Wall clock time and date at job start Fri Apr 10 2020 14:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81400 * 102.99903 * 2 1 4 4 H 1.09003 * 109.47608 * 55.00086 * 3 2 1 5 5 C 1.52996 * 109.47084 * 294.99922 * 3 2 1 6 6 O 1.42905 * 109.47199 * 294.99940 * 5 3 2 7 7 C 1.53007 * 109.47265 * 174.99969 * 3 2 1 8 8 H 1.09000 * 109.47093 * 185.00300 * 7 3 2 9 9 C 1.53003 * 109.46671 * 304.99924 * 7 3 2 10 10 N 1.46491 * 109.47023 * 64.99661 * 7 3 2 11 11 S 1.65601 * 120.00069 * 145.00029 * 10 7 3 12 12 O 1.42098 * 104.27794 * 308.93453 * 11 10 7 13 13 O 1.42098 * 104.27820 * 181.06901 * 11 10 7 14 14 C 1.81407 * 104.44612 * 65.00248 * 11 10 7 15 15 C 1.53000 * 109.47091 * 174.34737 * 14 11 10 16 16 C 1.50702 * 115.55070 * 295.23001 * 15 14 11 17 17 H 1.07993 * 120.00226 * 95.16158 * 16 15 14 18 18 C 1.37882 * 119.99822 * 274.88891 * 16 15 14 19 19 N 1.31515 * 119.99551 * 6.44628 * 18 16 15 20 20 Si 1.86792 * 120.00141 * 186.44700 * 18 16 15 21 21 H 1.48500 * 109.47156 * 89.99648 * 20 18 16 22 22 H 1.48496 * 109.47324 * 210.00192 * 20 18 16 23 23 H 1.48504 * 109.47240 * 330.00108 * 20 18 16 24 24 C 1.52998 * 117.49864 * 80.89449 * 15 14 11 25 25 C 1.52998 * 117.50210 * 149.55494 * 15 14 11 26 26 H 1.08998 * 109.46942 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47374 * 300.00321 * 1 2 3 28 28 H 1.09001 * 109.47008 * 60.00173 * 1 2 3 29 29 H 1.08996 * 109.47390 * 54.99860 * 5 3 2 30 30 H 1.09006 * 109.47078 * 175.00348 * 5 3 2 31 31 H 0.96692 * 114.00140 * 179.97438 * 6 5 3 32 32 H 1.09002 * 109.46854 * 179.97438 * 9 7 3 33 33 H 1.09005 * 109.47225 * 299.99788 * 9 7 3 34 34 H 1.09000 * 109.47549 * 60.00163 * 9 7 3 35 35 H 0.97001 * 120.00549 * 325.00217 * 10 7 3 36 36 H 1.08995 * 109.46970 * 54.34720 * 14 11 10 37 37 H 1.09000 * 109.46775 * 294.34286 * 14 11 10 38 38 H 0.97003 * 119.99746 * 185.04386 * 19 18 16 39 39 H 1.09007 * 117.50251 * 215.00100 * 24 15 14 40 40 H 1.09003 * 117.50010 * 0.02562 * 24 15 14 41 41 H 1.09008 * 117.49227 * 359.97438 * 25 15 14 42 42 H 1.08996 * 117.50141 * 144.97145 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2542 0.8418 5 6 1.7428 2.4015 -1.3073 6 8 2.4730 1.8450 -2.4024 7 6 3.7370 1.9413 0.1257 8 1 3.9750 3.0012 0.2151 9 6 4.2337 1.2004 1.3689 10 7 4.3918 1.3923 -1.0641 11 16 5.7565 2.1128 -1.6650 12 8 5.4050 3.4845 -1.7843 13 8 6.0864 1.3387 -2.8100 14 6 6.9991 1.8851 -0.3631 15 6 8.3558 2.3893 -0.8592 16 6 8.9481 1.6282 -2.0172 17 1 8.7968 1.9784 -3.0275 18 6 9.6881 0.4879 -1.7864 19 7 9.7715 -0.0069 -0.5707 20 14 10.5719 -0.3541 -3.2002 21 1 11.9401 0.2075 -3.3334 22 1 10.6592 -1.8120 -2.9315 23 1 9.8190 -0.1273 -4.4600 24 6 8.6152 3.8958 -0.7974 25 6 9.3227 2.9562 0.1822 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.6797 2.2009 -1.4402 30 1 1.9075 3.4785 -1.2707 31 1 2.2206 2.2014 -3.2651 32 1 5.3131 1.3238 1.4582 33 1 3.7464 1.6089 2.2542 34 1 3.9958 0.1405 1.2796 35 1 4.0262 0.6067 -1.5001 36 1 7.0739 0.8268 -0.1134 37 1 6.7043 2.4476 0.5228 38 1 10.3500 -0.7653 -0.3944 39 1 9.2144 4.3365 -1.5942 40 1 7.8195 4.5278 -0.4028 41 1 8.9920 2.9703 1.2208 42 1 10.3872 2.7782 0.0301 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451340146.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:09 Heat of formation + Delta-G solvation = -117.484134 kcal Electronic energy + Delta-G solvation = -24992.938611 eV Core-core repulsion = 21419.687500 eV Total energy + Delta-G solvation = -3573.251111 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.01607 -38.54669 -37.76854 -36.64446 -36.48309 -34.04726 -32.06876 -30.32979 -29.80257 -29.07030 -27.45042 -24.34493 -22.99214 -22.25737 -21.47639 -20.23432 -18.74631 -18.34715 -17.97660 -17.75972 -16.83692 -16.53618 -16.48020 -15.81662 -15.68051 -15.63185 -15.42376 -14.94875 -14.68084 -14.10993 -13.92654 -13.81894 -13.73532 -13.61391 -13.21475 -13.12995 -12.85954 -12.81413 -12.79641 -12.78160 -12.47990 -12.43955 -12.36107 -12.17610 -11.86720 -11.77954 -11.51071 -11.10973 -10.83686 -10.53557 -10.51853 -10.18270 -9.79562 -8.48956 -8.16906 -6.29278 -0.35848 0.75725 1.37925 1.41130 1.52227 1.73319 2.18576 2.42737 3.09250 3.12958 3.31219 3.38240 3.57418 3.65317 3.95018 4.07500 4.20810 4.28854 4.34770 4.39282 4.41320 4.51431 4.54763 4.57951 4.59884 4.66865 4.71609 4.85132 4.95602 4.96699 4.98485 5.22553 5.28341 5.43918 5.52201 5.59697 5.75771 6.25563 6.40103 6.76700 6.96978 7.42146 8.91049 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.018910 B = 0.004336 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.349375 B = 6455.504772 C = 6681.439115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.278 6.278 3 C -0.054 4.054 4 H 0.138 0.862 5 C 0.079 3.921 6 O -0.572 6.572 7 C 0.162 3.838 8 H 0.101 0.899 9 C -0.183 4.183 10 N -1.087 6.087 11 S 2.631 3.369 12 O -0.996 6.996 13 O -0.996 6.996 14 C -0.557 4.557 15 C 0.009 3.991 16 C -0.522 4.522 17 H 0.047 0.953 18 C 0.039 3.961 19 N -0.894 5.894 20 Si 0.933 3.067 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.277 1.277 24 C -0.201 4.201 25 C -0.136 4.136 26 H 0.104 0.896 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.385 0.615 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.421 0.579 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.263 0.737 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.226 3.763 6.107 21.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.052 6.052 3 C -0.184 4.184 4 H 0.156 0.844 5 C -0.001 4.001 6 O -0.379 6.379 7 C 0.054 3.946 8 H 0.119 0.881 9 C -0.242 4.242 10 N -0.849 5.849 11 S 2.727 3.273 12 O -0.986 6.986 13 O -0.986 6.986 14 C -0.689 4.689 15 C 0.007 3.993 16 C -0.560 4.560 17 H 0.065 0.935 18 C -0.163 4.163 19 N -0.531 5.531 20 Si 0.759 3.241 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.202 1.202 24 C -0.238 4.238 25 C -0.175 4.175 26 H 0.123 0.877 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.234 0.766 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.259 0.741 36 H 0.137 0.863 37 H 0.147 0.853 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.106 0.894 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.144 2.934 5.910 20.249 hybrid contribution -0.219 0.045 -0.778 0.810 sum -19.363 2.978 5.131 20.251 Atomic orbital electron populations 1.23489 0.92406 1.07091 1.05688 1.87308 1.09261 1.11009 1.97663 1.23731 0.98558 0.94922 1.01234 0.84375 1.22290 0.94844 0.96777 0.86152 1.86618 1.65026 1.68290 1.17946 1.20685 0.90399 0.98683 0.84883 0.88072 1.22558 1.01938 1.02217 0.97504 1.55369 1.42841 1.45621 1.41086 1.04079 0.74194 0.73383 0.75682 1.93431 1.82668 1.35826 1.86625 1.93480 1.84382 1.71789 1.48993 1.30044 1.12198 1.10346 1.16309 1.18446 0.91632 0.91275 0.97988 1.20707 1.34398 1.09182 0.91671 0.93452 1.25491 0.96752 0.96355 0.97684 1.70063 1.37477 1.24557 1.21000 0.85923 0.79323 0.78221 0.80648 1.19246 1.20270 1.20207 1.23295 1.04184 0.93218 1.03136 1.22481 0.97556 1.03157 0.94335 0.87715 0.89016 0.90020 0.91676 0.92050 0.76596 0.92439 0.88602 0.91283 0.74083 0.86258 0.85293 0.92741 0.89812 0.88202 0.89383 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 10.45 113.37 1.18 -0.25 16 2 S -0.28 -5.66 18.96 -56.49 -1.07 -6.73 16 3 C -0.05 -0.99 2.65 30.60 0.08 -0.91 16 4 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 5 C 0.08 1.39 6.58 71.98 0.47 1.86 16 6 O -0.57 -13.45 10.21 -148.98 -1.52 -14.97 16 7 C 0.16 3.87 2.61 45.00 0.12 3.99 16 8 H 0.10 2.32 7.48 -2.39 -0.02 2.30 16 9 C -0.18 -4.06 9.16 71.98 0.66 -3.40 16 10 N -1.09 -34.57 3.45 -169.39 -0.58 -35.15 16 11 S 2.63 109.49 5.33 -56.49 -0.30 109.19 16 12 O -1.00 -42.53 17.39 -127.65 -2.22 -44.75 16 13 O -1.00 -51.30 17.10 -127.65 -2.18 -53.48 16 14 C -0.56 -23.66 4.88 71.98 0.35 -23.31 16 15 C 0.01 0.43 1.34 -52.93 -0.07 0.36 16 16 C -0.52 -29.79 7.66 25.60 0.20 -29.59 16 17 H 0.05 2.83 7.82 -2.91 -0.02 2.81 16 18 C 0.04 2.22 5.39 84.66 0.46 2.67 16 19 N -0.89 -50.56 12.93 21.45 0.28 -50.29 16 20 Si 0.93 45.42 29.55 68.60 2.03 47.45 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 23 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 24 C -0.20 -8.72 9.96 30.62 0.30 -8.41 16 25 C -0.14 -6.18 9.44 30.62 0.29 -5.90 16 26 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.08 0.88 7.02 -2.39 -0.02 0.86 16 29 H 0.07 0.82 6.72 -2.39 -0.02 0.81 16 30 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.39 6.59 9.12 -74.06 -0.68 5.92 16 32 H 0.06 1.41 5.97 -2.39 -0.01 1.40 16 33 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.07 1.66 6.72 -2.39 -0.02 1.64 16 35 H 0.42 13.83 6.86 -96.75 -0.66 13.17 16 36 H 0.12 5.43 8.14 -2.39 -0.02 5.41 16 37 H 0.13 4.44 7.11 -2.39 -0.02 4.42 16 38 H 0.26 14.17 8.32 -92.71 -0.77 13.40 16 39 H 0.08 3.62 8.14 -2.38 -0.02 3.60 16 40 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 41 H 0.09 3.54 8.14 -2.38 -0.02 3.53 16 42 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -74.60 360.89 -1.84 -76.44 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: -0.30 Total: 35.19 kcal Atomic # 6 Polarization: -66.93 SS G_CDS: 4.04 Total: -62.89 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -0.31 Total: -85.44 kcal Atomic # 8 Polarization: -107.28 SS G_CDS: -5.92 Total: -113.20 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Atomic # 16 Polarization: 103.83 SS G_CDS: -1.37 Total: 102.46 kcal Total: -74.60 -1.84 -76.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451340146.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.043 kcal (2) G-P(sol) polarization free energy of solvation -74.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds