Wall clock time and date at job start Fri Apr 10 2020 14:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47203 * 343.56965 * 3 2 1 5 5 H 1.08998 * 109.47546 * 54.99813 * 4 3 2 6 6 C 1.53001 * 109.47422 * 175.00381 * 4 3 2 7 7 O 1.42895 * 109.47181 * 54.99259 * 6 4 3 8 8 N 1.46509 * 109.46889 * 294.99966 * 4 3 2 9 9 S 1.65604 * 119.99844 * 145.00371 * 8 4 3 10 10 O 1.42095 * 106.40018 * 311.45546 * 9 8 4 11 11 O 1.42098 * 106.39919 * 178.53897 * 9 8 4 12 12 C 1.76201 * 107.21824 * 64.99985 * 9 8 4 13 13 C 1.38234 * 120.00103 * 90.00267 * 12 9 8 14 14 C 1.38238 * 119.99675 * 180.27958 * 13 12 9 15 15 C 1.38229 * 120.00124 * 359.45911 * 14 13 12 16 16 C 1.50699 * 120.00230 * 180.28369 * 15 14 13 17 17 C 1.50691 * 109.47261 * 270.27992 * 16 15 14 18 18 H 1.08000 * 120.00158 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00152 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00173 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99964 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47326 * 59.99498 * 21 19 17 23 23 H 1.48505 * 109.47298 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47404 * 299.99495 * 21 19 17 25 25 C 1.38234 * 119.99957 * 0.56005 * 15 14 13 26 26 C 1.38234 * 119.99657 * 270.01898 * 12 9 8 27 27 H 4.44642 * 5.63355 * 180.02562 * 4 1 2 28 28 H 1.08998 * 109.46855 * 223.56902 * 3 2 1 29 29 H 1.09000 * 109.47096 * 103.56949 * 3 2 1 30 30 H 1.08994 * 109.47389 * 174.99780 * 6 4 3 31 31 H 1.09003 * 109.46680 * 294.99648 * 6 4 3 32 32 H 0.96699 * 114.00560 * 180.02562 * 7 6 4 33 33 H 0.96997 * 119.99899 * 324.99944 * 8 4 3 34 34 H 1.08002 * 119.99744 * 359.97438 * 13 12 9 35 35 H 1.08004 * 119.99577 * 179.72816 * 14 13 12 36 36 H 1.09007 * 109.47085 * 30.27493 * 16 15 14 37 37 H 1.08998 * 109.47270 * 150.26989 * 16 15 14 38 38 H 0.97003 * 120.00412 * 180.02562 * 20 19 17 39 39 H 1.08001 * 120.00274 * 179.72697 * 25 15 14 40 40 H 1.07997 * 120.00460 * 359.97438 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.3827 0.4080 5 1 2.7224 -2.1380 -0.2469 6 6 4.6815 -1.4193 0.2880 7 8 5.2455 -0.3544 1.0560 8 7 2.7692 -1.6570 1.7940 9 16 2.3732 -3.1979 2.2536 10 8 1.4512 -3.6807 1.2862 11 8 2.0825 -3.1399 3.6433 12 6 3.8265 -4.1807 2.0899 13 6 4.6989 -4.3072 3.1547 14 6 5.8420 -5.0736 3.0243 15 6 6.1070 -5.7224 1.8329 16 6 7.3499 -6.5630 1.6928 17 6 8.4831 -5.7047 1.1930 18 1 8.3197 -4.6555 0.9960 19 6 9.7285 -6.2591 0.9861 20 7 9.9275 -7.5368 1.2255 21 14 11.1331 -5.1952 0.3659 22 1 11.3856 -4.0960 1.3320 23 1 12.3579 -6.0235 0.2279 24 1 10.7727 -4.6202 -0.9550 25 6 5.2348 -5.5955 0.7679 26 6 4.0944 -4.8248 0.8965 27 1 -1.0498 -0.0005 -0.0001 28 1 3.0090 0.7454 0.7083 29 1 3.0092 0.2419 -0.9990 30 1 5.0526 -2.3733 0.6624 31 1 4.9665 -1.3036 -0.7577 32 1 6.2112 -0.3162 1.0258 33 1 2.7446 -0.9360 2.4425 34 1 4.4899 -3.8033 4.0868 35 1 6.5258 -5.1688 3.8548 36 1 7.6142 -6.9851 2.6624 37 1 7.1648 -7.3698 0.9836 38 1 10.8037 -7.9268 1.0803 39 1 5.4440 -6.0989 -0.1644 40 1 3.4128 -4.7261 0.0647 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885283841.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:15 Heat of formation + Delta-G solvation = -83.219237 kcal Electronic energy + Delta-G solvation = -25040.395335 eV Core-core repulsion = 21333.186109 eV Total energy + Delta-G solvation = -3707.209225 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.26898 -39.09126 -38.29286 -36.99681 -36.22704 -35.58048 -33.96186 -33.30803 -31.96297 -30.72666 -29.24441 -27.52794 -25.57081 -23.73314 -22.58035 -22.44398 -20.67983 -19.43140 -19.03749 -18.54536 -18.37448 -18.01372 -17.21850 -16.84113 -16.49474 -15.98543 -15.85986 -15.58093 -15.27584 -15.07523 -14.70543 -14.53645 -14.45125 -14.18435 -13.86180 -13.44995 -13.40919 -13.34087 -13.21112 -13.11558 -12.78708 -12.69005 -12.62258 -12.61121 -12.10487 -12.03064 -11.68319 -11.45391 -11.27156 -11.01266 -10.76997 -10.62571 -10.48715 -9.95312 -9.91539 -8.23940 -6.37233 -0.64389 -0.06457 0.40499 1.41631 1.43415 1.51578 1.92571 1.95792 2.01966 2.36776 2.56129 2.82343 3.09174 3.28084 3.39502 3.50226 3.87310 3.92178 3.97616 4.15742 4.16503 4.33259 4.38921 4.48588 4.50762 4.66210 4.77649 4.81359 4.91818 4.95525 5.11372 5.17787 5.25406 5.27459 5.28273 5.34597 5.69170 5.87272 5.92620 6.06330 6.11035 6.74813 6.78563 6.91674 7.32003 8.86238 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.016686 B = 0.003681 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.670557 B = 7604.556352 C = 8612.941842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.209 4.209 3 C -0.005 4.005 4 C 0.153 3.847 5 H 0.110 0.890 6 C 0.052 3.948 7 O -0.576 6.576 8 N -1.095 6.095 9 S 2.720 3.280 10 O -0.980 6.980 11 O -0.988 6.988 12 C -0.697 4.697 13 C -0.016 4.016 14 C -0.153 4.153 15 C 0.000 4.000 16 C 0.046 3.954 17 C -0.529 4.529 18 H 0.062 0.938 19 C 0.006 3.994 20 N -0.930 5.930 21 Si 0.967 3.033 22 H -0.266 1.266 23 H -0.286 1.286 24 H -0.264 1.264 25 C -0.150 4.150 26 C -0.018 4.018 27 H 0.236 0.764 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.394 0.606 33 H 0.428 0.572 34 H 0.150 0.850 35 H 0.127 0.873 36 H 0.008 0.992 37 H 0.011 0.989 38 H 0.266 0.734 39 H 0.132 0.868 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.200 15.948 -3.211 20.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.209 4.209 3 C -0.043 4.043 4 C 0.046 3.954 5 H 0.128 0.872 6 C -0.028 4.028 7 O -0.383 6.383 8 N -0.856 5.856 9 S 2.811 3.189 10 O -0.970 6.970 11 O -0.979 6.979 12 C -0.785 4.785 13 C -0.035 4.035 14 C -0.172 4.172 15 C 0.000 4.000 16 C 0.009 3.991 17 C -0.566 4.566 18 H 0.080 0.920 19 C -0.193 4.193 20 N -0.569 5.569 21 Si 0.791 3.209 22 H -0.191 1.191 23 H -0.211 1.211 24 H -0.189 1.189 25 C -0.169 4.169 26 C -0.037 4.037 27 H 0.252 0.748 28 H 0.125 0.875 29 H 0.139 0.861 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.244 0.756 33 H 0.265 0.735 34 H 0.167 0.833 35 H 0.145 0.855 36 H 0.027 0.973 37 H 0.029 0.971 38 H 0.075 0.925 39 H 0.150 0.850 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.511 15.497 -2.936 21.433 hybrid contribution 2.204 -0.261 -0.079 2.221 sum -12.307 15.237 -3.015 19.817 Atomic orbital electron populations 1.25626 0.97037 0.99826 1.00965 1.23538 0.95358 1.01301 1.00716 1.18940 0.83876 0.96532 1.04963 1.21115 0.93263 0.99323 0.81678 0.87181 1.22820 0.92660 0.90672 0.96628 1.86346 1.27045 1.51759 1.73182 1.55247 1.86168 1.25826 1.18382 1.00869 0.73255 0.72652 0.72160 1.93541 1.60020 1.80495 1.62975 1.93532 1.84207 1.86701 1.33439 1.30687 1.23816 1.21803 1.02191 1.20949 0.91318 0.94032 0.97206 1.21257 0.98215 0.99545 0.98161 1.20781 0.93875 0.92097 0.93231 1.18275 0.90105 0.94130 0.96542 1.21254 0.94586 0.95924 1.44871 0.91974 1.25929 1.01613 0.96269 0.95459 1.70068 1.24203 1.13231 1.49425 0.85472 0.77648 0.78483 0.79310 1.19127 1.21120 1.18856 1.21278 0.94953 1.01436 0.99212 1.21011 0.95250 0.91811 0.95635 0.74786 0.87529 0.86137 0.93608 0.90033 0.75612 0.73526 0.83276 0.85513 0.97336 0.97069 0.92522 0.85035 0.82577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.98 19.25 74.32 1.43 -2.55 16 2 C -0.21 -3.97 13.06 31.13 0.41 -3.56 16 3 C -0.01 -0.08 5.03 28.79 0.14 0.07 16 4 C 0.15 2.60 2.68 44.99 0.12 2.72 16 5 H 0.11 1.83 7.50 -2.39 -0.02 1.81 16 6 C 0.05 0.85 6.88 71.98 0.50 1.34 16 7 O -0.58 -9.18 12.83 -148.98 -1.91 -11.09 16 8 N -1.09 -21.54 5.12 -169.38 -0.87 -22.41 16 9 S 2.72 70.89 5.72 -56.49 -0.32 70.56 16 10 O -0.98 -29.38 16.62 -128.00 -2.13 -31.50 16 11 O -0.99 -30.74 17.28 -128.00 -2.21 -32.95 16 12 C -0.70 -19.90 4.95 22.27 0.11 -19.79 16 13 C -0.02 -0.48 9.52 22.27 0.21 -0.27 16 14 C -0.15 -5.50 9.70 22.27 0.22 -5.29 16 15 C 0.00 0.02 5.07 -19.87 -0.10 -0.08 16 16 C 0.05 2.31 5.10 29.10 0.15 2.46 16 17 C -0.53 -27.84 9.09 25.60 0.23 -27.61 16 18 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 19 C 0.01 0.32 5.46 84.66 0.46 0.78 16 20 N -0.93 -53.56 13.29 21.45 0.28 -53.28 16 21 Si 0.97 41.30 29.54 68.60 2.03 43.32 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.29 -12.12 7.11 99.48 0.71 -11.42 16 24 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 25 C -0.15 -5.19 9.70 22.27 0.22 -4.98 16 26 C -0.02 -0.52 8.70 22.27 0.19 -0.32 16 27 H 0.24 2.81 7.80 -4.43 -0.03 2.77 16 28 H 0.11 1.48 7.73 -2.39 -0.02 1.46 16 29 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.05 0.93 6.17 -2.39 -0.01 0.92 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.39 4.25 9.12 -74.06 -0.68 3.57 16 33 H 0.43 7.27 8.84 -96.74 -0.85 6.41 16 34 H 0.15 3.93 7.62 -2.91 -0.02 3.91 16 35 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 36 H 0.01 0.45 8.09 -2.38 -0.02 0.43 16 37 H 0.01 0.59 8.09 -2.39 -0.02 0.57 16 38 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 39 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 40 H 0.16 3.61 7.62 -2.91 -0.02 3.59 16 Total: -1.00 -71.51 362.90 -1.30 -72.81 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -0.46 Total: 21.62 kcal Atomic # 6 Polarization: -61.38 SS G_CDS: 4.29 Total: -57.09 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -0.58 Total: -75.68 kcal Atomic # 8 Polarization: -69.30 SS G_CDS: -6.25 Total: -75.55 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: 70.89 SS G_CDS: -0.32 Total: 70.56 kcal Total: -71.51 -1.30 -72.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885283841.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.413 kcal (2) G-P(sol) polarization free energy of solvation -71.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds