Wall clock time and date at job start Fri Apr 10 2020 14:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47056 * 2 1 4 4 C 1.52998 * 109.47112 * 119.99796 * 2 1 3 5 5 S 1.81402 * 109.47322 * 185.00205 * 4 2 1 6 6 C 1.81396 * 103.00073 * 180.02562 * 5 4 2 7 7 O 1.42096 * 109.46870 * 63.61401 * 5 4 2 8 8 N 1.46501 * 109.47357 * 239.99932 * 2 1 3 9 9 C 1.46497 * 119.99901 * 300.00042 * 8 2 1 10 10 S 1.65598 * 119.99989 * 120.00139 * 8 2 1 11 11 O 1.42101 * 104.27549 * 206.07310 * 10 8 2 12 12 O 1.42102 * 104.27596 * 333.92549 * 10 8 2 13 13 C 1.81401 * 104.45140 * 89.99996 * 10 8 2 14 14 C 1.53000 * 109.47185 * 172.86993 * 13 10 8 15 15 C 1.50699 * 115.54942 * 65.38446 * 14 13 10 16 16 H 1.08002 * 120.00251 * 272.73861 * 15 14 13 17 17 C 1.37882 * 120.00261 * 92.73905 * 15 14 13 18 18 N 1.31514 * 120.00416 * 173.55975 * 17 15 14 19 19 Si 1.86801 * 119.99497 * 353.55323 * 17 15 14 20 20 H 1.48502 * 109.47169 * 94.26732 * 19 17 15 21 21 H 1.48499 * 109.46981 * 214.26413 * 19 17 15 22 22 H 1.48503 * 109.47341 * 334.26591 * 19 17 15 23 23 C 1.52991 * 117.49843 * 279.71868 * 14 13 10 24 24 C 1.52996 * 117.49840 * 211.05423 * 14 13 10 25 25 H 1.09003 * 109.47577 * 299.99923 * 1 2 3 26 26 H 1.09001 * 109.47056 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47286 * 60.00451 * 1 2 3 28 28 H 1.09002 * 109.47359 * 305.00043 * 4 2 1 29 29 H 1.08999 * 109.47237 * 64.99967 * 4 2 1 30 30 H 1.09004 * 109.47528 * 59.99918 * 6 5 4 31 31 H 1.09001 * 109.47212 * 180.02562 * 6 5 4 32 32 H 1.09005 * 109.47270 * 300.00010 * 6 5 4 33 33 H 1.09001 * 109.46931 * 90.00088 * 9 8 2 34 34 H 1.09005 * 109.46836 * 210.00074 * 9 8 2 35 35 H 1.09004 * 109.47162 * 329.99876 * 9 8 2 36 36 H 1.09003 * 109.46861 * 292.86871 * 13 10 8 37 37 H 1.09000 * 109.47136 * 52.86508 * 13 10 8 38 38 H 0.97001 * 119.99905 * 180.02562 * 18 17 15 39 39 H 1.08996 * 117.50047 * 359.97438 * 23 14 13 40 40 H 1.09003 * 117.50243 * 145.01950 * 23 14 13 41 41 H 1.09004 * 117.49588 * 214.97999 * 24 14 13 42 42 H 1.08998 * 117.49794 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 16 3.8478 -0.5932 1.3257 6 6 4.2566 -1.4928 2.8469 7 8 4.2204 0.7708 1.4669 8 7 2.0183 -0.6906 -1.1962 9 6 1.6644 -2.0932 -1.4280 10 16 2.9704 0.1142 -2.2862 11 8 2.7433 -0.5612 -3.5156 12 8 2.6121 1.4796 -2.1234 13 6 4.6649 -0.1729 -1.7058 14 6 5.6561 0.3754 -2.7343 15 6 5.6349 1.8701 -2.9247 16 1 4.9514 2.3147 -3.6329 17 6 6.4882 2.6703 -2.1948 18 7 6.5606 3.9585 -2.4494 19 14 7.5411 1.9245 -0.8440 20 1 8.8779 1.5804 -1.3915 21 1 7.6961 2.9046 0.2608 22 1 6.8864 0.6958 -0.3275 23 6 5.9509 -0.4889 -3.9617 24 6 7.0055 -0.3341 -2.8630 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 1.6053 -0.2617 2.1370 29 1 1.7516 -1.7714 1.2057 30 1 3.9128 -2.5238 2.7629 31 1 5.3361 -1.4805 2.9974 32 1 3.7665 -1.0144 3.6949 33 1 0.7376 -2.1444 -1.9993 34 1 2.4630 -2.5819 -1.9863 35 1 1.5295 -2.5969 -0.4707 36 1 4.8131 0.3340 -0.7522 37 1 4.8287 -1.2429 -1.5777 38 1 7.1612 4.5213 -1.9361 39 1 5.4392 -1.4484 -4.0364 40 1 6.1300 0.0235 -4.9070 41 1 7.8779 0.2803 -3.0858 42 1 7.1873 -1.1912 -2.2146 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331772660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:21 Heat of formation + Delta-G solvation = -103.607880 kcal Electronic energy + Delta-G solvation = -25715.428090 eV Core-core repulsion = 22142.778699 eV Total energy + Delta-G solvation = -3572.649392 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.84158 -38.56530 -38.02683 -36.85384 -36.80634 -34.30307 -32.61685 -30.17094 -29.82910 -28.27645 -27.67313 -27.14999 -23.30148 -22.33024 -21.17417 -19.76855 -18.85142 -18.59546 -18.44142 -17.28214 -17.09269 -16.87235 -16.33232 -16.20340 -15.96895 -15.45216 -14.93562 -14.85569 -14.80671 -14.54703 -14.33001 -13.92010 -13.73958 -13.56727 -13.34801 -13.28690 -13.23091 -13.01977 -12.97896 -12.86721 -12.69949 -12.56900 -12.34172 -12.20222 -11.95466 -11.94351 -11.76919 -11.66607 -11.14484 -10.93008 -10.72040 -10.32809 -9.88928 -9.25186 -8.36737 -6.47098 -0.64965 0.52127 1.24822 1.37724 1.44598 1.69031 1.87855 2.32336 2.77968 2.90391 2.99283 3.21637 3.30002 3.57224 3.80161 3.98091 4.04693 4.15059 4.25799 4.32091 4.38078 4.44072 4.47505 4.54327 4.64143 4.72479 4.79896 4.94787 4.94852 4.99158 5.09323 5.11086 5.19134 5.26123 5.29357 5.35831 5.54450 5.62770 5.74791 6.16058 6.64537 7.25486 8.79847 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013030 B = 0.007390 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.423678 B = 3787.865470 C = 4700.494145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.154 3.846 3 H 0.056 0.944 4 C -0.440 4.440 5 S 1.195 4.805 6 C -0.474 4.474 7 O -0.920 6.920 8 N -1.001 6.001 9 C 0.067 3.933 10 S 2.601 3.399 11 O -0.974 6.974 12 O -1.005 7.005 13 C -0.592 4.592 14 C -0.039 4.039 15 C -0.510 4.510 16 H 0.027 0.973 17 C 0.023 3.977 18 N -0.945 5.945 19 Si 0.927 3.073 20 H -0.249 1.249 21 H -0.315 1.315 22 H -0.213 1.213 23 C -0.164 4.164 24 C -0.170 4.170 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.042 0.958 28 H 0.108 0.892 29 H 0.183 0.817 30 H 0.163 0.837 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.115 0.885 37 H 0.186 0.814 38 H 0.265 0.735 39 H 0.126 0.874 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.746 -24.818 10.948 28.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.047 3.953 3 H 0.075 0.925 4 C -0.580 4.580 5 S 1.399 4.601 6 C -0.634 4.634 7 O -0.915 6.915 8 N -0.841 5.841 9 C -0.076 4.076 10 S 2.699 3.301 11 O -0.964 6.964 12 O -0.995 6.995 13 C -0.724 4.724 14 C -0.041 4.041 15 C -0.547 4.547 16 H 0.045 0.955 17 C -0.175 4.175 18 N -0.583 5.583 19 Si 0.751 3.249 20 H -0.173 1.173 21 H -0.243 1.243 22 H -0.135 1.135 23 C -0.201 4.201 24 C -0.208 4.208 25 H 0.093 0.907 26 H 0.119 0.881 27 H 0.062 0.938 28 H 0.126 0.874 29 H 0.201 0.799 30 H 0.181 0.819 31 H 0.125 0.875 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.142 0.858 36 H 0.134 0.866 37 H 0.204 0.796 38 H 0.074 0.926 39 H 0.144 0.856 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.399 -23.706 9.601 26.920 hybrid contribution 0.043 2.289 2.513 3.399 sum -8.356 -21.417 12.114 25.986 Atomic orbital electron populations 1.22068 0.91849 1.04679 1.02157 1.20480 0.97421 0.94658 0.82784 0.92528 1.27921 1.17723 1.10860 1.01542 1.69752 0.90545 0.95066 1.04767 1.27513 1.08899 1.12624 1.14322 1.93236 1.78262 1.35026 1.84991 1.57681 1.65271 1.24070 1.37083 1.22040 1.02659 0.77811 1.05059 1.05041 0.77419 0.73057 0.74550 1.93472 1.85194 1.75356 1.42346 1.93511 1.82724 1.37047 1.86208 1.30449 1.20580 1.12187 1.09151 1.18687 0.96963 0.91800 0.96671 1.20543 1.21030 0.90022 1.23144 0.95500 1.25942 0.98008 0.94788 0.98761 1.70068 1.39355 1.06929 1.41962 0.86057 0.80225 0.80448 0.78212 1.17349 1.24305 1.13469 1.23161 1.02997 1.01068 0.92875 1.23169 0.91987 1.02549 1.03101 0.90685 0.88092 0.93837 0.87384 0.79914 0.81913 0.87520 0.90493 0.92206 0.88840 0.85785 0.86644 0.79635 0.92591 0.85563 0.90494 0.90635 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.19 71.98 0.66 -2.17 16 2 C 0.15 3.82 2.57 44.99 0.12 3.94 16 3 H 0.06 2.04 6.87 -2.39 -0.02 2.02 16 4 C -0.44 -6.80 5.33 71.98 0.38 -6.42 16 5 S 1.20 26.78 11.08 -56.49 -0.63 26.16 16 6 C -0.47 -6.18 10.74 113.37 1.22 -4.96 16 7 O -0.92 -38.14 17.23 -148.98 -2.57 -40.71 16 8 N -1.00 -24.88 2.71 -516.52 -1.40 -26.28 16 9 C 0.07 0.85 9.25 127.77 1.18 2.03 16 10 S 2.60 102.53 5.09 -56.49 -0.29 102.25 16 11 O -0.97 -39.20 17.09 -127.65 -2.18 -41.38 16 12 O -1.00 -53.32 16.30 -127.65 -2.08 -55.40 16 13 C -0.59 -21.62 4.81 71.98 0.35 -21.27 16 14 C -0.04 -1.75 0.80 -52.93 -0.04 -1.79 16 15 C -0.51 -31.09 8.84 25.60 0.23 -30.86 16 16 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 17 C 0.02 1.48 5.46 84.66 0.46 1.94 16 18 N -0.94 -64.41 13.96 21.45 0.30 -64.12 16 19 Si 0.93 47.03 24.78 68.60 1.70 48.73 16 20 H -0.25 -11.33 7.11 99.48 0.71 -10.62 16 21 H -0.31 -17.02 7.11 99.48 0.71 -16.31 16 22 H -0.21 -9.26 5.90 99.48 0.59 -8.67 16 23 C -0.16 -6.13 9.96 30.62 0.30 -5.82 16 24 C -0.17 -6.22 7.49 30.62 0.23 -5.99 16 25 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.10 1.14 7.67 -2.39 -0.02 1.12 16 27 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.18 0.58 6.48 -2.39 -0.02 0.57 16 30 H 0.16 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.09 0.91 7.79 -2.38 -0.02 0.89 16 35 H 0.12 0.25 6.34 -2.38 -0.02 0.23 16 36 H 0.12 4.64 4.32 -2.39 -0.01 4.63 16 37 H 0.19 3.80 8.09 -2.39 -0.02 3.79 16 38 H 0.27 16.97 8.31 -92.71 -0.77 16.20 16 39 H 0.13 3.63 8.14 -2.39 -0.02 3.61 16 40 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.08 3.04 6.98 -2.39 -0.02 3.03 16 42 H 0.13 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -104.47 355.12 -1.17 -105.65 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.88 Total: 16.46 kcal Atomic # 6 Polarization: -76.45 SS G_CDS: 5.09 Total: -71.37 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -1.10 Total: -90.39 kcal Atomic # 8 Polarization: -130.66 SS G_CDS: -6.83 Total: -137.49 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.70 Total: 48.73 kcal Atomic # 16 Polarization: 129.32 SS G_CDS: -0.91 Total: 128.40 kcal Total: -104.47 -1.17 -105.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331772660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.039 kcal (2) G-P(sol) polarization free energy of solvation -104.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds