Wall clock time and date at job start Fri Apr 10 2020 14:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47056 * 2 1 4 4 C 1.52998 * 109.47112 * 119.99796 * 2 1 3 5 5 S 1.81402 * 109.47322 * 185.00205 * 4 2 1 6 6 C 1.81396 * 103.00073 * 180.02562 * 5 4 2 7 7 O 1.42096 * 109.46870 * 63.61401 * 5 4 2 8 8 N 1.46501 * 109.47357 * 239.99932 * 2 1 3 9 9 C 1.46497 * 119.99901 * 300.00042 * 8 2 1 10 10 S 1.65598 * 119.99989 * 120.00139 * 8 2 1 11 11 O 1.42101 * 104.27549 * 206.07310 * 10 8 2 12 12 O 1.42102 * 104.27596 * 333.92549 * 10 8 2 13 13 C 1.81401 * 104.45140 * 89.99996 * 10 8 2 14 14 C 1.53000 * 109.47185 * 172.86993 * 13 10 8 15 15 C 1.50699 * 115.54942 * 65.38446 * 14 13 10 16 16 H 1.08002 * 120.00251 * 272.73861 * 15 14 13 17 17 C 1.37882 * 120.00261 * 92.73905 * 15 14 13 18 18 N 1.31514 * 120.00416 * 173.55975 * 17 15 14 19 19 Si 1.86801 * 119.99497 * 353.55323 * 17 15 14 20 20 H 1.48502 * 109.47169 * 94.26732 * 19 17 15 21 21 H 1.48499 * 109.46981 * 214.26413 * 19 17 15 22 22 H 1.48503 * 109.47341 * 334.26591 * 19 17 15 23 23 C 1.52991 * 117.49843 * 279.71868 * 14 13 10 24 24 C 1.52996 * 117.49840 * 211.05423 * 14 13 10 25 25 H 1.09003 * 109.47577 * 299.99923 * 1 2 3 26 26 H 1.09001 * 109.47056 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47286 * 60.00451 * 1 2 3 28 28 H 1.09002 * 109.47359 * 305.00043 * 4 2 1 29 29 H 1.08999 * 109.47237 * 64.99967 * 4 2 1 30 30 H 1.09004 * 109.47528 * 59.99918 * 6 5 4 31 31 H 1.09001 * 109.47212 * 180.02562 * 6 5 4 32 32 H 1.09005 * 109.47270 * 300.00010 * 6 5 4 33 33 H 1.09001 * 109.46931 * 90.00088 * 9 8 2 34 34 H 1.09005 * 109.46836 * 210.00074 * 9 8 2 35 35 H 1.09004 * 109.47162 * 329.99876 * 9 8 2 36 36 H 1.09003 * 109.46861 * 292.86871 * 13 10 8 37 37 H 1.09000 * 109.47136 * 52.86508 * 13 10 8 38 38 H 0.97001 * 119.99905 * 180.02562 * 18 17 15 39 39 H 1.08996 * 117.50047 * 359.97438 * 23 14 13 40 40 H 1.09003 * 117.50243 * 145.01950 * 23 14 13 41 41 H 1.09004 * 117.49588 * 214.97999 * 24 14 13 42 42 H 1.08998 * 117.49794 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 16 3.8478 -0.5932 1.3257 6 6 4.2566 -1.4928 2.8469 7 8 4.2204 0.7708 1.4669 8 7 2.0183 -0.6906 -1.1962 9 6 1.6644 -2.0932 -1.4280 10 16 2.9704 0.1142 -2.2862 11 8 2.7433 -0.5612 -3.5156 12 8 2.6121 1.4796 -2.1234 13 6 4.6649 -0.1729 -1.7058 14 6 5.6561 0.3754 -2.7343 15 6 5.6349 1.8701 -2.9247 16 1 4.9514 2.3147 -3.6329 17 6 6.4882 2.6703 -2.1948 18 7 6.5606 3.9585 -2.4494 19 14 7.5411 1.9245 -0.8440 20 1 8.8779 1.5804 -1.3915 21 1 7.6961 2.9046 0.2608 22 1 6.8864 0.6958 -0.3275 23 6 5.9509 -0.4889 -3.9617 24 6 7.0055 -0.3341 -2.8630 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 1.6053 -0.2617 2.1370 29 1 1.7516 -1.7714 1.2057 30 1 3.9128 -2.5238 2.7629 31 1 5.3361 -1.4805 2.9974 32 1 3.7665 -1.0144 3.6949 33 1 0.7376 -2.1444 -1.9993 34 1 2.4630 -2.5819 -1.9863 35 1 1.5295 -2.5969 -0.4707 36 1 4.8131 0.3340 -0.7522 37 1 4.8287 -1.2429 -1.5777 38 1 7.1612 4.5213 -1.9361 39 1 5.4392 -1.4484 -4.0364 40 1 6.1300 0.0235 -4.9070 41 1 7.8779 0.2803 -3.0858 42 1 7.1873 -1.1912 -2.2146 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331772660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:21 Heat of formation + Delta-G solvation = -68.524338 kcal Electronic energy + Delta-G solvation = -25713.906754 eV Core-core repulsion = 22142.778699 eV Total energy + Delta-G solvation = -3571.128055 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -37.59317 -37.11642 -36.44759 -35.67526 -35.19035 -32.08169 -31.69567 -29.20980 -28.54981 -27.44762 -26.39722 -25.46554 -21.71904 -21.24083 -19.40879 -18.44366 -17.66422 -17.32930 -16.64674 -16.05198 -15.58593 -15.38162 -15.20482 -14.97465 -14.54637 -14.03230 -13.93056 -13.74426 -13.34364 -13.05663 -12.94686 -12.74293 -12.61948 -12.51443 -12.46564 -12.26330 -12.05119 -11.68913 -11.45309 -11.39433 -11.19354 -11.00469 -10.92624 -10.85414 -10.58895 -10.30319 -10.16376 -10.11020 -9.65741 -9.11093 -9.08331 -8.57223 -8.44375 -8.26565 -6.09788 -4.17327 0.80409 1.39045 2.49599 3.12876 3.31369 3.45478 3.46132 3.70229 4.39593 4.45377 4.54787 4.62362 4.84013 4.86517 4.90082 4.95743 5.05817 5.10815 5.15827 5.35301 5.36382 5.43317 5.57400 5.62535 5.66211 5.70839 5.79582 5.80957 5.94305 6.05472 6.09376 6.17889 6.21563 6.45255 6.65213 6.71787 6.92010 7.10038 7.65456 8.42624 8.94786 9.52247 11.01603 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013030 B = 0.007390 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.423678 B = 3787.865470 C = 4700.494145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.163 3.837 3 H 0.110 0.890 4 C -0.463 4.463 5 S 1.214 4.786 6 C -0.493 4.493 7 O -0.823 6.823 8 N -1.015 6.015 9 C 0.089 3.911 10 S 2.603 3.397 11 O -0.956 6.956 12 O -0.933 6.933 13 C -0.594 4.594 14 C 0.005 3.995 15 C -0.512 4.512 16 H 0.087 0.913 17 C 0.091 3.909 18 N -0.882 5.882 19 Si 0.877 3.123 20 H -0.278 1.278 21 H -0.292 1.292 22 H -0.255 1.255 23 C -0.176 4.176 24 C -0.186 4.186 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.124 0.876 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.127 0.873 37 H 0.114 0.886 38 H 0.267 0.733 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.367 -18.028 8.416 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.056 3.944 3 H 0.128 0.872 4 C -0.601 4.601 5 S 1.411 4.589 6 C -0.650 4.650 7 O -0.819 6.819 8 N -0.852 5.852 9 C -0.057 4.057 10 S 2.699 3.301 11 O -0.947 6.947 12 O -0.923 6.923 13 C -0.725 4.725 14 C 0.003 3.997 15 C -0.549 4.549 16 H 0.105 0.895 17 C -0.114 4.114 18 N -0.517 5.517 19 Si 0.704 3.296 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.179 1.179 23 C -0.213 4.213 24 C -0.224 4.224 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.117 0.883 29 H 0.142 0.858 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.145 0.855 37 H 0.133 0.867 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.020 -16.893 7.130 20.013 hybrid contribution 0.130 0.278 3.324 3.338 sum -7.889 -16.615 10.454 21.156 Atomic orbital electron populations 1.22043 0.93896 1.02358 1.02637 1.20404 0.95883 0.96488 0.81612 0.87236 1.28115 1.21037 1.07724 1.03238 1.71205 0.88670 0.97097 1.01902 1.27674 1.08645 1.11002 1.17696 1.93323 1.75222 1.31255 1.82060 1.58210 1.66556 1.22319 1.38122 1.21454 1.01841 0.80748 1.01623 1.05453 0.76509 0.74138 0.73956 1.93515 1.84738 1.75639 1.40760 1.93593 1.81381 1.32275 1.85012 1.30583 1.22527 1.08039 1.11396 1.18770 0.93073 0.94957 0.92939 1.20316 1.23389 0.85855 1.25333 0.89538 1.24937 0.95955 0.94507 0.95977 1.69890 1.37125 1.04862 1.39790 0.86869 0.80543 0.80082 0.82081 1.20456 1.21842 1.17910 1.23063 1.03302 1.00459 0.94498 1.22995 0.94249 1.02159 1.03023 0.91822 0.91977 0.91507 0.88332 0.85813 0.87021 0.87571 0.90100 0.92381 0.90579 0.91075 0.85532 0.86724 0.92322 0.89859 0.88606 0.88892 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.19 37.15 0.34 -1.26 16 2 C 0.16 2.16 2.57 -67.93 -0.17 1.99 16 3 H 0.11 1.83 6.87 -51.93 -0.36 1.48 16 4 C -0.46 -4.61 5.33 37.16 0.20 -4.41 16 5 S 1.21 15.52 11.08 -107.50 -1.19 14.33 16 6 C -0.49 -4.54 10.74 101.05 1.09 -3.45 16 7 O -0.82 -16.77 17.23 -35.23 -0.61 -17.38 16 8 N -1.02 -13.89 2.71 -114.61 -0.31 -14.20 16 9 C 0.09 0.81 9.25 59.85 0.55 1.36 16 10 S 2.60 51.03 5.09 -107.50 -0.55 50.48 16 11 O -0.96 -19.52 17.09 -57.54 -0.98 -20.50 16 12 O -0.93 -22.74 16.30 -57.54 -0.94 -23.68 16 13 C -0.59 -11.47 4.81 37.16 0.18 -11.29 16 14 C 0.01 0.12 0.80 -155.67 -0.12 0.00 16 15 C -0.51 -14.69 8.84 -34.44 -0.30 -15.00 16 16 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 17 C 0.09 2.72 5.46 -17.82 -0.10 2.62 16 18 N -0.88 -27.77 13.96 55.43 0.77 -27.00 16 19 Si 0.88 22.50 24.78 -169.99 -4.21 18.28 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 22 H -0.26 -5.96 5.90 56.52 0.33 -5.63 16 23 C -0.18 -3.50 9.96 -26.70 -0.27 -3.76 16 24 C -0.19 -3.74 7.49 -26.69 -0.20 -3.94 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.51 7.67 -51.93 -0.40 0.12 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.10 0.92 8.14 -51.92 -0.42 0.50 16 29 H 0.12 0.73 6.48 -51.92 -0.34 0.39 16 30 H 0.11 0.62 8.14 -51.92 -0.42 0.19 16 31 H 0.11 1.00 8.14 -51.92 -0.42 0.57 16 32 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.61 7.79 -51.93 -0.40 0.20 16 35 H 0.07 0.38 6.34 -51.93 -0.33 0.05 16 36 H 0.13 2.60 4.32 -51.92 -0.22 2.38 16 37 H 0.11 1.51 8.09 -51.92 -0.42 1.09 16 38 H 0.27 7.87 8.31 -40.82 -0.34 7.53 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.10 1.95 8.14 -51.93 -0.42 1.52 16 41 H 0.09 1.99 6.98 -51.93 -0.36 1.63 16 42 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 355.12 15.07 5.35 5.35 Total: -1.00 -39.80 355.12 -8.16 -47.96 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.68 Total: 3.51 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: 1.19 Total: -37.15 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.46 Total: -41.20 kcal Atomic # 8 Polarization: -59.04 SS G_CDS: -2.53 Total: -61.56 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.21 Total: 18.28 kcal Atomic # 16 Polarization: 66.55 SS G_CDS: -1.74 Total: 64.81 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -39.80 -8.16 -47.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331772660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.565 kcal (2) G-P(sol) polarization free energy of solvation -39.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds