Wall clock time and date at job start Fri Apr 10 2020 14:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81400 * 103.00195 * 2 1 4 4 H 1.09000 * 109.46925 * 54.99832 * 3 2 1 5 5 C 1.53001 * 109.46920 * 294.99828 * 3 2 1 6 6 O 1.42900 * 109.47089 * 294.99749 * 5 3 2 7 7 C 1.52999 * 109.46911 * 174.99765 * 3 2 1 8 8 H 1.09000 * 109.47271 * 60.00279 * 7 3 2 9 9 C 1.53001 * 109.47380 * 299.99781 * 7 3 2 10 10 N 1.46500 * 109.46714 * 180.02562 * 7 3 2 11 11 S 1.65605 * 119.99906 * 214.99999 * 10 7 3 12 12 O 1.42106 * 104.27544 * 308.92984 * 11 10 7 13 13 O 1.42099 * 104.27705 * 181.07265 * 11 10 7 14 14 C 1.81399 * 104.45076 * 65.00001 * 11 10 7 15 15 C 1.52993 * 109.47345 * 183.87500 * 14 11 10 16 16 C 1.50705 * 115.54741 * 294.69010 * 15 14 11 17 17 H 1.08006 * 119.99798 * 114.88628 * 16 15 14 18 18 C 1.37871 * 119.99957 * 294.60931 * 16 15 14 19 19 N 1.31521 * 119.99862 * 174.87712 * 18 16 15 20 20 Si 1.86799 * 120.00177 * 354.87735 * 18 16 15 21 21 H 1.48502 * 109.47099 * 93.45231 * 20 18 16 22 22 H 1.48501 * 109.47324 * 213.45087 * 20 18 16 23 23 H 1.48498 * 109.47121 * 333.45354 * 20 18 16 24 24 C 1.53001 * 117.50217 * 80.35871 * 15 14 11 25 25 C 1.53000 * 117.49991 * 149.01856 * 15 14 11 26 26 H 1.09007 * 109.46564 * 59.99961 * 1 2 3 27 27 H 1.08998 * 109.47069 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47281 * 300.00213 * 1 2 3 29 29 H 1.08997 * 109.47094 * 54.99661 * 5 3 2 30 30 H 1.08999 * 109.46788 * 174.99740 * 5 3 2 31 31 H 0.96695 * 113.99920 * 180.02562 * 6 5 3 32 32 H 1.09000 * 109.47325 * 300.00465 * 9 7 3 33 33 H 1.09007 * 109.46794 * 60.00341 * 9 7 3 34 34 H 1.09000 * 109.47326 * 180.02562 * 9 7 3 35 35 H 0.97001 * 120.00015 * 35.00096 * 10 7 3 36 36 H 1.09001 * 109.47277 * 63.87256 * 14 11 10 37 37 H 1.09003 * 109.46912 * 303.87527 * 14 11 10 38 38 H 0.97000 * 119.99503 * 179.97438 * 19 18 16 39 39 H 1.08995 * 117.50375 * 215.00548 * 24 15 14 40 40 H 1.09007 * 117.49318 * 0.02562 * 24 15 14 41 41 H 1.08993 * 117.49843 * 359.97438 * 25 15 14 42 42 H 1.09002 * 117.49245 * 144.97189 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7429 2.4015 -1.3074 6 8 2.4731 1.8449 -2.4024 7 6 3.7370 1.9411 0.1258 8 1 4.2297 1.4544 -0.7160 9 6 4.2163 1.3070 1.4332 10 7 4.0665 3.3685 0.1264 11 16 5.4630 3.8963 -0.5905 12 8 6.4770 3.0726 -0.0311 13 8 5.4583 5.3008 -0.3751 14 6 5.2377 3.5215 -2.3510 15 6 6.5137 3.8785 -3.1158 16 6 6.8660 5.3435 -3.1443 17 1 7.7650 5.6923 -2.6578 18 6 6.0436 6.2377 -3.7962 19 7 6.2957 7.5272 -3.7363 20 14 4.5713 5.6179 -4.7645 21 1 3.3657 5.6354 -3.8976 22 1 4.3476 6.4958 -5.9412 23 1 4.8302 4.2299 -5.2245 24 6 7.6679 2.8752 -3.0719 25 6 6.8509 3.0466 -4.3548 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.6798 2.2009 -1.4402 30 1 1.9076 3.4784 -1.2707 31 1 2.2213 2.2020 -3.2650 32 1 3.7237 1.7936 2.2750 33 1 3.9710 0.2449 1.4331 34 1 5.2955 1.4311 1.5230 35 1 3.4668 4.0045 0.5467 36 1 4.4041 4.1044 -2.7428 37 1 5.0267 2.4589 -2.4721 38 1 5.7173 8.1562 -4.1952 39 1 8.6820 3.2746 -3.0635 40 1 7.5180 1.9604 -2.4983 41 1 6.1639 2.2447 -4.6248 42 1 7.3271 3.5591 -5.1907 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451340148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:14 Heat of formation + Delta-G solvation = -94.750478 kcal Electronic energy + Delta-G solvation = -25267.986855 eV Core-core repulsion = 21695.721549 eV Total energy + Delta-G solvation = -3572.265306 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.19190 -37.04861 -36.33086 -35.76812 -35.09591 -32.18301 -31.08843 -29.66486 -28.57265 -28.47463 -25.48370 -23.65715 -21.60925 -21.34811 -19.71865 -18.83116 -17.74588 -17.26270 -16.65274 -16.33474 -16.04063 -15.21175 -15.15403 -15.06630 -14.68209 -14.37665 -13.87194 -13.77317 -13.56775 -13.33268 -13.09040 -12.74783 -12.57222 -12.48515 -12.32018 -12.29193 -11.57463 -11.48185 -11.31746 -11.17128 -11.16647 -10.90132 -10.80570 -10.67196 -10.45312 -10.28124 -10.13711 -9.94700 -9.63302 -9.35907 -9.09339 -8.73772 -8.39545 -7.80152 -6.16054 -4.21137 0.94568 1.39930 2.30690 3.10400 3.26907 3.34376 3.39878 3.96087 4.30547 4.33012 4.46030 4.61017 4.80138 4.81844 4.84849 4.88207 4.99832 5.09239 5.15666 5.26112 5.35393 5.38278 5.45011 5.48061 5.54532 5.77252 5.91272 6.02104 6.08956 6.22172 6.31752 6.34489 6.51991 6.67308 6.90314 7.12264 7.16581 7.45859 7.61616 8.40297 8.89273 9.45328 10.95819 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016479 B = 0.005273 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.773676 B = 5308.991051 C = 5843.795023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.219 6.219 3 C -0.067 4.067 4 H 0.104 0.896 5 C 0.077 3.923 6 O -0.555 6.555 7 C 0.178 3.822 8 H 0.100 0.900 9 C -0.174 4.174 10 N -1.126 6.126 11 S 2.613 3.387 12 O -0.964 6.964 13 O -0.936 6.936 14 C -0.571 4.571 15 C 0.000 4.000 16 C -0.506 4.506 17 H 0.085 0.915 18 C 0.090 3.910 19 N -0.879 5.879 20 Si 0.859 3.141 21 H -0.280 1.280 22 H -0.288 1.288 23 H -0.243 1.243 24 C -0.181 4.181 25 C -0.176 4.176 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.382 0.618 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.410 0.590 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.266 0.734 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.963 -13.753 5.913 20.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.006 5.994 3 C -0.197 4.197 4 H 0.122 0.878 5 C -0.003 4.003 6 O -0.360 6.360 7 C 0.069 3.931 8 H 0.117 0.883 9 C -0.233 4.233 10 N -0.882 5.882 11 S 2.708 3.292 12 O -0.954 6.954 13 O -0.926 6.926 14 C -0.703 4.703 15 C -0.002 4.002 16 C -0.543 4.543 17 H 0.103 0.897 18 C -0.115 4.115 19 N -0.514 5.514 20 Si 0.686 3.314 21 H -0.206 1.206 22 H -0.215 1.215 23 H -0.166 1.166 24 C -0.218 4.218 25 C -0.215 4.215 26 H 0.094 0.906 27 H 0.119 0.881 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.230 0.770 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.243 0.757 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.212 -14.490 6.741 20.114 hybrid contribution -2.926 1.304 -1.394 3.494 sum -15.138 -13.186 5.348 20.776 Atomic orbital electron populations 1.23464 0.95366 1.06428 1.04684 1.86915 1.05916 1.08865 1.97679 1.23692 1.00832 0.95550 0.99656 0.87774 1.22229 0.94268 0.97068 0.86767 1.86510 1.64452 1.67889 1.17169 1.20307 0.91410 0.81310 1.00055 0.88257 1.22422 1.03363 1.01064 0.96414 1.56238 1.44476 1.13458 1.74026 1.05046 0.72726 0.74162 0.77261 1.93509 1.55585 1.70387 1.75966 1.93617 1.84665 1.29561 1.84776 1.30204 1.07606 1.09112 1.23349 1.18848 0.89296 0.94289 0.97813 1.20368 1.10976 0.86530 1.36448 0.89718 1.24906 0.97020 0.94408 0.95133 1.69892 1.38565 1.01372 1.41618 0.87126 0.83068 0.80938 0.80311 1.20644 1.21492 1.16594 1.22986 0.97089 1.00237 1.01502 1.23048 1.03446 1.02481 0.92512 0.90645 0.88065 0.90661 0.93586 0.92155 0.77040 0.92216 0.90756 0.90321 0.75746 0.86675 0.86538 0.92368 0.88970 0.89954 0.90910 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 10.45 101.05 1.06 0.15 16 2 S -0.22 -2.24 20.10 -107.50 -2.16 -4.40 16 3 C -0.07 -0.69 2.34 -26.73 -0.06 -0.75 16 4 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 5 C 0.08 0.76 6.35 37.16 0.24 1.00 16 6 O -0.55 -6.19 12.15 -35.23 -0.43 -6.62 16 7 C 0.18 2.28 2.06 -67.93 -0.14 2.14 16 8 H 0.10 1.39 6.50 -51.93 -0.34 1.05 16 9 C -0.17 -2.12 9.28 37.16 0.34 -1.78 16 10 N -1.13 -16.28 4.69 -4.89 -0.02 -16.30 16 11 S 2.61 52.47 5.14 -107.50 -0.55 51.91 16 12 O -0.96 -20.83 17.11 -57.54 -0.98 -21.81 16 13 O -0.94 -22.93 17.63 -57.54 -1.01 -23.95 16 14 C -0.57 -11.28 5.47 37.15 0.20 -11.07 16 15 C 0.00 0.01 0.79 -155.66 -0.12 -0.12 16 16 C -0.51 -14.10 8.65 -34.44 -0.30 -14.40 16 17 H 0.08 2.61 8.06 -52.48 -0.42 2.19 16 18 C 0.09 2.56 5.47 -17.82 -0.10 2.46 16 19 N -0.88 -26.68 13.96 55.43 0.77 -25.91 16 20 Si 0.86 20.13 24.94 -169.99 -4.24 15.89 16 21 H -0.28 -6.19 7.03 56.52 0.40 -5.79 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.24 -5.20 5.74 56.52 0.32 -4.88 16 24 C -0.18 -3.74 9.96 -26.69 -0.27 -4.00 16 25 C -0.18 -3.59 8.06 -26.69 -0.22 -3.81 16 26 H 0.07 0.49 7.02 -51.92 -0.36 0.13 16 27 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.37 6.72 -51.93 -0.35 0.02 16 30 H 0.06 0.61 7.76 -51.93 -0.40 0.21 16 31 H 0.38 3.18 9.12 45.56 0.42 3.59 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.83 6.92 -51.93 -0.36 0.47 16 34 H 0.08 1.11 7.42 -51.93 -0.39 0.73 16 35 H 0.41 4.99 8.80 -34.48 -0.30 4.68 16 36 H 0.12 2.26 5.02 -51.92 -0.26 2.00 16 37 H 0.12 1.94 6.90 -51.92 -0.36 1.58 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 40 H 0.08 1.54 8.14 -51.92 -0.42 1.12 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 LS Contribution 358.15 15.07 5.40 5.40 Total: -1.00 -35.12 358.15 -8.32 -43.44 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -5.73 Total: 12.53 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: 0.64 Total: -30.18 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.75 Total: -42.21 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -2.43 Total: -52.38 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.24 Total: 15.89 kcal Atomic # 16 Polarization: 50.23 SS G_CDS: -2.71 Total: 47.52 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.12 -8.32 -43.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451340148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.309 kcal (2) G-P(sol) polarization free energy of solvation -35.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds