Wall clock time and date at job start Fri Apr 10 2020 14:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47069 * 2 1 4 4 C 1.52998 * 109.46699 * 240.00206 * 2 1 3 5 5 S 1.81398 * 109.46963 * 180.02562 * 4 2 1 6 6 C 1.81397 * 103.00212 * 180.02562 * 5 4 2 7 7 O 1.42107 * 109.47129 * 63.60765 * 5 4 2 8 8 N 1.46502 * 109.47019 * 120.00224 * 2 1 3 9 9 C 1.46502 * 120.00037 * 59.99962 * 8 2 1 10 10 S 1.65604 * 119.99843 * 239.99701 * 8 2 1 11 11 O 1.42099 * 104.27506 * 333.92896 * 10 8 2 12 12 O 1.42100 * 104.27387 * 206.07211 * 10 8 2 13 13 C 1.81397 * 104.44778 * 90.00294 * 10 8 2 14 14 C 1.53002 * 109.47047 * 183.75617 * 13 10 8 15 15 C 1.50698 * 115.55107 * 294.78459 * 14 13 10 16 16 H 1.07997 * 119.99869 * 95.18196 * 15 14 13 17 17 C 1.37881 * 119.99691 * 274.90982 * 15 14 13 18 18 N 1.31517 * 120.00015 * 6.54126 * 17 15 14 19 19 Si 1.86794 * 119.99732 * 186.53677 * 17 15 14 20 20 H 1.48497 * 109.47408 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47093 * 120.00191 * 19 17 15 22 22 H 1.48503 * 109.47192 * 239.99809 * 19 17 15 23 23 C 1.53000 * 117.49676 * 80.45231 * 14 13 10 24 24 C 1.52998 * 117.49699 * 149.11289 * 14 13 10 25 25 H 1.09003 * 109.47446 * 59.99349 * 1 2 3 26 26 H 1.08995 * 109.47593 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47162 * 300.00021 * 1 2 3 28 28 H 1.09005 * 109.47085 * 299.99636 * 4 2 1 29 29 H 1.08993 * 109.47354 * 59.99947 * 4 2 1 30 30 H 1.08997 * 109.47492 * 59.99679 * 6 5 4 31 31 H 1.09001 * 109.47273 * 180.02562 * 6 5 4 32 32 H 1.09004 * 109.47092 * 299.99561 * 6 5 4 33 33 H 1.09001 * 109.46639 * 269.99673 * 9 8 2 34 34 H 1.08998 * 109.46941 * 29.99792 * 9 8 2 35 35 H 1.08997 * 109.46875 * 150.00028 * 9 8 2 36 36 H 1.09002 * 109.47454 * 63.75300 * 13 10 8 37 37 H 1.08999 * 109.47269 * 303.75531 * 13 10 8 38 38 H 0.96996 * 119.99972 * 185.03797 * 18 17 15 39 39 H 1.08999 * 117.50080 * 215.00080 * 23 14 13 40 40 H 1.09002 * 117.49990 * 0.02714 * 23 14 13 41 41 H 1.09004 * 117.50302 * 359.97381 * 24 14 13 42 42 H 1.09006 * 117.50190 * 144.97660 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 16 3.8539 -0.7219 -1.2490 6 6 4.2619 -1.6048 -2.7801 7 8 4.3271 -1.4639 -0.1332 8 7 2.0183 -0.6907 1.1962 9 6 1.6644 -2.0933 1.4280 10 16 2.9704 0.1141 2.2862 11 8 3.6005 1.1301 1.5181 12 8 3.7315 -0.9108 2.9104 13 6 1.7964 0.8411 3.4625 14 6 2.5560 1.6972 4.4780 15 6 3.4967 0.9475 5.3857 16 1 4.5439 0.8703 5.1332 17 6 3.0215 0.3648 6.5414 18 7 1.7297 0.3514 6.7880 19 14 4.2124 -0.4056 7.7569 20 1 5.6006 -0.2594 7.2502 21 1 4.0907 0.2775 9.0698 22 1 3.8927 -1.8469 7.9174 23 6 2.9633 3.1080 4.0483 24 6 1.8312 2.9124 5.0600 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.6765 -1.7489 -1.2493 29 1 1.6765 -0.2074 -2.1392 30 1 3.8433 -1.0683 -3.6316 31 1 5.3450 -1.6670 -2.8861 32 1 3.8426 -2.6103 -2.7425 33 1 0.7375 -2.1444 1.9993 34 1 1.5294 -2.5969 0.4708 35 1 2.4628 -2.5819 1.9863 36 1 1.2645 0.0453 3.9839 37 1 1.0817 1.4640 2.9246 38 1 1.4008 0.0077 7.6333 39 1 3.9116 3.4939 4.4222 40 1 2.6897 3.4265 3.0424 41 1 0.8134 3.1024 4.7191 42 1 2.0345 3.1695 6.0996 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331772662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:25 Heat of formation + Delta-G solvation = -103.110330 kcal Electronic energy + Delta-G solvation = -25303.674356 eV Core-core repulsion = 21731.046540 eV Total energy + Delta-G solvation = -3572.627816 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.59594 -38.51143 -37.88311 -36.67489 -36.54890 -34.10663 -32.52325 -29.87113 -29.78422 -28.13680 -27.59597 -27.27146 -22.98286 -22.19725 -21.27885 -19.74163 -18.75608 -18.38057 -18.30878 -17.13308 -16.93263 -16.70089 -16.14298 -15.91842 -15.72167 -15.48126 -15.13248 -14.98905 -14.67907 -14.10409 -13.85407 -13.75735 -13.64912 -13.54794 -13.53071 -13.19211 -13.12790 -12.87225 -12.85297 -12.82702 -12.66816 -12.48493 -12.44964 -12.21684 -12.15603 -11.89361 -11.80097 -11.53764 -10.99095 -10.86228 -10.56598 -10.14162 -9.73741 -9.03304 -8.23524 -6.36789 -0.50041 0.73107 1.31310 1.35970 1.47182 1.87848 1.99181 2.37122 2.98831 3.04417 3.18398 3.38248 3.42824 3.66924 3.95788 4.09312 4.14638 4.28008 4.32424 4.40957 4.49719 4.51572 4.56507 4.60865 4.63431 4.78502 4.83018 4.88152 4.94401 4.99360 5.00270 5.14544 5.21550 5.29252 5.44618 5.46719 5.60886 5.69113 5.78206 6.20444 6.69854 7.35561 8.84689 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.019442 B = 0.004793 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.806503 B = 5840.421760 C = 6230.797343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.144 3.856 3 H 0.117 0.883 4 C -0.445 4.445 5 S 1.232 4.768 6 C -0.481 4.481 7 O -0.908 6.908 8 N -1.002 6.002 9 C 0.093 3.907 10 S 2.618 3.382 11 O -0.979 6.979 12 O -0.994 6.994 13 C -0.555 4.555 14 C 0.002 3.998 15 C -0.529 4.529 16 H 0.042 0.958 17 C 0.041 3.959 18 N -0.892 5.892 19 Si 0.931 3.069 20 H -0.276 1.276 21 H -0.263 1.263 22 H -0.280 1.280 23 C -0.192 4.192 24 C -0.135 4.135 25 H 0.102 0.898 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.179 0.821 30 H 0.151 0.849 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.112 0.888 37 H 0.135 0.865 38 H 0.265 0.735 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.204 1.815 -22.092 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.038 3.962 3 H 0.135 0.865 4 C -0.585 4.585 5 S 1.434 4.566 6 C -0.640 4.640 7 O -0.904 6.904 8 N -0.841 5.841 9 C -0.053 4.053 10 S 2.716 3.284 11 O -0.969 6.969 12 O -0.984 6.984 13 C -0.687 4.687 14 C 0.000 4.000 15 C -0.567 4.567 16 H 0.061 0.939 17 C -0.162 4.162 18 N -0.529 5.529 19 Si 0.757 3.243 20 H -0.200 1.200 21 H -0.188 1.188 22 H -0.206 1.206 23 C -0.229 4.229 24 C -0.174 4.174 25 H 0.121 0.879 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.197 0.803 30 H 0.169 0.831 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.130 0.870 37 H 0.153 0.847 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.125 0.875 41 H 0.109 0.891 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.742 2.049 -21.348 21.964 hybrid contribution -0.640 -2.872 1.526 3.314 sum -5.382 -0.823 -19.822 20.556 Atomic orbital electron populations 1.22181 0.92059 1.03293 1.03912 1.20947 0.96890 0.96753 0.81618 0.86527 1.27986 1.18871 1.06914 1.04705 1.70095 0.88019 1.13991 0.84516 1.27587 1.08662 1.10164 1.17600 1.93183 1.75462 1.75055 1.46665 1.57602 1.70237 1.20761 1.35478 1.21399 1.00166 0.81043 1.02648 1.04608 0.75769 0.73695 0.74328 1.93391 1.73697 1.60694 1.69108 1.93450 1.68959 1.57880 1.78122 1.29987 1.14521 1.11403 1.12776 1.18433 0.98742 0.86447 0.96424 1.20751 0.93763 1.34477 1.07695 0.93926 1.25494 0.96427 0.94915 0.99348 1.70055 1.12785 1.46013 1.24027 0.85912 0.80010 0.78662 0.79748 1.20033 1.18802 1.20584 1.23281 0.99486 1.00456 0.99674 1.22502 0.95314 1.02690 0.96934 0.87905 0.91974 0.92435 0.88985 0.80306 0.83062 0.88020 0.91308 0.91512 0.89561 0.93417 0.86997 0.84668 0.92591 0.89904 0.87462 0.89131 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.19 71.98 0.66 -1.71 16 2 C 0.14 3.09 2.63 44.99 0.12 3.20 16 3 H 0.12 2.33 6.87 -2.39 -0.02 2.32 16 4 C -0.45 -6.83 5.28 71.98 0.38 -6.45 16 5 S 1.23 27.25 13.68 -56.49 -0.77 26.48 16 6 C -0.48 -6.80 10.74 113.37 1.22 -5.58 16 7 O -0.91 -35.92 16.28 -148.98 -2.43 -38.35 16 8 N -1.00 -32.74 1.74 -516.52 -0.90 -33.64 16 9 C 0.09 2.94 9.45 127.77 1.21 4.15 16 10 S 2.62 116.00 4.64 -56.49 -0.26 115.74 16 11 O -0.98 -42.00 16.57 -127.65 -2.12 -44.11 16 12 O -0.99 -55.93 16.11 -127.65 -2.06 -57.98 16 13 C -0.55 -24.26 6.03 71.98 0.43 -23.83 16 14 C 0.00 0.09 1.33 -52.93 -0.07 0.02 16 15 C -0.53 -31.05 8.08 25.60 0.21 -30.85 16 16 H 0.04 2.64 7.82 -2.91 -0.02 2.61 16 17 C 0.04 2.34 5.39 84.66 0.46 2.80 16 18 N -0.89 -51.18 12.93 21.45 0.28 -50.90 16 19 Si 0.93 46.46 29.55 68.60 2.03 48.49 16 20 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 21 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 23 C -0.19 -8.26 9.96 30.62 0.30 -7.95 16 24 C -0.14 -6.12 9.44 30.62 0.29 -5.84 16 25 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.93 7.67 -2.39 -0.02 0.92 16 27 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.09 1.45 6.66 -2.39 -0.02 1.43 16 29 H 0.18 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.15 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.09 2.18 6.43 -2.39 -0.02 2.16 16 35 H 0.05 1.89 6.91 -2.39 -0.02 1.87 16 36 H 0.11 5.30 8.14 -2.39 -0.02 5.28 16 37 H 0.14 4.63 8.09 -2.39 -0.02 4.61 16 38 H 0.26 14.35 8.32 -92.71 -0.77 13.58 16 39 H 0.08 3.58 8.14 -2.39 -0.02 3.56 16 40 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 41 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 42 H 0.07 3.22 8.14 -2.38 -0.02 3.20 16 Total: -1.00 -87.45 366.81 -0.03 -87.48 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.99 Total: 18.84 kcal Atomic # 6 Polarization: -77.24 SS G_CDS: 5.21 Total: -72.04 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -0.62 Total: -84.54 kcal Atomic # 8 Polarization: -133.85 SS G_CDS: -6.60 Total: -140.44 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Atomic # 16 Polarization: 143.25 SS G_CDS: -1.03 Total: 142.21 kcal Total: -87.45 -0.03 -87.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331772662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.629 kcal (2) G-P(sol) polarization free energy of solvation -87.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds