS: -0.90 Total: 133.30 kcal Total: -103.11 -0.86 -103.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331772659.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.400 kcal (2) G-P(sol) polarization free energy of solvation -103.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds