Wall clock time and date at job start Fri Apr 10 2020 14:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46436 * 2 1 4 4 C 1.53001 * 109.47162 * 119.99748 * 2 1 3 5 5 S 1.81393 * 109.46865 * 180.33718 * 4 2 1 6 6 C 1.81400 * 102.99814 * 174.18865 * 5 4 2 7 7 O 1.42101 * 109.47141 * 290.57100 * 5 4 2 8 8 N 1.46497 * 109.47008 * 240.00359 * 2 1 3 9 9 C 1.46500 * 119.99974 * 126.25221 * 8 2 1 10 10 S 1.65602 * 119.99748 * 306.24298 * 8 2 1 11 11 O 1.42100 * 104.27553 * 213.19287 * 10 8 2 12 12 O 1.42091 * 104.27769 * 341.05273 * 10 8 2 13 13 C 1.81405 * 104.44812 * 97.12654 * 10 8 2 14 14 C 1.52999 * 109.47102 * 173.63708 * 13 10 8 15 15 C 1.50700 * 115.55257 * 65.97375 * 14 13 10 16 16 H 1.07995 * 120.00295 * 267.23362 * 15 14 13 17 17 C 1.37882 * 119.99783 * 87.22989 * 15 14 13 18 18 N 1.31512 * 119.99865 * 179.08636 * 17 15 14 19 19 Si 1.86800 * 119.99801 * 359.09151 * 17 15 14 20 20 H 1.48500 * 109.47412 * 91.52466 * 19 17 15 21 21 H 1.48500 * 109.46935 * 211.52287 * 19 17 15 22 22 H 1.48498 * 109.47284 * 331.52407 * 19 17 15 23 23 C 1.53003 * 117.49619 * 280.30691 * 14 13 10 24 24 C 1.52996 * 117.49707 * 211.64858 * 14 13 10 25 25 H 1.08995 * 109.47471 * 299.99771 * 1 2 3 26 26 H 1.09011 * 109.46788 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47621 * 60.00285 * 1 2 3 28 28 H 1.09001 * 109.47378 * 300.33773 * 4 2 1 29 29 H 1.08999 * 109.46870 * 60.34057 * 4 2 1 30 30 H 1.08997 * 109.47370 * 59.99859 * 6 5 4 31 31 H 1.08999 * 109.47052 * 180.02562 * 6 5 4 32 32 H 1.09000 * 109.47184 * 299.99805 * 6 5 4 33 33 H 1.08996 * 109.47500 * 89.99710 * 9 8 2 34 34 H 1.09005 * 109.46644 * 209.99528 * 9 8 2 35 35 H 1.09005 * 109.46964 * 329.99053 * 9 8 2 36 36 H 1.09001 * 109.46838 * 293.63759 * 13 10 8 37 37 H 1.08998 * 109.47075 * 53.63367 * 13 10 8 38 38 H 0.97001 * 119.99534 * 180.02562 * 18 17 15 39 39 H 1.08999 * 117.50267 * 0.02562 * 23 14 13 40 40 H 1.09002 * 117.49765 * 145.02491 * 23 14 13 41 41 H 1.09003 * 117.50027 * 214.97568 * 24 14 13 42 42 H 1.09003 * 117.50225 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 16 3.8539 -0.7124 1.2542 6 6 4.2610 -1.4378 2.8663 7 8 4.3345 -1.5590 0.2191 8 7 2.0183 -0.6905 -1.1962 9 6 2.9698 -0.0247 -2.0892 10 16 1.4949 -2.2238 -1.5387 11 8 2.6112 -2.8442 -2.1618 12 8 0.9852 -2.7045 -0.3025 13 6 0.1500 -1.9868 -2.7328 14 6 -0.3171 -3.3482 -3.2517 15 6 -0.9699 -4.2439 -2.2307 16 1 -0.3768 -4.9629 -1.6852 17 6 -2.3245 -4.1455 -1.9928 18 7 -2.8973 -4.9394 -1.1148 19 14 -3.3459 -2.8844 -2.9179 20 1 -3.8924 -3.5003 -4.1537 21 1 -4.4653 -2.4260 -2.0565 22 1 -2.4920 -1.7244 -3.2790 23 6 0.5242 -4.0153 -4.3417 24 6 -0.8407 -3.4151 -4.6878 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 1.6718 -0.2109 2.1393 29 1 1.6817 -1.7506 1.2462 30 1 3.8468 -2.4441 2.9270 31 1 5.3440 -1.4827 2.9814 32 1 3.8370 -0.8219 3.6594 33 1 3.9871 -0.2477 -1.7677 34 1 2.8239 -0.3835 -3.1082 35 1 2.8062 1.0525 -2.0565 36 1 -0.6824 -1.4783 -2.2463 37 1 0.5071 -1.3830 -3.5671 38 1 -3.8503 -4.8704 -0.9477 39 1 1.4108 -3.4846 -4.6888 40 1 0.6052 -5.1021 -4.3205 41 1 -1.6571 -4.1072 -4.8941 42 1 -0.8528 -2.4891 -5.2628 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331772661.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:23 Heat of formation + Delta-G solvation = -101.082270 kcal Electronic energy + Delta-G solvation = -25640.501879 eV Core-core repulsion = 22067.962006 eV Total energy + Delta-G solvation = -3572.539873 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.95649 -38.62627 -37.83246 -36.71661 -36.59054 -34.36845 -32.78410 -30.26508 -29.78601 -28.17337 -27.63980 -26.57776 -23.48429 -22.99928 -21.18022 -19.73870 -18.69107 -18.44283 -17.81872 -17.43885 -17.14244 -16.83155 -16.13559 -16.03478 -15.91162 -15.57132 -15.03986 -14.88887 -14.69453 -14.53360 -14.10926 -14.00765 -13.74613 -13.66764 -13.53932 -13.27523 -13.21393 -13.08411 -12.83520 -12.78631 -12.70325 -12.52646 -12.36689 -12.20417 -12.13115 -11.83923 -11.72137 -11.46608 -11.07342 -10.95552 -10.77729 -10.39395 -9.86238 -9.15713 -8.37903 -6.52848 -0.58820 0.78172 1.30714 1.31840 1.46684 1.82877 1.94477 2.30649 2.90733 2.94159 3.02770 3.12173 3.33754 3.59262 3.86674 3.99109 4.06972 4.22297 4.26002 4.28450 4.31901 4.43602 4.48834 4.50650 4.65553 4.74992 4.78444 4.84147 4.89542 4.92720 5.00994 5.10562 5.11707 5.12427 5.33408 5.34154 5.53453 5.55559 5.85210 6.12111 6.57152 7.19802 8.78758 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.019339 B = 0.005283 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.526400 B = 5298.302698 C = 5645.996526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.175 3.825 3 H 0.165 0.835 4 C -0.504 4.504 5 S 1.292 4.708 6 C -0.495 4.495 7 O -0.909 6.909 8 N -1.004 6.004 9 C 0.076 3.924 10 S 2.610 3.390 11 O -0.998 6.998 12 O -0.988 6.988 13 C -0.574 4.574 14 C -0.034 4.034 15 C -0.515 4.515 16 H 0.018 0.982 17 C 0.026 3.974 18 N -0.942 5.942 19 Si 0.938 3.062 20 H -0.261 1.261 21 H -0.289 1.289 22 H -0.215 1.215 23 C -0.182 4.182 24 C -0.162 4.162 25 H 0.108 0.892 26 H 0.033 0.967 27 H 0.083 0.917 28 H 0.170 0.830 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.114 0.886 32 H 0.151 0.849 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.150 0.850 38 H 0.270 0.730 39 H 0.107 0.893 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.996 23.596 2.932 25.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.069 3.931 3 H 0.182 0.818 4 C -0.643 4.643 5 S 1.492 4.508 6 C -0.654 4.654 7 O -0.905 6.905 8 N -0.844 5.844 9 C -0.068 4.068 10 S 2.708 3.292 11 O -0.988 6.988 12 O -0.978 6.978 13 C -0.706 4.706 14 C -0.036 4.036 15 C -0.552 4.552 16 H 0.037 0.963 17 C -0.173 4.173 18 N -0.579 5.579 19 Si 0.759 3.241 20 H -0.186 1.186 21 H -0.215 1.215 22 H -0.137 1.137 23 C -0.219 4.219 24 C -0.201 4.201 25 H 0.127 0.873 26 H 0.052 0.948 27 H 0.102 0.898 28 H 0.188 0.812 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.132 0.868 32 H 0.169 0.831 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.146 0.854 36 H 0.151 0.849 37 H 0.168 0.832 38 H 0.079 0.921 39 H 0.125 0.875 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.891 23.057 2.703 25.643 hybrid contribution -1.920 -2.767 0.064 3.368 sum 8.972 20.291 2.767 22.357 Atomic orbital electron populations 1.22664 0.95028 1.02633 1.05554 1.20772 0.94196 0.98330 0.79807 0.81765 1.28716 1.21134 1.08079 1.06331 1.68989 0.85359 1.14127 0.82348 1.27721 1.09130 1.08844 1.19657 1.93130 1.74694 1.72023 1.50655 1.57629 1.57308 1.34874 1.34612 1.21897 0.92269 1.00477 0.92156 1.04821 0.75161 0.73715 0.75489 1.93451 1.50678 1.75185 1.79500 1.93410 1.82318 1.79599 1.42493 1.30274 1.17948 1.05190 1.17177 1.18806 1.03386 0.91763 0.89685 1.20377 0.93962 1.19507 1.21367 0.96336 1.25999 0.98777 0.97410 0.95114 1.70075 1.12020 1.40250 1.35600 0.85908 0.78285 0.81270 0.78628 1.18570 1.21526 1.13743 1.23094 0.94843 1.00177 1.03807 1.23119 0.96721 1.03099 0.97140 0.87316 0.94826 0.89797 0.81231 0.90213 0.93170 0.86763 0.83099 0.92803 0.91793 0.85409 0.84891 0.83156 0.92113 0.87456 0.90409 0.89817 0.86057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.69 8.46 71.98 0.61 -4.08 16 2 C 0.17 3.71 2.72 44.99 0.12 3.84 16 3 H 0.17 1.31 7.76 -2.39 -0.02 1.29 16 4 C -0.50 -11.80 5.30 71.98 0.38 -11.42 16 5 S 1.29 26.51 13.59 -56.49 -0.77 25.74 16 6 C -0.50 -8.93 10.74 113.37 1.22 -7.72 16 7 O -0.91 -34.13 15.95 -148.98 -2.38 -36.50 16 8 N -1.00 -29.58 1.95 -516.50 -1.01 -30.58 16 9 C 0.08 1.67 10.01 127.77 1.28 2.95 16 10 S 2.61 115.82 4.35 -56.49 -0.25 115.58 16 11 O -1.00 -51.30 17.36 -127.65 -2.22 -53.52 16 12 O -0.99 -51.91 12.53 -127.65 -1.60 -53.51 16 13 C -0.57 -22.91 5.57 71.98 0.40 -22.51 16 14 C -0.03 -1.63 0.77 -52.93 -0.04 -1.67 16 15 C -0.52 -31.38 8.84 25.60 0.23 -31.15 16 16 H 0.02 1.32 8.06 -2.91 -0.02 1.29 16 17 C 0.03 1.55 5.47 84.66 0.46 2.02 16 18 N -0.94 -61.09 13.96 21.45 0.30 -60.79 16 19 Si 0.94 43.00 24.84 68.60 1.70 44.71 16 20 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 22 H -0.22 -8.40 5.79 99.48 0.58 -7.82 16 23 C -0.18 -7.92 9.96 30.62 0.30 -7.62 16 24 C -0.16 -6.52 7.55 30.62 0.23 -6.29 16 25 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.03 1.16 5.73 -2.38 -0.01 1.15 16 27 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.17 2.12 8.14 -2.39 -0.02 2.11 16 29 H 0.08 2.92 5.34 -2.39 -0.01 2.90 16 30 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.15 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.05 1.36 6.91 -2.39 -0.02 1.34 16 34 H 0.06 1.40 7.97 -2.38 -0.02 1.39 16 35 H 0.13 1.26 7.87 -2.38 -0.02 1.24 16 36 H 0.13 5.07 6.02 -2.39 -0.01 5.05 16 37 H 0.15 4.45 8.09 -2.39 -0.02 4.43 16 38 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 39 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 40 H 0.08 3.58 8.14 -2.39 -0.02 3.56 16 41 H 0.08 3.52 7.21 -2.39 -0.02 3.50 16 42 H 0.12 3.80 8.14 -2.39 -0.02 3.78 16 Total: -1.00 -103.01 352.46 -0.14 -103.15 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.87 Total: 29.40 kcal Atomic # 6 Polarization: -88.85 SS G_CDS: 5.19 Total: -83.66 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -0.71 Total: -91.38 kcal Atomic # 8 Polarization: -137.35 SS G_CDS: -6.19 Total: -143.54 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.70 Total: 44.71 kcal Atomic # 16 Polarization: 142.33 SS G_CDS: -1.01 Total: 141.32 kcal Total: -103.01 -0.14 -103.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331772661.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.067 kcal (2) G-P(sol) polarization free energy of solvation -103.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds