Wall clock time and date at job start Fri Apr 10 2020 14:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46827 * 173.20937 * 3 2 1 5 5 H 1.09004 * 109.46835 * 304.99510 * 4 3 2 6 6 C 1.52997 * 109.47316 * 185.00199 * 4 3 2 7 7 O 1.42904 * 109.46741 * 304.99731 * 6 4 3 8 8 N 1.46500 * 109.47638 * 64.99477 * 4 3 2 9 9 S 1.65591 * 120.00361 * 215.00112 * 8 4 3 10 10 O 1.42101 * 106.40500 * 311.46049 * 9 8 4 11 11 O 1.42104 * 106.40278 * 178.54374 * 9 8 4 12 12 C 1.76195 * 107.22084 * 65.00206 * 9 8 4 13 13 C 1.38233 * 120.00186 * 89.99343 * 12 9 8 14 14 C 1.38234 * 120.00037 * 179.72636 * 13 12 9 15 15 C 1.38235 * 120.00220 * 0.28719 * 14 13 12 16 16 C 1.50700 * 120.00255 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47288 * 89.99435 * 16 15 14 18 18 H 1.07997 * 119.99957 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99538 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00471 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99744 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47118 * 90.00208 * 21 19 17 23 23 H 1.48501 * 109.47253 * 210.00387 * 21 19 17 24 24 H 1.48501 * 109.46801 * 330.00167 * 21 19 17 25 25 C 1.38237 * 119.99712 * 359.94731 * 15 14 13 26 26 C 1.38234 * 120.00033 * 0.02562 * 25 15 14 27 27 H 4.44648 * 5.63374 * 179.97438 * 4 1 2 28 28 H 1.08997 * 109.47278 * 53.20747 * 3 2 1 29 29 H 1.09007 * 109.47084 * 293.20441 * 3 2 1 30 30 H 1.09006 * 109.47318 * 64.99239 * 6 4 3 31 31 H 1.08999 * 109.47508 * 185.00162 * 6 4 3 32 32 H 0.96703 * 114.00182 * 180.02562 * 7 6 4 33 33 H 0.96998 * 119.99441 * 35.00803 * 8 4 3 34 34 H 1.08002 * 120.00157 * 0.02562 * 13 12 9 35 35 H 1.07999 * 120.00009 * 180.25939 * 14 13 12 36 36 H 1.09005 * 109.47111 * 209.99797 * 16 15 14 37 37 H 1.09002 * 109.46493 * 329.99148 * 16 15 14 38 38 H 0.97001 * 120.00292 * 179.97438 * 20 19 17 39 39 H 1.08001 * 119.99643 * 180.02562 * 25 15 14 40 40 H 1.08003 * 119.99512 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4333 -0.1706 5 1 2.7205 1.8687 -1.0703 6 6 4.6801 1.4210 -0.2957 7 8 5.2449 0.7458 0.8300 8 7 2.7673 2.2316 0.9949 9 16 2.3698 3.8284 0.8096 10 8 3.4013 4.4102 0.0243 11 8 2.0125 4.3053 2.0997 12 6 0.9050 3.8914 -0.1675 13 6 -0.3349 3.8657 0.4432 14 6 -1.4841 3.9208 -0.3230 15 6 -1.3935 3.9956 -1.7004 16 6 -2.6464 4.0551 -2.5358 17 6 -3.0488 5.4935 -2.7362 18 1 -2.4563 6.2854 -2.3023 19 6 -4.1727 5.7984 -3.4742 20 7 -4.8939 4.8341 -4.0030 21 14 -4.6712 7.5814 -3.7232 22 1 -4.0249 8.1092 -4.9517 23 1 -6.1470 7.6679 -3.8640 24 1 -4.2379 8.3847 -2.5518 25 6 -0.1537 4.0164 -2.3114 26 6 0.9955 3.9618 -1.5451 27 1 -1.0503 -0.0005 -0.0001 28 1 3.0096 -0.6146 -0.8229 29 1 3.0095 -0.4041 0.9446 30 1 4.9654 0.9025 -1.2111 31 1 5.0503 2.4457 -0.3279 32 1 6.2108 0.7003 0.8174 33 1 2.7433 1.8248 1.8751 34 1 -0.4057 3.8074 1.5194 35 1 -2.4527 3.9050 0.1543 36 1 -2.4594 3.5917 -3.5046 37 1 -3.4484 3.5209 -2.0263 38 1 -5.6848 5.0487 -4.5219 39 1 -0.0829 4.0753 -3.3875 40 1 1.9641 3.9785 -2.0225 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885283838.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:12 Heat of formation + Delta-G solvation = -58.387226 kcal Electronic energy + Delta-G solvation = -24947.670692 eV Core-core repulsion = 21241.538264 eV Total energy + Delta-G solvation = -3706.132428 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -38.81745 -38.40123 -37.07791 -35.75779 -35.62230 -33.68372 -33.08532 -31.56266 -30.58080 -29.93554 -27.43587 -26.87174 -23.73356 -22.40880 -21.79776 -20.91118 -19.61732 -18.53161 -17.94163 -17.46339 -17.13510 -16.45705 -16.34747 -15.35299 -15.15985 -14.94106 -14.57034 -14.38416 -14.28641 -13.89981 -13.72064 -13.53512 -13.11971 -12.83548 -12.45042 -12.24063 -12.09087 -12.00448 -11.92785 -11.74377 -11.70251 -11.49490 -10.97044 -10.92049 -10.60676 -10.49257 -10.47445 -10.19850 -10.09762 -9.78612 -9.71074 -9.55140 -8.58529 -8.54502 -8.38007 -6.18092 -4.23080 0.51323 1.33690 1.80004 2.80631 2.86399 3.05500 3.23627 3.30252 3.34727 3.76525 3.92773 4.11962 4.24112 4.36836 4.45074 4.66066 4.83780 4.97619 5.03330 5.15670 5.20884 5.22373 5.26972 5.44185 5.59372 5.72006 5.79670 5.91167 5.91941 6.06162 6.25299 6.33022 6.50739 6.83534 6.86294 6.91012 7.28605 7.31002 7.43033 7.58418 7.65743 7.77046 8.12479 8.81758 9.41994 10.91897 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.020019 B = 0.003341 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.328199 B = 8379.936668 C = 8970.346784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.201 4.201 3 C -0.008 4.008 4 C 0.164 3.836 5 H 0.101 0.899 6 C 0.056 3.944 7 O -0.568 6.568 8 N -1.106 6.106 9 S 2.695 3.305 10 O -0.966 6.966 11 O -0.966 6.966 12 C -0.701 4.701 13 C -0.018 4.018 14 C -0.145 4.145 15 C 0.028 3.972 16 C 0.040 3.960 17 C -0.518 4.518 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.891 5.891 21 Si 0.898 3.102 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.272 1.272 25 C -0.144 4.144 26 C -0.027 4.027 27 H 0.215 0.785 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.380 0.620 33 H 0.420 0.580 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.264 0.736 39 H 0.128 0.872 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.597 -11.055 7.463 22.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.201 4.201 3 C -0.046 4.046 4 C 0.056 3.944 5 H 0.119 0.881 6 C -0.024 4.024 7 O -0.374 6.374 8 N -0.864 5.864 9 S 2.788 3.212 10 O -0.956 6.956 11 O -0.956 6.956 12 C -0.791 4.791 13 C -0.037 4.037 14 C -0.163 4.163 15 C 0.027 3.973 16 C 0.003 3.997 17 C -0.556 4.556 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.530 5.530 21 Si 0.726 3.274 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.163 4.163 26 C -0.046 4.046 27 H 0.232 0.768 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.227 0.773 33 H 0.255 0.745 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.146 0.854 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 17.293 -10.351 7.688 21.571 hybrid contribution -0.718 0.629 -0.513 1.083 sum 16.576 -9.722 7.175 20.512 Atomic orbital electron populations 1.24975 0.96013 0.99184 1.00210 1.22815 0.94244 1.01775 1.01313 1.18855 0.85139 0.95976 1.04585 1.20825 0.92794 0.92149 0.88664 0.88080 1.22816 0.93324 0.97574 0.88695 1.86439 1.25414 1.79740 1.45763 1.55542 1.84313 1.30704 1.15881 1.01640 0.74028 0.72052 0.73467 1.93549 1.55241 1.74975 1.71847 1.93566 1.84651 1.78136 1.39277 1.30286 1.17351 1.23794 1.07646 1.20733 0.91178 0.92447 0.99352 1.21220 0.98187 1.02961 0.93982 1.21091 0.97109 0.84738 0.94339 1.18528 0.88562 0.98220 0.94358 1.20974 1.10308 0.90928 1.33365 0.92295 1.24998 0.96118 0.97705 0.95287 1.69941 1.16811 1.31848 1.34380 0.86485 0.77691 0.84500 0.78771 1.20446 1.21030 1.19688 1.21216 0.91906 1.02862 1.00327 1.20749 0.99055 0.93332 0.91496 0.76816 0.88577 0.88198 0.92303 0.91464 0.77348 0.74546 0.85415 0.85437 0.94774 0.94763 0.92631 0.85444 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.21 19.25 29.55 0.57 -1.64 16 2 C -0.20 -2.26 13.05 -37.12 -0.48 -2.75 16 3 C -0.01 -0.06 5.03 -29.52 -0.15 -0.21 16 4 C 0.16 1.50 2.54 -67.93 -0.17 1.32 16 5 H 0.10 0.93 7.22 -51.93 -0.37 0.55 16 6 C 0.06 0.42 6.88 37.16 0.26 0.67 16 7 O -0.57 -3.97 12.83 -35.23 -0.45 -4.43 16 8 N -1.11 -11.69 5.12 -4.89 -0.03 -11.71 16 9 S 2.70 37.88 5.65 -107.50 -0.61 37.27 16 10 O -0.97 -15.12 16.50 -57.17 -0.94 -16.07 16 11 O -0.97 -16.10 17.28 -57.17 -0.99 -17.08 16 12 C -0.70 -11.05 5.82 -39.58 -0.23 -11.28 16 13 C -0.02 -0.29 9.52 -39.58 -0.38 -0.67 16 14 C -0.14 -2.67 9.70 -39.58 -0.38 -3.06 16 15 C 0.03 0.56 5.07 -104.62 -0.53 0.03 16 16 C 0.04 0.97 5.10 -29.04 -0.15 0.82 16 17 C -0.52 -14.00 9.09 -34.44 -0.31 -14.31 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 21 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 C -0.14 -2.64 9.70 -39.58 -0.38 -3.02 16 26 C -0.03 -0.43 8.89 -39.58 -0.35 -0.78 16 27 H 0.21 2.18 7.80 -54.08 -0.42 1.76 16 28 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.10 0.80 7.73 -51.92 -0.40 0.40 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.58 7.59 -51.93 -0.39 0.19 16 32 H 0.38 1.13 9.12 45.56 0.42 1.55 16 33 H 0.42 3.88 8.84 -34.46 -0.30 3.58 16 34 H 0.13 1.86 7.62 -52.49 -0.40 1.47 16 35 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 36 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 37 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 40 H 0.13 1.70 7.62 -52.48 -0.40 1.30 16 LS Contribution 364.78 15.07 5.50 5.50 Total: -1.00 -34.30 364.78 -8.95 -43.25 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -4.35 Total: 5.17 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: -2.80 Total: -33.28 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.71 Total: -36.41 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -2.38 Total: -37.58 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 37.88 SS G_CDS: -0.61 Total: 37.27 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.30 -8.95 -43.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885283838.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.138 kcal (2) G-P(sol) polarization free energy of solvation -34.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds