Wall clock time and date at job start Fri Apr 10 2020 14:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46827 * 173.20937 * 3 2 1 5 5 H 1.09004 * 109.46835 * 304.99510 * 4 3 2 6 6 C 1.52997 * 109.47316 * 185.00199 * 4 3 2 7 7 O 1.42904 * 109.46741 * 304.99731 * 6 4 3 8 8 N 1.46500 * 109.47638 * 64.99477 * 4 3 2 9 9 S 1.65591 * 120.00361 * 215.00112 * 8 4 3 10 10 O 1.42101 * 106.40500 * 311.46049 * 9 8 4 11 11 O 1.42104 * 106.40278 * 178.54374 * 9 8 4 12 12 C 1.76195 * 107.22084 * 65.00206 * 9 8 4 13 13 C 1.38233 * 120.00186 * 89.99343 * 12 9 8 14 14 C 1.38234 * 120.00037 * 179.72636 * 13 12 9 15 15 C 1.38235 * 120.00220 * 0.28719 * 14 13 12 16 16 C 1.50700 * 120.00255 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47288 * 89.99435 * 16 15 14 18 18 H 1.07997 * 119.99957 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99538 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00471 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99744 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47118 * 90.00208 * 21 19 17 23 23 H 1.48501 * 109.47253 * 210.00387 * 21 19 17 24 24 H 1.48501 * 109.46801 * 330.00167 * 21 19 17 25 25 C 1.38237 * 119.99712 * 359.94731 * 15 14 13 26 26 C 1.38234 * 120.00033 * 0.02562 * 25 15 14 27 27 H 4.44648 * 5.63374 * 179.97438 * 4 1 2 28 28 H 1.08997 * 109.47278 * 53.20747 * 3 2 1 29 29 H 1.09007 * 109.47084 * 293.20441 * 3 2 1 30 30 H 1.09006 * 109.47318 * 64.99239 * 6 4 3 31 31 H 1.08999 * 109.47508 * 185.00162 * 6 4 3 32 32 H 0.96703 * 114.00182 * 180.02562 * 7 6 4 33 33 H 0.96998 * 119.99441 * 35.00803 * 8 4 3 34 34 H 1.08002 * 120.00157 * 0.02562 * 13 12 9 35 35 H 1.07999 * 120.00009 * 180.25939 * 14 13 12 36 36 H 1.09005 * 109.47111 * 209.99797 * 16 15 14 37 37 H 1.09002 * 109.46493 * 329.99148 * 16 15 14 38 38 H 0.97001 * 120.00292 * 179.97438 * 20 19 17 39 39 H 1.08001 * 119.99643 * 180.02562 * 25 15 14 40 40 H 1.08003 * 119.99512 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4333 -0.1706 5 1 2.7205 1.8687 -1.0703 6 6 4.6801 1.4210 -0.2957 7 8 5.2449 0.7458 0.8300 8 7 2.7673 2.2316 0.9949 9 16 2.3698 3.8284 0.8096 10 8 3.4013 4.4102 0.0243 11 8 2.0125 4.3053 2.0997 12 6 0.9050 3.8914 -0.1675 13 6 -0.3349 3.8657 0.4432 14 6 -1.4841 3.9208 -0.3230 15 6 -1.3935 3.9956 -1.7004 16 6 -2.6464 4.0551 -2.5358 17 6 -3.0488 5.4935 -2.7362 18 1 -2.4563 6.2854 -2.3023 19 6 -4.1727 5.7984 -3.4742 20 7 -4.8939 4.8341 -4.0030 21 14 -4.6712 7.5814 -3.7232 22 1 -4.0249 8.1092 -4.9517 23 1 -6.1470 7.6679 -3.8640 24 1 -4.2379 8.3847 -2.5518 25 6 -0.1537 4.0164 -2.3114 26 6 0.9955 3.9618 -1.5451 27 1 -1.0503 -0.0005 -0.0001 28 1 3.0096 -0.6146 -0.8229 29 1 3.0095 -0.4041 0.9446 30 1 4.9654 0.9025 -1.2111 31 1 5.0503 2.4457 -0.3279 32 1 6.2108 0.7003 0.8174 33 1 2.7433 1.8248 1.8751 34 1 -0.4057 3.8074 1.5194 35 1 -2.4527 3.9050 0.1543 36 1 -2.4594 3.5917 -3.5046 37 1 -3.4484 3.5209 -2.0263 38 1 -5.6848 5.0487 -4.5219 39 1 -0.0829 4.0753 -3.3875 40 1 1.9641 3.9785 -2.0225 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885283838.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:11 Heat of formation + Delta-G solvation = -83.926238 kcal Electronic energy + Delta-G solvation = -24948.778147 eV Core-core repulsion = 21241.538264 eV Total energy + Delta-G solvation = -3707.239883 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.23447 -39.09410 -38.26013 -36.97954 -36.24043 -35.59553 -33.93961 -33.31923 -31.96167 -30.71617 -29.24727 -27.50005 -25.59539 -23.76160 -22.53339 -22.47914 -20.67896 -19.40779 -18.97755 -18.59898 -18.38364 -17.98151 -17.24418 -16.85977 -16.49146 -16.00027 -15.77627 -15.61686 -15.24906 -15.03425 -14.68501 -14.59105 -14.45658 -14.16680 -13.91868 -13.41829 -13.41564 -13.28429 -13.23465 -13.14215 -12.72882 -12.68487 -12.66427 -12.61512 -12.14894 -12.03978 -11.67974 -11.49420 -11.23729 -10.99480 -10.70607 -10.65811 -10.47289 -9.95159 -9.93537 -8.27557 -6.40256 -0.63354 -0.05435 0.40721 1.37860 1.38279 1.49686 1.93913 1.96187 2.03726 2.34372 2.56093 2.82509 3.05134 3.30535 3.42928 3.49213 3.86540 3.94991 3.96946 4.14250 4.17323 4.34100 4.41035 4.47790 4.51349 4.70278 4.82159 4.84801 4.90677 4.97327 5.10684 5.19046 5.24972 5.26016 5.28951 5.33799 5.66744 5.86769 5.92858 6.07351 6.09917 6.71588 6.79580 7.02560 7.28897 8.82427 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.020019 B = 0.003341 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.328199 B = 8379.936668 C = 8970.346784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.199 4.199 3 C -0.005 4.005 4 C 0.152 3.848 5 H 0.102 0.898 6 C 0.059 3.941 7 O -0.580 6.580 8 N -1.094 6.094 9 S 2.721 3.279 10 O -0.977 6.977 11 O -0.990 6.990 12 C -0.699 4.699 13 C -0.017 4.017 14 C -0.153 4.153 15 C 0.000 4.000 16 C 0.050 3.950 17 C -0.534 4.534 18 H 0.053 0.947 19 C 0.010 3.990 20 N -0.925 5.925 21 Si 0.963 3.037 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.269 1.269 25 C -0.153 4.153 26 C -0.020 4.020 27 H 0.218 0.782 28 H 0.121 0.879 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.397 0.603 33 H 0.428 0.572 34 H 0.148 0.852 35 H 0.127 0.873 36 H 0.013 0.987 37 H 0.012 0.988 38 H 0.267 0.733 39 H 0.130 0.870 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.025 -11.098 7.987 24.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.199 4.199 3 C -0.043 4.043 4 C 0.045 3.955 5 H 0.120 0.880 6 C -0.020 4.020 7 O -0.388 6.388 8 N -0.856 5.856 9 S 2.811 3.189 10 O -0.967 6.967 11 O -0.980 6.980 12 C -0.786 4.786 13 C -0.036 4.036 14 C -0.172 4.172 15 C -0.001 4.001 16 C 0.013 3.987 17 C -0.572 4.572 18 H 0.071 0.929 19 C -0.189 4.189 20 N -0.564 5.564 21 Si 0.788 3.212 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.193 1.193 25 C -0.171 4.171 26 C -0.039 4.039 27 H 0.234 0.766 28 H 0.139 0.861 29 H 0.127 0.873 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.247 0.753 33 H 0.265 0.735 34 H 0.166 0.834 35 H 0.145 0.855 36 H 0.032 0.968 37 H 0.031 0.969 38 H 0.076 0.924 39 H 0.148 0.852 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 19.723 -10.397 8.208 23.758 hybrid contribution -1.340 0.534 -0.615 1.568 sum 18.383 -9.863 7.593 22.201 Atomic orbital electron populations 1.25376 0.96852 1.00230 1.01430 1.23479 0.95187 1.00881 1.00331 1.19020 0.83218 0.95955 1.06101 1.21118 0.94417 0.92089 0.87855 0.88042 1.22731 0.91724 0.97518 0.90056 1.86391 1.27229 1.79505 1.45690 1.55265 1.83622 1.29639 1.17028 1.00902 0.73006 0.72643 0.72310 1.93536 1.55036 1.75993 1.72095 1.93533 1.84849 1.79394 1.40250 1.30752 1.18125 1.21759 1.07976 1.20931 0.90761 0.91655 1.00248 1.21240 0.99153 1.03353 0.93412 1.20780 0.96280 0.88159 0.94836 1.18245 0.90036 0.96603 0.93826 1.21295 1.10478 0.92176 1.33260 0.92852 1.25848 0.96107 1.01945 0.94959 1.70048 1.17325 1.33935 1.35108 0.85472 0.77532 0.79379 0.78858 1.19591 1.20350 1.19310 1.21289 0.91917 1.03121 1.00820 1.21033 0.99472 0.91819 0.91536 0.76562 0.86095 0.87256 0.89505 0.92622 0.75267 0.73491 0.83438 0.85523 0.96835 0.96949 0.92380 0.85184 0.82406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -5.18 19.25 74.32 1.43 -3.75 16 2 C -0.20 -4.14 13.05 31.13 0.41 -3.73 16 3 C -0.01 -0.07 5.03 28.79 0.14 0.07 16 4 C 0.15 2.32 2.54 44.99 0.11 2.44 16 5 H 0.10 1.55 7.22 -2.38 -0.02 1.54 16 6 C 0.06 0.68 6.88 71.98 0.50 1.18 16 7 O -0.58 -6.08 12.83 -148.98 -1.91 -7.99 16 8 N -1.09 -20.29 5.12 -169.39 -0.87 -21.16 16 9 S 2.72 70.43 5.65 -56.49 -0.32 70.11 16 10 O -0.98 -28.04 16.50 -128.00 -2.11 -30.16 16 11 O -0.99 -31.08 17.28 -128.00 -2.21 -33.29 16 12 C -0.70 -20.90 5.82 22.27 0.13 -20.77 16 13 C -0.02 -0.54 9.52 22.27 0.21 -0.33 16 14 C -0.15 -5.74 9.70 22.27 0.22 -5.53 16 15 C 0.00 -0.01 5.07 -19.87 -0.10 -0.11 16 16 C 0.05 2.54 5.10 29.10 0.15 2.69 16 17 C -0.53 -29.74 9.09 25.60 0.23 -29.51 16 18 H 0.05 2.96 7.74 -2.91 -0.02 2.93 16 19 C 0.01 0.58 5.46 84.66 0.46 1.05 16 20 N -0.92 -54.09 13.29 21.45 0.28 -53.80 16 21 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 C -0.15 -5.59 9.70 22.27 0.22 -5.37 16 26 C -0.02 -0.59 8.89 22.27 0.20 -0.40 16 27 H 0.22 4.59 7.80 -4.40 -0.03 4.55 16 28 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.11 1.38 7.73 -2.38 -0.02 1.36 16 30 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.06 0.79 7.59 -2.39 -0.02 0.77 16 32 H 0.40 1.02 9.12 -74.05 -0.68 0.35 16 33 H 0.43 6.80 8.84 -96.75 -0.85 5.94 16 34 H 0.15 4.11 7.62 -2.91 -0.02 4.09 16 35 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 36 H 0.01 0.72 8.09 -2.38 -0.02 0.70 16 37 H 0.01 0.66 8.09 -2.39 -0.02 0.64 16 38 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 39 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 40 H 0.16 3.78 7.62 -2.91 -0.02 3.76 16 Total: -1.00 -73.96 364.78 -1.26 -75.23 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -0.46 Total: 17.51 kcal Atomic # 6 Polarization: -66.38 SS G_CDS: 4.31 Total: -62.07 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -0.58 Total: -74.96 kcal Atomic # 8 Polarization: -65.21 SS G_CDS: -6.23 Total: -71.45 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 70.43 SS G_CDS: -0.32 Total: 70.11 kcal Total: -73.96 -1.26 -75.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885283838.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.700 kcal (2) G-P(sol) polarization free energy of solvation -73.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds