Wall clock time and date at job start Fri Apr 10 2020 14:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46436 * 2 1 4 4 C 1.53001 * 109.47162 * 119.99748 * 2 1 3 5 5 S 1.81393 * 109.46865 * 180.33718 * 4 2 1 6 6 C 1.81400 * 102.99814 * 174.18865 * 5 4 2 7 7 O 1.42101 * 109.47141 * 290.57100 * 5 4 2 8 8 N 1.46497 * 109.47008 * 240.00359 * 2 1 3 9 9 C 1.46500 * 119.99974 * 126.25221 * 8 2 1 10 10 S 1.65602 * 119.99748 * 306.24298 * 8 2 1 11 11 O 1.42100 * 104.27553 * 213.19287 * 10 8 2 12 12 O 1.42091 * 104.27769 * 341.05273 * 10 8 2 13 13 C 1.81405 * 104.44812 * 97.12654 * 10 8 2 14 14 C 1.52999 * 109.47102 * 173.63708 * 13 10 8 15 15 C 1.50700 * 115.55257 * 65.97375 * 14 13 10 16 16 H 1.07995 * 120.00295 * 267.23362 * 15 14 13 17 17 C 1.37882 * 119.99783 * 87.22989 * 15 14 13 18 18 N 1.31512 * 119.99865 * 179.08636 * 17 15 14 19 19 Si 1.86800 * 119.99801 * 359.09151 * 17 15 14 20 20 H 1.48500 * 109.47412 * 91.52466 * 19 17 15 21 21 H 1.48500 * 109.46935 * 211.52287 * 19 17 15 22 22 H 1.48498 * 109.47284 * 331.52407 * 19 17 15 23 23 C 1.53003 * 117.49619 * 280.30691 * 14 13 10 24 24 C 1.52996 * 117.49707 * 211.64858 * 14 13 10 25 25 H 1.08995 * 109.47471 * 299.99771 * 1 2 3 26 26 H 1.09011 * 109.46788 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47621 * 60.00285 * 1 2 3 28 28 H 1.09001 * 109.47378 * 300.33773 * 4 2 1 29 29 H 1.08999 * 109.46870 * 60.34057 * 4 2 1 30 30 H 1.08997 * 109.47370 * 59.99859 * 6 5 4 31 31 H 1.08999 * 109.47052 * 180.02562 * 6 5 4 32 32 H 1.09000 * 109.47184 * 299.99805 * 6 5 4 33 33 H 1.08996 * 109.47500 * 89.99710 * 9 8 2 34 34 H 1.09005 * 109.46644 * 209.99528 * 9 8 2 35 35 H 1.09005 * 109.46964 * 329.99053 * 9 8 2 36 36 H 1.09001 * 109.46838 * 293.63759 * 13 10 8 37 37 H 1.08998 * 109.47075 * 53.63367 * 13 10 8 38 38 H 0.97001 * 119.99534 * 180.02562 * 18 17 15 39 39 H 1.08999 * 117.50267 * 0.02562 * 23 14 13 40 40 H 1.09002 * 117.49765 * 145.02491 * 23 14 13 41 41 H 1.09003 * 117.50027 * 214.97568 * 24 14 13 42 42 H 1.09003 * 117.50225 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 16 3.8539 -0.7124 1.2542 6 6 4.2610 -1.4378 2.8663 7 8 4.3345 -1.5590 0.2191 8 7 2.0183 -0.6905 -1.1962 9 6 2.9698 -0.0247 -2.0892 10 16 1.4949 -2.2238 -1.5387 11 8 2.6112 -2.8442 -2.1618 12 8 0.9852 -2.7045 -0.3025 13 6 0.1500 -1.9868 -2.7328 14 6 -0.3171 -3.3482 -3.2517 15 6 -0.9699 -4.2439 -2.2307 16 1 -0.3768 -4.9629 -1.6852 17 6 -2.3245 -4.1455 -1.9928 18 7 -2.8973 -4.9394 -1.1148 19 14 -3.3459 -2.8844 -2.9179 20 1 -3.8924 -3.5003 -4.1537 21 1 -4.4653 -2.4260 -2.0565 22 1 -2.4920 -1.7244 -3.2790 23 6 0.5242 -4.0153 -4.3417 24 6 -0.8407 -3.4151 -4.6878 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 1.6718 -0.2109 2.1393 29 1 1.6817 -1.7506 1.2462 30 1 3.8468 -2.4441 2.9270 31 1 5.3440 -1.4827 2.9814 32 1 3.8370 -0.8219 3.6594 33 1 3.9871 -0.2477 -1.7677 34 1 2.8239 -0.3835 -3.1082 35 1 2.8062 1.0525 -2.0565 36 1 -0.6824 -1.4783 -2.2463 37 1 0.5071 -1.3830 -3.5671 38 1 -3.8503 -4.8704 -0.9477 39 1 1.4108 -3.4846 -4.6888 40 1 0.6052 -5.1021 -4.3205 41 1 -1.6571 -4.1072 -4.8941 42 1 -0.8528 -2.4891 -5.2628 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331772661.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:24 Heat of formation + Delta-G solvation = -66.604994 kcal Electronic energy + Delta-G solvation = -25639.006833 eV Core-core repulsion = 22067.962006 eV Total energy + Delta-G solvation = -3571.044826 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -37.47267 -37.11138 -36.23018 -35.39826 -34.99387 -32.17202 -31.74612 -28.96251 -28.61775 -27.11757 -25.62343 -25.45049 -21.95962 -21.67013 -19.28678 -18.17629 -17.44066 -16.68232 -16.60325 -16.18011 -15.49811 -15.13236 -14.86185 -14.82315 -14.57315 -13.94684 -13.88003 -13.54177 -13.03418 -12.99179 -12.79815 -12.70953 -12.59118 -12.50018 -12.49670 -12.05890 -11.99573 -11.54582 -11.32514 -11.25178 -11.09622 -11.02447 -10.93428 -10.62419 -10.36791 -10.35544 -10.03651 -9.88403 -9.68861 -9.16571 -8.88555 -8.68247 -8.39933 -8.13108 -6.17204 -4.24906 0.99491 1.65806 2.72298 3.20529 3.26830 3.30097 3.33990 3.95900 4.33934 4.56320 4.68823 4.81701 4.85022 4.97226 5.08633 5.13302 5.19393 5.22866 5.29331 5.43504 5.53749 5.61467 5.71311 5.72434 5.88797 5.89300 5.93919 6.02563 6.03507 6.09282 6.20195 6.34775 6.42802 6.56409 6.67374 6.86269 6.91361 7.06296 7.59088 8.37186 8.87742 9.43515 10.94208 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.019339 B = 0.005283 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.526400 B = 5298.302698 C = 5645.996526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.187 3.813 3 H 0.096 0.904 4 C -0.492 4.492 5 S 1.226 4.774 6 C -0.494 4.494 7 O -0.830 6.830 8 N -1.014 6.014 9 C 0.090 3.910 10 S 2.618 3.382 11 O -0.952 6.952 12 O -0.942 6.942 13 C -0.581 4.581 14 C 0.001 3.999 15 C -0.507 4.507 16 H 0.085 0.915 17 C 0.088 3.912 18 N -0.883 5.883 19 Si 0.873 3.127 20 H -0.275 1.275 21 H -0.290 1.290 22 H -0.256 1.256 23 C -0.178 4.178 24 C -0.186 4.186 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.122 0.878 29 H 0.134 0.866 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.125 0.875 37 H 0.103 0.897 38 H 0.267 0.733 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.155 18.033 4.154 21.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.080 3.920 3 H 0.114 0.886 4 C -0.631 4.631 5 S 1.424 4.576 6 C -0.651 4.651 7 O -0.825 6.825 8 N -0.851 5.851 9 C -0.056 4.056 10 S 2.714 3.286 11 O -0.942 6.942 12 O -0.932 6.932 13 C -0.712 4.712 14 C -0.002 4.002 15 C -0.544 4.544 16 H 0.103 0.897 17 C -0.116 4.116 18 N -0.519 5.519 19 Si 0.701 3.299 20 H -0.201 1.201 21 H -0.217 1.217 22 H -0.181 1.181 23 C -0.216 4.216 24 C -0.224 4.224 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.083 0.917 28 H 0.141 0.859 29 H 0.152 0.848 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.126 0.874 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.143 0.857 37 H 0.121 0.879 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.011 17.506 3.943 21.053 hybrid contribution -2.061 -0.970 -0.514 2.335 sum 8.950 16.537 3.429 19.113 Atomic orbital electron populations 1.22591 0.94355 1.05344 1.02987 1.20199 0.94464 0.95681 0.81697 0.88598 1.28571 1.20440 1.10572 1.03492 1.70103 0.87439 1.16136 0.83923 1.27683 1.07976 1.10069 1.19412 1.93259 1.72737 1.70003 1.46529 1.58060 1.57179 1.36799 1.33020 1.21530 0.93743 0.97347 0.92977 1.05046 0.75401 0.72063 0.76098 1.93521 1.49001 1.72771 1.78886 1.93438 1.81689 1.77424 1.40645 1.30437 1.18205 1.06751 1.15824 1.18870 1.01245 0.90524 0.89543 1.20338 0.93870 1.19640 1.20528 0.89663 1.24948 0.97521 0.94980 0.94200 1.69898 1.11439 1.37510 1.33028 0.86931 0.79974 0.83118 0.79917 1.20061 1.21707 1.18058 1.23033 0.93121 1.00711 1.04690 1.22996 0.97934 1.01709 0.99808 0.90395 0.89612 0.91743 0.85941 0.84770 0.89921 0.88066 0.87386 0.91373 0.91706 0.91384 0.85676 0.87885 0.92324 0.89995 0.88630 0.88918 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.55 8.46 37.16 0.31 -2.24 16 2 C 0.19 2.31 2.72 -67.93 -0.18 2.12 16 3 H 0.10 0.71 7.76 -51.93 -0.40 0.31 16 4 C -0.49 -6.14 5.30 37.16 0.20 -5.94 16 5 S 1.23 13.41 13.59 -107.50 -1.46 11.94 16 6 C -0.49 -4.79 10.74 101.05 1.09 -3.71 16 7 O -0.83 -15.18 15.95 -35.23 -0.56 -15.75 16 8 N -1.01 -15.96 1.95 -114.61 -0.22 -16.18 16 9 C 0.09 1.13 10.01 59.85 0.60 1.73 16 10 S 2.62 56.84 4.35 -107.50 -0.47 56.37 16 11 O -0.95 -23.45 17.36 -57.54 -1.00 -24.45 16 12 O -0.94 -23.01 12.53 -57.54 -0.72 -23.74 16 13 C -0.58 -12.15 5.57 37.16 0.21 -11.95 16 14 C 0.00 0.02 0.77 -155.66 -0.12 -0.10 16 15 C -0.51 -14.61 8.84 -34.44 -0.30 -14.92 16 16 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 17 C 0.09 2.54 5.47 -17.82 -0.10 2.45 16 18 N -0.88 -27.07 13.96 55.43 0.77 -26.29 16 19 Si 0.87 21.27 24.84 -169.99 -4.22 17.05 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.26 -5.76 5.79 56.52 0.33 -5.43 16 23 C -0.18 -3.92 9.96 -26.69 -0.27 -4.19 16 24 C -0.19 -4.02 7.55 -26.70 -0.20 -4.22 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.09 1.49 5.73 -51.92 -0.30 1.20 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.12 0.98 8.14 -51.92 -0.42 0.56 16 29 H 0.13 2.34 5.34 -51.92 -0.28 2.06 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 32 H 0.11 0.69 8.14 -51.92 -0.42 0.26 16 33 H 0.07 0.92 6.91 -51.93 -0.36 0.56 16 34 H 0.06 0.81 7.97 -51.93 -0.41 0.40 16 35 H 0.07 0.55 7.87 -51.93 -0.41 0.14 16 36 H 0.13 2.54 6.02 -51.92 -0.31 2.23 16 37 H 0.10 1.77 8.09 -51.92 -0.42 1.35 16 38 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 40 H 0.10 2.11 8.14 -51.93 -0.42 1.69 16 41 H 0.09 2.06 7.21 -51.93 -0.37 1.69 16 42 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 352.46 15.07 5.31 5.31 Total: -1.00 -40.86 352.46 -8.05 -48.90 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.70 Total: 7.78 kcal Atomic # 6 Polarization: -42.18 SS G_CDS: 1.23 Total: -40.95 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.55 Total: -42.48 kcal Atomic # 8 Polarization: -61.65 SS G_CDS: -2.28 Total: -63.93 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.22 Total: 17.05 kcal Atomic # 16 Polarization: 70.25 SS G_CDS: -1.93 Total: 68.32 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -40.86 -8.05 -48.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331772661.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.704 kcal (2) G-P(sol) polarization free energy of solvation -40.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds