Wall clock time and date at job start Fri Apr 10 2020 14:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 110.26619 * 2 1 4 4 C 1.53744 * 110.29589 * 237.84126 * 2 1 3 5 5 C 1.51213 * 104.58511 * 241.06982 * 4 2 1 6 6 C 1.38183 * 130.97446 * 179.97438 * 5 4 2 7 7 C 1.38233 * 120.14530 * 179.20303 * 6 5 4 8 8 C 1.38292 * 119.83159 * 0.73861 * 7 6 5 9 9 C 1.37844 * 120.21878 * 359.56618 * 8 7 6 10 10 C 1.38560 * 108.55778 * 359.75398 * 5 4 2 11 11 N 1.39839 * 111.61571 * 0.41811 * 10 5 4 12 12 C 1.34777 * 124.97465 * 179.84538 * 11 10 5 13 13 O 1.21286 * 119.99822 * 179.69356 * 12 11 10 14 14 C 1.50703 * 120.00161 * 359.68972 * 12 11 10 15 15 S 1.81401 * 109.47002 * 180.02562 * 14 12 11 16 16 O 1.42093 * 108.58081 * 294.48895 * 15 14 12 17 17 O 1.42099 * 108.57650 * 65.51676 * 15 14 12 18 18 C 1.81406 * 101.92055 * 179.97438 * 15 14 12 19 19 C 1.50691 * 109.47099 * 179.97438 * 18 15 14 20 20 H 1.08009 * 120.00067 * 0.02562 * 19 18 15 21 21 C 1.37876 * 120.00213 * 180.02562 * 19 18 15 22 22 N 1.31509 * 119.99764 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00181 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47501 * 59.99738 * 23 21 19 25 25 H 1.48501 * 109.47092 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47075 * 299.99640 * 23 21 19 27 27 H 1.09004 * 109.46793 * 297.93115 * 1 2 3 28 28 H 1.08994 * 109.47153 * 57.92802 * 1 2 3 29 29 H 1.09000 * 109.47252 * 177.93585 * 1 2 3 30 30 H 1.09001 * 110.41235 * 359.84910 * 4 2 1 31 31 H 1.09004 * 110.41469 * 122.17393 * 4 2 1 32 32 H 1.08003 * 119.92728 * 0.04362 * 6 5 4 33 33 H 1.08002 * 120.08138 * 180.28460 * 7 6 5 34 34 H 1.07996 * 119.89174 * 179.54326 * 8 7 6 35 35 H 1.08003 * 119.85611 * 179.97438 * 9 8 7 36 36 H 1.09002 * 109.47152 * 60.00245 * 14 12 11 37 37 H 1.09001 * 109.46980 * 300.00345 * 14 12 11 38 38 H 1.08991 * 109.47334 * 300.00247 * 18 15 14 39 39 H 1.09006 * 109.46416 * 60.00412 * 18 15 14 40 40 H 0.96998 * 120.00282 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9075 1.0225 0.0000 4 6 2.0633 -0.7675 -1.2208 5 6 2.8593 -1.9112 -0.6335 6 6 3.5669 -2.9296 -1.2430 7 6 4.2379 -3.8641 -0.4765 8 6 4.1869 -3.7865 0.9033 9 6 3.4771 -2.7760 1.5156 10 6 2.8052 -1.8224 0.7482 11 7 2.0384 -0.7297 1.1646 12 6 1.8059 -0.3936 2.4489 13 8 1.1296 0.5793 2.7082 14 6 2.3860 -1.2266 3.5627 15 16 1.8973 -0.5229 5.1616 16 8 2.5004 0.7567 5.2965 17 8 0.4880 -0.6435 5.2976 18 6 2.6895 -1.6620 6.3302 19 6 2.3872 -1.2254 7.7405 20 1 1.7790 -0.3504 7.9163 21 6 2.8871 -1.9429 8.8064 22 7 3.6273 -3.0087 8.5924 23 14 2.5118 -1.4021 10.5546 24 1 1.0428 -1.4136 10.7718 25 1 3.1614 -2.3339 11.5112 26 1 3.0334 -0.0287 10.7706 27 1 -0.3633 0.4814 0.9080 28 1 -0.3633 0.5456 -0.8708 29 1 -0.3634 -1.0270 -0.0370 30 1 1.2370 -1.1482 -1.8212 31 1 2.7053 -0.1249 -1.8232 32 1 3.6071 -2.9878 -2.3207 33 1 4.7944 -4.6569 -0.9540 34 1 4.7047 -4.5204 1.5031 35 1 3.4408 -2.7212 2.5937 36 1 3.4732 -1.2313 3.4845 37 1 2.0117 -2.2474 3.4857 38 1 2.3063 -2.6699 6.1715 39 1 3.7679 -1.6539 6.1710 40 1 3.9793 -3.5133 9.3423 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864091882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:30 Heat of formation + Delta-G solvation = -92.210752 kcal Electronic energy + Delta-G solvation = -25260.708459 eV Core-core repulsion = 21553.109333 eV Total energy + Delta-G solvation = -3707.599126 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.50230 -40.10716 -37.88423 -37.63658 -36.89012 -35.41679 -34.68454 -31.95322 -31.39826 -30.90205 -30.71603 -27.45474 -25.66267 -24.53346 -23.10699 -22.43860 -20.99425 -19.78877 -19.09103 -18.66069 -17.94364 -17.52169 -17.47000 -17.08364 -16.81510 -16.35203 -16.15225 -15.74579 -15.50430 -15.26123 -14.71017 -14.45273 -14.22427 -14.08549 -14.01459 -13.78044 -13.44001 -13.42646 -13.40964 -13.02193 -12.97626 -12.95479 -12.72622 -12.62596 -12.52762 -12.21512 -12.09455 -11.83224 -11.66581 -11.53894 -11.37347 -10.99702 -10.77027 -9.76333 -8.91753 -8.41963 -6.57963 -0.95331 0.12967 0.40133 1.21996 1.38654 1.40765 1.41329 1.49672 2.03050 2.31219 2.66785 2.80333 2.91275 3.12717 3.13775 3.40041 3.53913 3.76383 3.88084 3.93679 4.06248 4.11769 4.24423 4.27983 4.42306 4.53894 4.65569 4.71725 4.72623 4.73081 4.89034 4.94422 5.04161 5.11519 5.18811 5.35841 5.41735 5.49375 5.61516 5.72148 5.94215 6.13558 6.48528 6.49259 7.12377 8.70105 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.018965 B = 0.003661 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.022263 B = 7646.972152 C = 8863.797129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 H 0.091 0.909 4 C -0.072 4.072 5 C -0.136 4.136 6 C -0.075 4.075 7 C -0.136 4.136 8 C -0.093 4.093 9 C -0.178 4.178 10 C 0.105 3.895 11 N -0.541 5.541 12 C 0.547 3.453 13 O -0.550 6.550 14 C -0.655 4.655 15 S 2.429 3.571 16 O -0.981 6.981 17 O -0.981 6.981 18 C -0.410 4.410 19 C -0.569 4.569 20 H 0.057 0.943 21 C 0.032 3.968 22 N -0.903 5.903 23 Si 0.959 3.041 24 H -0.266 1.266 25 H -0.264 1.264 26 H -0.266 1.266 27 H 0.041 0.959 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.150 0.850 35 H 0.139 0.861 36 H 0.195 0.805 37 H 0.195 0.805 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.802 -4.754 -24.489 25.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.016 3.984 3 H 0.109 0.891 4 C -0.108 4.108 5 C -0.138 4.138 6 C -0.093 4.093 7 C -0.154 4.154 8 C -0.112 4.112 9 C -0.198 4.198 10 C 0.011 3.989 11 N -0.263 5.263 12 C 0.336 3.664 13 O -0.429 6.429 14 C -0.782 4.782 15 S 2.615 3.385 16 O -0.978 6.978 17 O -0.978 6.978 18 C -0.544 4.544 19 C -0.607 4.607 20 H 0.076 0.924 21 C -0.172 4.172 22 N -0.539 5.539 23 Si 0.781 3.219 24 H -0.191 1.191 25 H -0.189 1.189 26 H -0.191 1.191 27 H 0.061 0.939 28 H 0.124 0.876 29 H 0.081 0.919 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.174 0.826 33 H 0.173 0.827 34 H 0.167 0.833 35 H 0.157 0.843 36 H 0.212 0.788 37 H 0.212 0.788 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.930 -3.503 -24.074 24.404 hybrid contribution 0.225 -0.285 1.190 1.244 sum 2.154 -3.788 -22.884 23.295 Atomic orbital electron populations 1.22180 0.93205 1.03023 1.03644 1.22054 0.96048 0.96952 0.83323 0.89132 1.21272 1.00244 0.93925 0.95394 1.20330 1.02467 0.99397 0.91634 1.20791 0.94852 0.92175 1.01486 1.21485 1.00348 1.00093 0.93480 1.21277 0.97103 0.96872 0.95919 1.21452 1.01106 0.95968 1.01322 1.18728 0.95565 0.89521 0.95046 1.45953 1.47874 1.27112 1.05356 1.19403 0.79666 0.83985 0.83334 1.90840 1.39841 1.28857 1.83362 1.31165 1.15343 1.14419 1.17312 1.07797 0.75642 0.77586 0.77430 1.93413 1.79144 1.39739 1.85552 1.93413 1.31131 1.87746 1.85533 1.27564 1.08885 1.10276 1.07687 1.20692 1.35866 1.14025 0.90160 0.92436 1.25698 0.93588 0.94330 1.03579 1.69966 1.33006 1.17112 1.33846 0.85591 0.79319 0.79014 0.77966 1.19089 1.18862 1.19097 0.93940 0.87586 0.91928 0.86573 0.86641 0.82564 0.82650 0.83254 0.84331 0.78759 0.78813 0.88514 0.88513 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 9.06 71.98 0.65 -2.78 16 2 C 0.12 2.51 3.65 45.24 0.17 2.68 16 3 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 4 C -0.07 -0.95 6.58 30.26 0.20 -0.75 16 5 C -0.14 -2.31 6.23 -19.64 -0.12 -2.43 16 6 C -0.07 -0.93 10.04 22.26 0.22 -0.71 16 7 C -0.14 -1.68 10.06 22.28 0.22 -1.45 16 8 C -0.09 -1.48 10.02 22.19 0.22 -1.26 16 9 C -0.18 -3.71 8.88 22.51 0.20 -3.51 16 10 C 0.11 2.42 6.59 38.28 0.25 2.67 16 11 N -0.54 -14.91 2.89 -607.20 -1.75 -16.66 16 12 C 0.55 19.31 7.61 87.66 0.67 19.98 16 13 O -0.55 -23.98 14.53 -0.18 0.00 -23.98 16 14 C -0.65 -20.62 4.11 71.24 0.29 -20.32 16 15 S 2.43 109.43 3.88 -56.49 -0.22 109.21 16 16 O -0.98 -51.08 17.95 -125.74 -2.26 -53.33 16 17 O -0.98 -51.02 17.95 -125.76 -2.26 -53.28 16 18 C -0.41 -19.50 5.56 71.23 0.40 -19.11 16 19 C -0.57 -32.28 9.13 25.60 0.23 -32.04 16 20 H 0.06 3.34 7.71 -2.91 -0.02 3.31 16 21 C 0.03 1.75 5.46 84.66 0.46 2.21 16 22 N -0.90 -49.83 13.29 21.45 0.28 -49.54 16 23 Si 0.96 43.07 29.54 68.60 2.03 45.09 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 27 H 0.04 1.22 6.77 -2.38 -0.02 1.20 16 28 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.12 1.05 7.70 -2.39 -0.02 1.03 16 31 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 33 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 34 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.14 2.76 4.21 -2.91 -0.01 2.75 16 36 H 0.20 4.73 6.89 -2.39 -0.02 4.71 16 37 H 0.19 4.73 6.94 -2.39 -0.02 4.71 16 38 H 0.10 4.34 8.14 -2.40 -0.02 4.32 16 39 H 0.10 4.34 8.14 -2.39 -0.02 4.32 16 40 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -83.66 345.86 0.95 -82.71 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 1.06 Total: 16.61 kcal Atomic # 6 Polarization: -60.90 SS G_CDS: 4.07 Total: -56.83 kcal Atomic # 7 Polarization: -64.73 SS G_CDS: -1.47 Total: -66.20 kcal Atomic # 8 Polarization: -126.08 SS G_CDS: -4.52 Total: -130.59 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 109.43 SS G_CDS: -0.22 Total: 109.21 kcal Total: -83.66 0.95 -82.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864091882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.504 kcal (2) G-P(sol) polarization free energy of solvation -83.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds