Wall clock time and date at job start Fri Apr 10 2020 14:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47069 * 2 1 4 4 C 1.52998 * 109.46699 * 240.00206 * 2 1 3 5 5 S 1.81398 * 109.46963 * 180.02562 * 4 2 1 6 6 C 1.81397 * 103.00212 * 180.02562 * 5 4 2 7 7 O 1.42107 * 109.47129 * 63.60765 * 5 4 2 8 8 N 1.46502 * 109.47019 * 120.00224 * 2 1 3 9 9 C 1.46502 * 120.00037 * 59.99962 * 8 2 1 10 10 S 1.65604 * 119.99843 * 239.99701 * 8 2 1 11 11 O 1.42099 * 104.27506 * 333.92896 * 10 8 2 12 12 O 1.42100 * 104.27387 * 206.07211 * 10 8 2 13 13 C 1.81397 * 104.44778 * 90.00294 * 10 8 2 14 14 C 1.53002 * 109.47047 * 183.75617 * 13 10 8 15 15 C 1.50698 * 115.55107 * 294.78459 * 14 13 10 16 16 H 1.07997 * 119.99869 * 95.18196 * 15 14 13 17 17 C 1.37881 * 119.99691 * 274.90982 * 15 14 13 18 18 N 1.31517 * 120.00015 * 6.54126 * 17 15 14 19 19 Si 1.86794 * 119.99732 * 186.53677 * 17 15 14 20 20 H 1.48497 * 109.47408 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47093 * 120.00191 * 19 17 15 22 22 H 1.48503 * 109.47192 * 239.99809 * 19 17 15 23 23 C 1.53000 * 117.49676 * 80.45231 * 14 13 10 24 24 C 1.52998 * 117.49699 * 149.11289 * 14 13 10 25 25 H 1.09003 * 109.47446 * 59.99349 * 1 2 3 26 26 H 1.08995 * 109.47593 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47162 * 300.00021 * 1 2 3 28 28 H 1.09005 * 109.47085 * 299.99636 * 4 2 1 29 29 H 1.08993 * 109.47354 * 59.99947 * 4 2 1 30 30 H 1.08997 * 109.47492 * 59.99679 * 6 5 4 31 31 H 1.09001 * 109.47273 * 180.02562 * 6 5 4 32 32 H 1.09004 * 109.47092 * 299.99561 * 6 5 4 33 33 H 1.09001 * 109.46639 * 269.99673 * 9 8 2 34 34 H 1.08998 * 109.46941 * 29.99792 * 9 8 2 35 35 H 1.08997 * 109.46875 * 150.00028 * 9 8 2 36 36 H 1.09002 * 109.47454 * 63.75300 * 13 10 8 37 37 H 1.08999 * 109.47269 * 303.75531 * 13 10 8 38 38 H 0.96996 * 119.99972 * 185.03797 * 18 17 15 39 39 H 1.08999 * 117.50080 * 215.00080 * 23 14 13 40 40 H 1.09002 * 117.49990 * 0.02714 * 23 14 13 41 41 H 1.09004 * 117.50302 * 359.97381 * 24 14 13 42 42 H 1.09006 * 117.50190 * 144.97660 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 16 3.8539 -0.7219 -1.2490 6 6 4.2619 -1.6048 -2.7801 7 8 4.3271 -1.4639 -0.1332 8 7 2.0183 -0.6907 1.1962 9 6 1.6644 -2.0933 1.4280 10 16 2.9704 0.1141 2.2862 11 8 3.6005 1.1301 1.5181 12 8 3.7315 -0.9108 2.9104 13 6 1.7964 0.8411 3.4625 14 6 2.5560 1.6972 4.4780 15 6 3.4967 0.9475 5.3857 16 1 4.5439 0.8703 5.1332 17 6 3.0215 0.3648 6.5414 18 7 1.7297 0.3514 6.7880 19 14 4.2124 -0.4056 7.7569 20 1 5.6006 -0.2594 7.2502 21 1 4.0907 0.2775 9.0698 22 1 3.8927 -1.8469 7.9174 23 6 2.9633 3.1080 4.0483 24 6 1.8312 2.9124 5.0600 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.6765 -1.7489 -1.2493 29 1 1.6765 -0.2074 -2.1392 30 1 3.8433 -1.0683 -3.6316 31 1 5.3450 -1.6670 -2.8861 32 1 3.8426 -2.6103 -2.7425 33 1 0.7375 -2.1444 1.9993 34 1 1.5294 -2.5969 0.4708 35 1 2.4628 -2.5819 1.9863 36 1 1.2645 0.0453 3.9839 37 1 1.0817 1.4640 2.9246 38 1 1.4008 0.0077 7.6333 39 1 3.9116 3.4939 4.4222 40 1 2.6897 3.4265 3.0424 41 1 0.8134 3.1024 4.7191 42 1 2.0345 3.1695 6.0996 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331772662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:26 Heat of formation + Delta-G solvation = -74.632783 kcal Electronic energy + Delta-G solvation = -25302.439477 eV Core-core repulsion = 21731.046540 eV Total energy + Delta-G solvation = -3571.392937 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -37.43695 -36.71000 -36.14849 -35.46094 -34.87812 -31.98862 -31.45435 -29.05040 -28.14845 -27.34700 -26.15251 -25.37711 -21.20717 -21.04125 -19.44535 -18.30643 -17.35282 -17.22732 -16.44145 -15.82251 -15.41886 -15.01616 -14.74066 -14.51802 -14.46544 -14.07234 -13.71780 -13.63662 -13.27225 -13.07312 -12.91984 -12.71739 -12.34189 -12.11546 -11.97573 -11.85761 -11.77474 -11.61058 -11.21869 -11.16704 -10.95887 -10.88434 -10.85829 -10.65289 -10.48789 -10.40411 -10.08535 -9.97736 -9.63985 -8.90392 -8.76601 -8.50315 -8.11889 -8.02137 -6.09943 -4.19467 1.14392 1.57588 2.69445 3.32662 3.39255 3.41446 3.49257 3.92225 4.43262 4.61671 4.77453 4.88024 5.00256 5.06292 5.07783 5.15539 5.20136 5.23675 5.35251 5.40874 5.55581 5.64805 5.70867 5.78838 5.83489 5.87982 6.02288 6.10075 6.21446 6.27221 6.35977 6.43963 6.65537 6.74553 6.94413 7.03061 7.29641 7.42442 7.85660 8.24928 8.87159 9.52061 10.98647 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.019442 B = 0.004793 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.806503 B = 5840.421760 C = 6230.797343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.164 3.836 3 H 0.109 0.891 4 C -0.461 4.461 5 S 1.249 4.751 6 C -0.501 4.501 7 O -0.821 6.821 8 N -1.009 6.009 9 C 0.094 3.906 10 S 2.610 3.390 11 O -0.975 6.975 12 O -0.932 6.932 13 C -0.560 4.560 14 C 0.041 3.959 15 C -0.510 4.510 16 H 0.069 0.931 17 C 0.080 3.920 18 N -0.876 5.876 19 Si 0.890 3.110 20 H -0.267 1.267 21 H -0.283 1.283 22 H -0.281 1.281 23 C -0.208 4.208 24 C -0.141 4.141 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.131 0.869 37 H 0.095 0.905 38 H 0.261 0.739 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.034 0.815 -19.048 19.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.056 3.944 3 H 0.127 0.873 4 C -0.599 4.599 5 S 1.444 4.556 6 C -0.658 4.658 7 O -0.816 6.816 8 N -0.844 5.844 9 C -0.051 4.051 10 S 2.708 3.292 11 O -0.965 6.965 12 O -0.922 6.922 13 C -0.692 4.692 14 C 0.039 3.961 15 C -0.547 4.547 16 H 0.087 0.913 17 C -0.124 4.124 18 N -0.512 5.512 19 Si 0.717 3.283 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.207 1.207 23 C -0.246 4.246 24 C -0.180 4.180 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.108 0.892 29 H 0.141 0.859 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.149 0.851 37 H 0.114 0.886 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.593 1.018 -18.335 18.545 hybrid contribution -1.265 -2.569 0.801 2.974 sum -3.858 -1.551 -17.534 18.020 Atomic orbital electron populations 1.22167 0.94576 1.02584 1.02430 1.20377 0.94865 0.96461 0.82691 0.87269 1.28105 1.21971 1.06176 1.03660 1.71236 0.86321 1.13387 0.84610 1.27786 1.08311 1.10557 1.19102 1.93254 1.72523 1.73067 1.42742 1.57994 1.70551 1.20838 1.35061 1.21353 1.00989 0.81425 1.01341 1.05203 0.75561 0.74230 0.74221 1.93423 1.73119 1.60592 1.69409 1.93528 1.66436 1.55878 1.76390 1.30119 1.14227 1.11743 1.13124 1.18305 0.97538 0.85232 0.95016 1.20599 0.94134 1.33590 1.06405 0.91297 1.24937 0.95058 0.94402 0.98046 1.70024 1.12197 1.45360 1.23574 0.86544 0.82001 0.79175 0.80562 1.19146 1.20860 1.20674 1.23207 0.99897 1.03048 0.98398 1.22538 0.93806 1.04072 0.97600 0.91529 0.92254 0.91731 0.89237 0.85906 0.87432 0.87978 0.90632 0.93352 0.92362 0.89472 0.85118 0.88616 0.92904 0.89489 0.90588 0.91599 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.19 37.16 0.34 -1.22 16 2 C 0.16 2.02 2.63 -67.93 -0.18 1.84 16 3 H 0.11 1.27 6.87 -51.93 -0.36 0.91 16 4 C -0.46 -4.46 5.28 37.16 0.20 -4.26 16 5 S 1.25 14.63 13.68 -107.50 -1.47 13.16 16 6 C -0.50 -4.28 10.74 101.05 1.09 -3.20 16 7 O -0.82 -15.63 16.28 -35.23 -0.57 -16.20 16 8 N -1.01 -16.84 1.74 -114.61 -0.20 -17.04 16 9 C 0.09 1.49 9.45 59.85 0.57 2.06 16 10 S 2.61 56.76 4.64 -107.50 -0.50 56.26 16 11 O -0.97 -20.87 16.57 -57.54 -0.95 -21.83 16 12 O -0.93 -24.67 16.11 -57.54 -0.93 -25.60 16 13 C -0.56 -12.30 6.03 37.16 0.22 -12.08 16 14 C 0.04 1.04 1.33 -155.66 -0.21 0.83 16 15 C -0.51 -14.45 8.08 -34.44 -0.28 -14.73 16 16 H 0.07 2.01 7.82 -52.49 -0.41 1.60 16 17 C 0.08 2.25 5.39 -17.82 -0.10 2.16 16 18 N -0.88 -24.75 12.93 55.43 0.72 -24.03 16 19 Si 0.89 22.15 29.55 -169.99 -5.02 17.12 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 23 C -0.21 -4.59 9.96 -26.69 -0.27 -4.86 16 24 C -0.14 -3.25 9.44 -26.69 -0.25 -3.50 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.57 7.67 -51.93 -0.40 0.18 16 27 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.09 0.88 6.66 -51.92 -0.35 0.54 16 29 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.10 0.87 8.14 -51.92 -0.42 0.44 16 32 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.77 6.43 -51.93 -0.33 0.44 16 35 H 0.09 1.62 6.91 -51.93 -0.36 1.26 16 36 H 0.13 3.04 8.14 -51.92 -0.42 2.62 16 37 H 0.10 1.75 8.09 -51.92 -0.42 1.33 16 38 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 39 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 366.81 15.07 5.53 5.53 Total: -1.00 -37.31 366.81 -9.10 -46.41 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -6.83 Total: 3.17 kcal Atomic # 6 Polarization: -38.09 SS G_CDS: 1.13 Total: -36.96 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.52 Total: -41.07 kcal Atomic # 8 Polarization: -61.17 SS G_CDS: -2.45 Total: -63.63 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 71.40 SS G_CDS: -1.97 Total: 69.43 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.31 -9.10 -46.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331772662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.225 kcal (2) G-P(sol) polarization free energy of solvation -37.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds