Wall clock time and date at job start Fri Apr 10 2020 14:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.05461 * 2 1 4 4 C 1.55050 * 110.02887 * 238.59349 * 2 1 3 5 5 S 1.83289 * 102.56821 * 198.27721 * 4 2 1 6 6 O 1.42099 * 109.35347 * 269.81625 * 5 4 2 7 7 O 1.42101 * 109.35311 * 136.61450 * 5 4 2 8 8 C 1.82919 * 97.01508 * 23.21576 * 5 4 2 9 9 C 1.53880 * 110.02439 * 121.40649 * 2 1 3 10 10 H 1.08996 * 109.53556 * 286.25916 * 9 2 1 11 11 N 1.46500 * 109.64777 * 46.62099 * 9 2 1 12 12 C 1.34774 * 119.99745 * 205.72776 * 11 9 2 13 13 O 1.21615 * 120.00017 * 359.97438 * 12 11 9 14 14 C 1.47433 * 120.00098 * 179.97438 * 12 11 9 15 15 C 1.39228 * 120.27801 * 5.59020 * 14 12 11 16 16 C 1.38224 * 120.08730 * 180.25049 * 15 14 12 17 17 C 1.38827 * 120.67868 * 359.49476 * 16 15 14 18 18 C 1.37595 * 120.56882 * 0.25012 * 17 16 15 19 19 C 1.40706 * 119.88353 * 0.02562 * 18 17 16 20 20 C 1.40892 * 120.33138 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00076 * 213.57797 * 20 19 18 22 22 C 1.40272 * 119.99523 * 33.57111 * 20 19 18 23 23 N 1.30630 * 120.00395 * 8.81655 * 22 20 19 24 24 Si 1.86805 * 119.99555 * 188.81961 * 22 20 19 25 25 H 1.48496 * 109.47402 * 59.99847 * 24 22 20 26 26 H 1.48501 * 109.47171 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.46898 * 299.99691 * 24 22 20 28 28 H 1.08996 * 109.46929 * 298.59530 * 1 2 3 29 29 H 1.09001 * 109.46533 * 58.59521 * 1 2 3 30 30 H 1.08998 * 109.46931 * 178.59476 * 1 2 3 31 31 H 1.09000 * 110.78821 * 80.01036 * 4 2 1 32 32 H 1.09002 * 110.79272 * 316.55024 * 4 2 1 33 33 H 1.09003 * 110.31589 * 243.21776 * 8 5 4 34 34 H 1.08998 * 110.31636 * 121.02815 * 8 5 4 35 35 H 0.96993 * 120.00370 * 25.72624 * 11 9 2 36 36 H 1.07992 * 119.95723 * 0.02562 * 15 14 12 37 37 H 1.07996 * 119.66282 * 179.76612 * 16 15 14 38 38 H 1.07995 * 119.71800 * 180.23038 * 17 16 15 39 39 H 1.08005 * 120.06067 * 179.97438 * 18 17 16 40 40 H 0.96995 * 119.99826 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0610 -0.7591 -1.2433 5 16 3.7936 -1.1300 -0.7742 6 8 4.6344 -0.0657 -1.1979 7 8 4.1040 -2.4680 -1.1385 8 6 3.5601 -1.0337 1.0375 9 6 2.0569 -0.7534 1.2340 10 1 1.9115 -0.1415 2.1242 11 7 1.3353 -2.0195 1.3833 12 6 1.2246 -2.5928 2.5980 13 8 1.7242 -2.0592 3.5700 14 6 0.4979 -3.8667 2.7486 15 6 0.0242 -4.5415 1.6266 16 6 -0.6611 -5.7330 1.7726 17 6 -0.8768 -6.2763 3.0318 18 6 -0.4162 -5.6353 4.1588 19 6 0.2794 -4.4182 4.0382 20 6 0.7557 -3.7541 5.1859 21 1 0.7839 -2.6748 5.2126 22 6 1.1930 -4.4948 6.2939 23 7 1.3223 -5.7915 6.2029 24 14 1.5906 -3.6268 7.8995 25 1 0.3808 -2.9220 8.3941 26 1 2.0286 -4.6259 8.9071 27 1 2.6793 -2.6424 7.6736 28 1 -0.3633 0.4918 0.9023 29 1 -0.3632 0.5355 -0.8772 30 1 -0.3633 -1.0273 -0.0252 31 1 2.0275 -0.1235 -2.1282 32 1 1.4985 -1.6787 -1.4046 33 1 4.1544 -0.2198 1.4529 34 1 3.8331 -1.9796 1.5051 35 1 0.9371 -2.4453 0.6081 36 1 0.1894 -4.1317 0.6412 37 1 -1.0288 -6.2487 0.8979 38 1 -1.4110 -7.2100 3.1276 39 1 -0.5890 -6.0652 5.1344 40 1 1.6243 -6.3037 6.9693 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924159084.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:07 Heat of formation + Delta-G solvation = -109.683279 kcal Electronic energy + Delta-G solvation = -25625.216236 eV Core-core repulsion = 21916.859444 eV Total energy + Delta-G solvation = -3708.356792 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.03625 -39.12907 -38.13021 -37.85044 -37.06889 -35.62464 -33.94620 -32.02221 -31.58720 -30.68081 -28.58262 -27.32666 -25.24252 -23.89446 -22.75794 -21.39994 -21.11105 -19.86028 -19.36373 -18.29925 -17.75375 -17.34725 -17.06657 -16.79211 -16.53972 -15.99500 -15.80565 -15.61236 -15.27696 -14.88133 -14.68470 -14.48520 -14.15369 -13.86838 -13.65192 -13.49276 -13.40286 -13.15476 -13.10449 -12.88875 -12.84714 -12.83122 -12.50237 -12.30640 -12.21927 -12.01322 -11.89976 -11.62611 -11.46350 -11.22492 -11.13821 -10.29105 -10.06478 -9.39213 -9.22324 -8.66954 -6.35743 -0.93041 0.52434 1.03150 1.33488 1.44593 1.51257 1.56400 2.19851 2.30643 2.34800 2.61160 2.80012 3.04235 3.29279 3.48029 3.60560 3.76194 3.97673 4.12691 4.29715 4.37972 4.43919 4.55771 4.59240 4.67241 4.77370 4.83942 4.94122 5.07091 5.09712 5.13846 5.25546 5.35372 5.43429 5.59551 5.63503 5.83451 6.05987 6.12429 6.34930 6.63166 6.77943 6.92921 6.99980 7.64404 8.29780 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.015073 B = 0.004182 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.233791 B = 6694.050822 C = 7449.725748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 H 0.138 0.862 4 C -0.561 4.561 5 S 2.389 3.611 6 O -0.969 6.969 7 O -0.982 6.982 8 C -0.604 4.604 9 C 0.152 3.848 10 H 0.104 0.896 11 N -0.726 5.726 12 C 0.566 3.434 13 O -0.570 6.570 14 C -0.282 4.282 15 C -0.055 4.055 16 C -0.237 4.237 17 C -0.093 4.093 18 C -0.178 4.178 19 C 0.114 3.886 20 C -0.456 4.456 21 H 0.086 0.914 22 C 0.031 3.969 23 N -0.824 5.824 24 Si 0.978 3.022 25 H -0.256 1.256 26 H -0.263 1.263 27 H -0.273 1.273 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.179 0.821 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.119 0.881 35 H 0.407 0.593 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.570 10.150 -13.061 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 H 0.156 0.844 4 C -0.694 4.694 5 S 2.578 3.422 6 O -0.966 6.966 7 O -0.980 6.980 8 C -0.735 4.735 9 C 0.045 3.955 10 H 0.122 0.878 11 N -0.381 5.381 12 C 0.359 3.641 13 O -0.450 6.450 14 C -0.287 4.287 15 C -0.074 4.074 16 C -0.256 4.256 17 C -0.112 4.112 18 C -0.198 4.198 19 C 0.111 3.889 20 C -0.484 4.484 21 H 0.104 0.896 22 C -0.184 4.184 23 N -0.450 5.450 24 Si 0.799 3.201 25 H -0.180 1.180 26 H -0.187 1.187 27 H -0.198 1.198 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.197 0.803 32 H 0.173 0.827 33 H 0.177 0.823 34 H 0.137 0.863 35 H 0.245 0.755 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.135 0.865 39 H 0.117 0.883 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.271 10.110 -12.786 16.350 hybrid contribution -0.213 -0.316 1.368 1.420 sum -1.485 9.794 -11.418 15.116 Atomic orbital electron populations 1.21743 0.91297 1.03254 1.03489 1.22204 1.00028 1.00686 0.87746 0.84402 1.30678 1.18696 1.12211 1.07827 1.08859 0.80468 0.73889 0.79025 1.93564 1.65962 1.56719 1.80359 1.93567 1.84665 1.37788 1.81939 1.31000 1.05701 1.12111 1.24668 1.21354 0.86182 0.86239 1.01709 0.87843 1.45912 1.58221 1.24251 1.09720 1.18346 0.78688 0.84618 0.82445 1.90668 1.49752 1.65120 1.39467 1.19820 1.14055 1.00350 0.94467 1.21092 0.95071 0.94698 0.96509 1.20801 1.09012 0.99018 0.96792 1.21178 0.98253 0.98590 0.93161 1.21321 1.02200 0.98372 0.97860 1.17858 0.87705 0.91393 0.91969 1.20150 1.34870 0.95744 0.97675 0.89566 1.26807 0.93201 0.95258 1.03150 1.69744 1.34245 1.08077 1.32947 0.85317 0.79539 0.78779 0.76424 1.18033 1.18689 1.19805 0.92328 0.89151 0.92115 0.80349 0.82668 0.82270 0.86272 0.75459 0.84784 0.85072 0.86505 0.88278 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.92 71.98 0.64 -1.05 16 2 C -0.09 -1.08 2.97 -9.79 -0.03 -1.11 16 3 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.56 -5.96 6.40 72.68 0.47 -5.49 16 5 S 2.39 48.98 6.11 -56.49 -0.34 48.64 16 6 O -0.97 -24.66 18.15 -127.49 -2.31 -26.98 16 7 O -0.98 -29.21 18.15 -127.49 -2.31 -31.52 16 8 C -0.60 -13.77 6.93 72.38 0.50 -13.27 16 9 C 0.15 3.41 2.58 45.68 0.12 3.53 16 10 H 0.10 2.65 7.55 -2.39 -0.02 2.63 16 11 N -0.73 -20.81 4.18 -442.51 -1.85 -22.66 16 12 C 0.57 24.01 7.69 86.67 0.67 24.67 16 13 O -0.57 -28.57 13.22 -4.08 -0.05 -28.62 16 14 C -0.28 -13.07 5.92 -19.70 -0.12 -13.18 16 15 C -0.06 -2.09 9.52 22.50 0.21 -1.88 16 16 C -0.24 -8.96 10.03 22.41 0.22 -8.74 16 17 C -0.09 -3.97 10.01 22.26 0.22 -3.75 16 18 C -0.18 -9.05 8.62 22.72 0.20 -8.85 16 19 C 0.11 6.14 5.52 -21.11 -0.12 6.02 16 20 C -0.46 -25.54 7.71 23.41 0.18 -25.36 16 21 H 0.09 5.01 5.87 -2.91 -0.02 4.99 16 22 C 0.03 1.61 5.26 85.37 0.45 2.06 16 23 N -0.82 -43.88 11.08 21.88 0.24 -43.64 16 24 Si 0.98 41.11 29.57 68.60 2.03 43.14 16 25 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 26 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 27 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.82 6.79 -2.39 -0.02 0.80 16 31 H 0.18 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.16 1.28 7.58 -2.39 -0.02 1.26 16 33 H 0.16 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.12 3.46 8.04 -2.39 -0.02 3.44 16 35 H 0.41 9.20 4.97 -92.71 -0.46 8.74 16 36 H 0.13 3.75 6.43 -2.91 -0.02 3.73 16 37 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 38 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 39 H 0.10 5.30 6.54 -2.91 -0.02 5.28 16 40 H 0.29 13.96 8.29 -92.71 -0.77 13.19 16 Total: -1.00 -79.46 338.75 -0.37 -79.82 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.62 Total: 28.22 kcal Atomic # 6 Polarization: -50.03 SS G_CDS: 3.62 Total: -46.41 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: -1.61 Total: -66.29 kcal Atomic # 8 Polarization: -82.44 SS G_CDS: -4.68 Total: -87.12 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 16 Polarization: 48.98 SS G_CDS: -0.34 Total: 48.64 kcal Total: -79.46 -0.37 -79.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924159084.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.858 kcal (2) G-P(sol) polarization free energy of solvation -79.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds