Wall clock time and date at job start Fri Apr 10 2020 14:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 108.89674 * 2 1 4 4 C 1.53623 * 108.93084 * 241.44633 * 2 1 3 5 5 S 1.83241 * 105.34288 * 241.62569 * 4 2 1 6 6 O 1.42108 * 109.61101 * 133.32861 * 5 4 2 7 7 O 1.42097 * 109.61534 * 267.27997 * 5 4 2 8 8 C 1.83736 * 95.26347 * 20.37841 * 5 4 2 9 9 C 1.52970 * 108.93546 * 118.68100 * 2 1 3 10 10 H 1.08998 * 109.65660 * 210.52369 * 9 2 1 11 11 N 1.46501 * 109.65418 * 330.96553 * 9 2 1 12 12 C 1.34772 * 120.00144 * 272.49178 * 11 9 2 13 13 O 1.21582 * 120.00056 * 359.97438 * 12 11 9 14 14 C 1.47642 * 119.99848 * 180.27377 * 12 11 9 15 15 C 1.40011 * 119.89851 * 359.45038 * 14 12 11 16 16 C 1.36320 * 120.11008 * 179.71812 * 15 14 12 17 17 C 1.40891 * 119.88828 * 0.57823 * 16 15 14 18 18 C 1.41103 * 120.10256 * 179.67143 * 17 16 15 19 19 H 1.07997 * 120.00146 * 212.96336 * 18 17 16 20 20 C 1.40229 * 119.99752 * 32.97103 * 18 17 16 21 21 N 1.30642 * 120.00460 * 7.75410 * 20 18 17 22 22 Si 1.86803 * 119.99973 * 187.76206 * 20 18 17 23 23 H 1.48501 * 109.47182 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47425 * 119.99762 * 22 20 18 25 25 H 1.48501 * 109.47047 * 239.99633 * 22 20 18 26 26 C 1.40893 * 119.79155 * 359.69676 * 17 16 15 27 27 C 1.36315 * 119.89097 * 0.02562 * 26 17 16 28 28 H 1.08999 * 109.47015 * 299.10083 * 1 2 3 29 29 H 1.08996 * 109.47458 * 59.10348 * 1 2 3 30 30 H 1.08998 * 109.46908 * 179.10758 * 1 2 3 31 31 H 1.08994 * 110.26933 * 0.59337 * 4 2 1 32 32 H 1.08999 * 110.26782 * 122.56845 * 4 2 1 33 33 H 1.08997 * 110.99407 * 205.96771 * 8 5 4 34 34 H 1.09003 * 111.12589 * 81.94731 * 8 5 4 35 35 H 0.97004 * 119.99663 * 92.48252 * 11 9 2 36 36 H 1.08004 * 119.94440 * 359.97438 * 15 14 12 37 37 H 1.08000 * 120.05717 * 180.26974 * 16 15 14 38 38 H 0.96995 * 120.00419 * 180.02562 * 21 20 18 39 39 H 1.07996 * 120.04672 * 179.97438 * 26 17 16 40 40 H 1.08007 * 119.94260 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8830 1.0313 0.0000 4 6 2.0284 -0.6946 -1.2764 5 16 2.9800 -2.1493 -0.6968 6 8 2.5954 -3.2978 -1.4400 7 8 4.3528 -1.8034 -0.5746 8 6 2.2047 -2.2054 0.9681 9 6 2.0264 -0.6944 1.2694 10 1 2.9817 -0.2658 1.5721 11 7 1.0453 -0.5185 2.3431 12 6 1.0996 0.5716 3.1337 13 8 1.9632 1.4088 2.9562 14 6 0.1146 0.7458 4.2195 15 6 -0.8822 -0.2171 4.4187 16 6 -1.7904 -0.0634 5.4236 17 6 -1.7324 1.0727 6.2548 18 6 -2.6744 1.2397 7.2919 19 1 -3.0014 2.2307 7.5700 20 6 -3.1860 0.1189 7.9616 21 7 -2.6827 -1.0648 7.7330 22 14 -4.5873 0.3183 9.1806 23 1 -4.9749 1.7497 9.2595 24 1 -5.7520 -0.4863 8.7320 25 1 -4.1487 -0.1499 10.5199 26 6 -0.7310 2.0418 6.0468 27 6 0.1762 1.8765 5.0429 28 1 -0.3633 0.4998 0.8979 29 1 -0.3634 0.5277 -0.8818 30 1 -0.3633 -1.0275 -0.0160 31 1 1.1838 -1.0145 -1.8865 32 1 2.6715 -0.0230 -1.8451 33 1 2.8702 -2.6738 1.6932 34 1 1.2417 -2.7150 0.9360 35 1 0.3564 -1.1866 2.4848 36 1 -0.9291 -1.0851 3.7777 37 1 -2.5563 -0.8089 5.5792 38 1 -3.0367 -1.8401 8.1959 39 1 -0.6829 2.9144 6.6812 40 1 0.9445 2.6186 4.8830 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346345612.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:02 Heat of formation + Delta-G solvation = -89.606451 kcal Electronic energy + Delta-G solvation = -24745.085837 eV Core-core repulsion = 21037.599642 eV Total energy + Delta-G solvation = -3707.486196 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.83028 -37.83130 -37.29870 -36.71907 -36.24669 -33.89295 -33.18089 -30.79031 -29.79758 -29.55971 -27.70267 -26.08627 -24.41438 -22.29096 -21.09142 -20.35336 -19.65135 -19.06220 -17.62405 -17.44510 -16.81045 -16.69154 -15.99732 -15.62574 -15.26582 -15.03782 -14.68102 -14.13362 -14.04707 -13.75414 -13.31626 -13.20869 -12.99873 -12.80544 -12.58869 -12.40922 -12.29933 -12.18614 -12.01090 -11.98169 -11.56873 -11.46831 -11.33562 -11.05304 -11.03146 -10.92277 -10.69476 -10.57990 -10.05888 -9.62994 -9.52625 -9.16068 -8.86615 -7.82899 -7.55955 -7.02270 -4.69744 -0.24607 2.07255 2.17287 2.86836 2.91162 2.93182 2.97880 3.28153 3.45103 3.66236 3.71600 3.75977 4.11516 4.33002 4.44151 4.49606 4.55905 4.64519 5.10642 5.25792 5.31166 5.37793 5.43659 5.52275 5.77232 5.86870 5.90321 5.98254 6.13357 6.20110 6.64762 6.68055 6.79251 6.91147 7.02508 7.35728 7.51464 7.64543 7.78264 7.99453 8.01998 8.33130 8.56798 8.65392 8.85389 9.90795 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.027079 B = 0.002656 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.745109 B =10538.810519 C =10971.934899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 H 0.101 0.899 4 C -0.577 4.577 5 S 2.388 3.612 6 O -0.938 6.938 7 O -0.930 6.930 8 C -0.595 4.595 9 C 0.154 3.846 10 H 0.111 0.889 11 N -0.725 5.725 12 C 0.573 3.427 13 O -0.568 6.568 14 C -0.278 4.278 15 C -0.067 4.067 16 C -0.166 4.166 17 C 0.132 3.868 18 C -0.448 4.448 19 H 0.084 0.916 20 C 0.072 3.928 21 N -0.785 5.785 22 Si 0.917 3.083 23 H -0.258 1.258 24 H -0.270 1.270 25 H -0.272 1.272 26 C -0.231 4.231 27 C -0.025 4.025 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.402 0.598 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.285 0.715 39 H 0.100 0.900 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.696 -3.336 -12.142 12.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 H 0.119 0.881 4 C -0.707 4.707 5 S 2.571 3.429 6 O -0.935 6.935 7 O -0.927 6.927 8 C -0.725 4.725 9 C 0.046 3.954 10 H 0.129 0.871 11 N -0.379 5.379 12 C 0.368 3.632 13 O -0.450 6.450 14 C -0.283 4.283 15 C -0.086 4.086 16 C -0.186 4.186 17 C 0.129 3.871 18 C -0.476 4.476 19 H 0.102 0.898 20 C -0.148 4.148 21 N -0.409 5.409 22 Si 0.740 3.260 23 H -0.182 1.182 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.251 4.251 27 C -0.044 4.044 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.162 0.838 34 H 0.161 0.839 35 H 0.239 0.761 36 H 0.108 0.892 37 H 0.138 0.862 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.001 -3.579 -12.627 13.721 hybrid contribution -1.558 0.030 1.063 1.886 sum 2.442 -3.549 -11.564 12.341 Atomic orbital electron populations 1.21938 0.93091 1.02268 1.03206 1.21617 0.98833 1.02107 0.89693 0.88109 1.30420 1.14797 1.18756 1.06749 1.09093 0.76958 0.77812 0.79051 1.93621 1.84586 1.46606 1.68687 1.93650 1.29021 1.84344 1.85676 1.30953 1.14778 1.03486 1.23242 1.21226 0.95846 0.89855 0.88432 0.87090 1.45849 1.33413 1.25668 1.32938 1.18652 0.84035 0.79765 0.80738 1.90656 1.38267 1.43361 1.72671 1.18877 1.03462 1.01786 1.04133 1.20493 0.94862 0.95857 0.97363 1.21000 1.01055 1.00898 0.95598 1.17830 0.89247 0.90365 0.89707 1.19846 1.19539 0.94234 1.14016 0.89753 1.26050 0.96639 0.94503 0.97577 1.69691 1.35541 0.99955 1.35721 0.86111 0.80217 0.80035 0.79590 1.18198 1.19516 1.19681 1.20831 0.98866 1.02952 1.02419 1.20388 0.96467 0.94704 0.92849 0.90687 0.92267 0.92463 0.84211 0.84476 0.83836 0.83907 0.76091 0.89244 0.86203 0.90396 0.88210 0.87976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.23 37.16 0.31 -1.13 16 2 C -0.10 -0.99 3.13 -90.31 -0.28 -1.27 16 3 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.58 -4.06 6.94 37.48 0.26 -3.80 16 5 S 2.39 21.13 6.05 -107.50 -0.65 20.48 16 6 O -0.94 -11.03 18.16 -57.67 -1.05 -12.08 16 7 O -0.93 -11.64 18.16 -57.67 -1.05 -12.69 16 8 C -0.60 -4.87 6.98 38.27 0.27 -4.60 16 9 C 0.15 1.75 2.67 -66.83 -0.18 1.57 16 10 H 0.11 1.42 7.52 -51.93 -0.39 1.03 16 11 N -0.73 -10.04 3.28 -53.75 -0.18 -10.22 16 12 C 0.57 10.75 7.31 -12.42 -0.09 10.66 16 13 O -0.57 -12.13 15.95 5.29 0.08 -12.04 16 14 C -0.28 -5.81 5.89 -104.73 -0.62 -6.42 16 15 C -0.07 -1.35 9.47 -39.61 -0.38 -1.72 16 16 C -0.17 -3.84 8.57 -39.27 -0.34 -4.17 16 17 C 0.13 3.20 5.51 -106.80 -0.59 2.61 16 18 C -0.45 -10.78 9.04 -37.75 -0.34 -11.13 16 19 H 0.08 1.95 7.86 -52.49 -0.41 1.54 16 20 C 0.07 1.63 5.28 -17.31 -0.09 1.54 16 21 N -0.78 -18.38 10.96 55.56 0.61 -17.77 16 22 Si 0.92 16.99 29.57 -169.99 -5.03 11.96 16 23 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 24 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 25 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 26 C -0.23 -5.32 9.73 -39.27 -0.38 -5.70 16 27 C -0.02 -0.55 9.52 -39.61 -0.38 -0.93 16 28 H 0.07 0.92 6.72 -51.93 -0.35 0.57 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.14 0.74 7.63 -51.93 -0.40 0.35 16 32 H 0.14 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.14 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.14 0.88 8.10 -51.93 -0.42 0.46 16 35 H 0.40 4.84 6.60 -40.82 -0.27 4.57 16 36 H 0.09 1.48 6.37 -52.48 -0.33 1.15 16 37 H 0.12 2.83 6.43 -52.49 -0.34 2.49 16 38 H 0.28 6.03 8.29 -40.82 -0.34 5.69 16 39 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.10 2.18 7.63 -52.48 -0.40 1.78 16 LS Contribution 343.64 15.07 5.18 5.18 Total: -1.00 -32.17 343.64 -9.88 -42.06 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -4.98 Total: 9.63 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: -2.83 Total: -24.50 kcal Atomic # 7 Polarization: -28.42 SS G_CDS: 0.43 Total: -27.99 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -2.01 Total: -36.81 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.96 kcal Atomic # 16 Polarization: 21.13 SS G_CDS: -0.65 Total: 20.48 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.17 -9.88 -42.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346345612.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.550 kcal (2) G-P(sol) polarization free energy of solvation -32.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds