Wall clock time and date at job start Fri Apr 10 2020 14:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 110.26619 * 2 1 4 4 C 1.53744 * 110.29589 * 237.84126 * 2 1 3 5 5 C 1.51213 * 104.58511 * 241.06982 * 4 2 1 6 6 C 1.38183 * 130.97446 * 179.97438 * 5 4 2 7 7 C 1.38233 * 120.14530 * 179.20303 * 6 5 4 8 8 C 1.38292 * 119.83159 * 0.73861 * 7 6 5 9 9 C 1.37844 * 120.21878 * 359.56618 * 8 7 6 10 10 C 1.38560 * 108.55778 * 359.75398 * 5 4 2 11 11 N 1.39839 * 111.61571 * 0.41811 * 10 5 4 12 12 C 1.34777 * 124.97465 * 179.84538 * 11 10 5 13 13 O 1.21286 * 119.99822 * 179.69356 * 12 11 10 14 14 C 1.50703 * 120.00161 * 359.68972 * 12 11 10 15 15 S 1.81401 * 109.47002 * 180.02562 * 14 12 11 16 16 O 1.42093 * 108.58081 * 294.48895 * 15 14 12 17 17 O 1.42099 * 108.57650 * 65.51676 * 15 14 12 18 18 C 1.81406 * 101.92055 * 179.97438 * 15 14 12 19 19 C 1.50691 * 109.47099 * 179.97438 * 18 15 14 20 20 H 1.08009 * 120.00067 * 0.02562 * 19 18 15 21 21 C 1.37876 * 120.00213 * 180.02562 * 19 18 15 22 22 N 1.31509 * 119.99764 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00181 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47501 * 59.99738 * 23 21 19 25 25 H 1.48501 * 109.47092 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47075 * 299.99640 * 23 21 19 27 27 H 1.09004 * 109.46793 * 297.93115 * 1 2 3 28 28 H 1.08994 * 109.47153 * 57.92802 * 1 2 3 29 29 H 1.09000 * 109.47252 * 177.93585 * 1 2 3 30 30 H 1.09001 * 110.41235 * 359.84910 * 4 2 1 31 31 H 1.09004 * 110.41469 * 122.17393 * 4 2 1 32 32 H 1.08003 * 119.92728 * 0.04362 * 6 5 4 33 33 H 1.08002 * 120.08138 * 180.28460 * 7 6 5 34 34 H 1.07996 * 119.89174 * 179.54326 * 8 7 6 35 35 H 1.08003 * 119.85611 * 179.97438 * 9 8 7 36 36 H 1.09002 * 109.47152 * 60.00245 * 14 12 11 37 37 H 1.09001 * 109.46980 * 300.00345 * 14 12 11 38 38 H 1.08991 * 109.47334 * 300.00247 * 18 15 14 39 39 H 1.09006 * 109.46416 * 60.00412 * 18 15 14 40 40 H 0.96998 * 120.00282 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9075 1.0225 0.0000 4 6 2.0633 -0.7675 -1.2208 5 6 2.8593 -1.9112 -0.6335 6 6 3.5669 -2.9296 -1.2430 7 6 4.2379 -3.8641 -0.4765 8 6 4.1869 -3.7865 0.9033 9 6 3.4771 -2.7760 1.5156 10 6 2.8052 -1.8224 0.7482 11 7 2.0384 -0.7297 1.1646 12 6 1.8059 -0.3936 2.4489 13 8 1.1296 0.5793 2.7082 14 6 2.3860 -1.2266 3.5627 15 16 1.8973 -0.5229 5.1616 16 8 2.5004 0.7567 5.2965 17 8 0.4880 -0.6435 5.2976 18 6 2.6895 -1.6620 6.3302 19 6 2.3872 -1.2254 7.7405 20 1 1.7790 -0.3504 7.9163 21 6 2.8871 -1.9429 8.8064 22 7 3.6273 -3.0087 8.5924 23 14 2.5118 -1.4021 10.5546 24 1 1.0428 -1.4136 10.7718 25 1 3.1614 -2.3339 11.5112 26 1 3.0334 -0.0287 10.7706 27 1 -0.3633 0.4814 0.9080 28 1 -0.3633 0.5456 -0.8708 29 1 -0.3634 -1.0270 -0.0370 30 1 1.2370 -1.1482 -1.8212 31 1 2.7053 -0.1249 -1.8232 32 1 3.6071 -2.9878 -2.3207 33 1 4.7944 -4.6569 -0.9540 34 1 4.7047 -4.5204 1.5031 35 1 3.4408 -2.7212 2.5937 36 1 3.4732 -1.2313 3.4845 37 1 2.0117 -2.2474 3.4857 38 1 2.3063 -2.6699 6.1715 39 1 3.7679 -1.6539 6.1710 40 1 3.9793 -3.5133 9.3423 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864091882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:31 Heat of formation + Delta-G solvation = -66.582564 kcal Electronic energy + Delta-G solvation = -25259.597137 eV Core-core repulsion = 21553.109333 eV Total energy + Delta-G solvation = -3706.487805 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.54393 -38.99633 -36.76314 -36.01493 -35.03300 -33.69659 -33.36879 -31.17732 -30.03916 -29.91367 -29.03079 -26.71373 -23.86087 -23.35570 -22.26613 -21.66590 -19.96777 -18.05885 -17.67494 -17.02734 -16.83535 -16.35160 -16.05477 -15.53776 -15.36537 -15.21811 -14.65185 -14.54210 -14.40229 -13.93840 -13.82063 -13.37210 -13.10776 -12.91765 -12.66410 -12.51360 -12.45351 -12.18588 -12.12038 -11.81233 -11.42600 -11.35710 -11.17549 -11.11393 -11.06393 -10.88240 -10.63471 -10.51906 -10.37280 -10.22838 -9.84198 -9.15025 -9.06309 -8.72301 -8.04422 -6.35819 -4.45334 0.77455 0.99895 1.10742 2.38462 2.47937 3.25130 3.26584 3.32514 3.53540 3.64586 3.92824 4.15267 4.23511 4.33566 4.52834 4.66665 4.72950 4.76660 4.85716 5.00103 5.00542 5.06263 5.16906 5.19780 5.23389 5.33536 5.36096 5.42854 5.58609 5.70406 5.73365 5.89997 6.03126 6.17265 6.22062 6.31843 6.57033 6.61271 6.67484 7.13952 7.45681 7.68468 7.71296 8.56258 9.22030 10.76022 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.018965 B = 0.003661 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.022263 B = 7646.972152 C = 8863.797129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.131 3.869 3 H 0.094 0.906 4 C -0.082 4.082 5 C -0.138 4.138 6 C -0.075 4.075 7 C -0.145 4.145 8 C -0.084 4.084 9 C -0.162 4.162 10 C 0.148 3.852 11 N -0.546 5.546 12 C 0.560 3.440 13 O -0.501 6.501 14 C -0.683 4.683 15 S 2.418 3.582 16 O -0.939 6.939 17 O -0.939 6.939 18 C -0.402 4.402 19 C -0.531 4.531 20 H 0.073 0.927 21 C 0.076 3.924 22 N -0.882 5.882 23 Si 0.907 3.093 24 H -0.269 1.269 25 H -0.282 1.282 26 H -0.269 1.269 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.142 0.858 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.523 -2.908 -21.724 21.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.030 3.970 3 H 0.112 0.888 4 C -0.119 4.119 5 C -0.141 4.141 6 C -0.094 4.094 7 C -0.164 4.164 8 C -0.103 4.103 9 C -0.182 4.182 10 C 0.053 3.947 11 N -0.269 5.269 12 C 0.349 3.651 13 O -0.375 6.375 14 C -0.804 4.804 15 S 2.597 3.403 16 O -0.937 6.937 17 O -0.937 6.937 18 C -0.537 4.537 19 C -0.570 4.570 20 H 0.091 0.909 21 C -0.130 4.130 22 N -0.518 5.518 23 Si 0.732 3.268 24 H -0.193 1.193 25 H -0.207 1.207 26 H -0.194 1.194 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.159 0.841 36 H 0.178 0.822 37 H 0.178 0.822 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.636 -1.636 -21.335 21.408 hybrid contribution 0.534 -0.734 0.564 1.068 sum 1.170 -2.370 -20.772 20.939 Atomic orbital electron populations 1.22209 0.93252 1.02975 1.04066 1.21723 0.95813 0.96589 0.82911 0.88833 1.21228 0.99404 0.94538 0.96752 1.20007 1.02730 0.98780 0.92537 1.20391 0.95985 0.93195 0.99786 1.21049 1.01470 0.99949 0.93906 1.20981 0.97322 0.97080 0.94869 1.21281 1.00464 0.95298 1.01181 1.18406 0.93754 0.89014 0.93574 1.45965 1.48321 1.26556 1.06065 1.19286 0.79669 0.84279 0.81852 1.90856 1.37377 1.26785 1.82502 1.31527 1.13100 1.13561 1.22240 1.08769 0.76942 0.78542 0.76007 1.93472 1.78859 1.37521 1.83803 1.93472 1.28983 1.87409 1.83789 1.27583 1.08106 1.09469 1.08570 1.20317 1.35305 1.13889 0.87450 0.90876 1.24917 0.93845 0.94270 0.99942 1.69926 1.32706 1.16628 1.32545 0.86392 0.79303 0.79001 0.82075 1.19345 1.20717 1.19351 0.90262 0.90739 0.92011 0.88847 0.89032 0.85724 0.85526 0.84973 0.84092 0.82160 0.82176 0.89501 0.89507 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 9.06 37.16 0.34 -1.47 16 2 C 0.13 1.48 3.65 -67.53 -0.25 1.24 16 3 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.08 -0.68 6.58 -27.24 -0.18 -0.86 16 5 C -0.14 -1.40 6.23 -104.27 -0.65 -2.05 16 6 C -0.08 -0.64 10.04 -39.60 -0.40 -1.04 16 7 C -0.14 -1.21 10.06 -39.56 -0.40 -1.61 16 8 C -0.08 -0.80 10.02 -39.71 -0.40 -1.20 16 9 C -0.16 -1.86 8.88 -39.21 -0.35 -2.21 16 10 C 0.15 1.85 6.59 -83.57 -0.55 1.30 16 11 N -0.55 -7.70 2.89 -105.85 -0.31 -8.01 16 12 C 0.56 9.72 7.61 -10.98 -0.08 9.63 16 13 O -0.50 -10.37 14.53 2.55 0.04 -10.33 16 14 C -0.68 -10.81 4.11 36.01 0.15 -10.66 16 15 S 2.42 52.38 3.88 -107.50 -0.42 51.96 16 16 O -0.94 -23.28 17.95 -59.53 -1.07 -24.35 16 17 O -0.94 -23.23 17.95 -59.52 -1.07 -24.30 16 18 C -0.40 -9.35 5.56 36.00 0.20 -9.15 16 19 C -0.53 -14.61 9.13 -34.44 -0.31 -14.93 16 20 H 0.07 2.02 7.71 -52.48 -0.40 1.61 16 21 C 0.08 2.08 5.46 -17.82 -0.10 1.98 16 22 N -0.88 -24.34 13.29 55.43 0.74 -23.60 16 23 Si 0.91 20.95 29.54 -169.99 -5.02 15.92 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H 0.08 1.08 6.77 -51.93 -0.35 0.73 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.62 7.70 -51.93 -0.40 0.22 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 33 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 35 H 0.14 1.54 4.21 -52.48 -0.22 1.32 16 36 H 0.16 2.04 6.89 -51.92 -0.36 1.68 16 37 H 0.16 2.04 6.94 -51.92 -0.36 1.68 16 38 H 0.09 1.92 8.14 -51.93 -0.42 1.49 16 39 H 0.09 1.92 8.14 -51.92 -0.42 1.49 16 40 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 345.86 15.07 5.21 5.21 Total: -1.00 -36.66 345.86 -9.91 -46.57 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -5.03 Total: 1.94 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: -2.98 Total: -31.02 kcal Atomic # 7 Polarization: -32.04 SS G_CDS: 0.43 Total: -31.61 kcal Atomic # 8 Polarization: -56.88 SS G_CDS: -2.10 Total: -58.98 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 52.38 SS G_CDS: -0.42 Total: 51.96 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.66 -9.91 -46.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864091882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.018 kcal (2) G-P(sol) polarization free energy of solvation -36.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds