Wall clock time and date at job start Fri Apr 10 2020 14:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.28668 * 124.92638 * 2 1 4 4 C 1.32518 * 117.87933 * 179.97438 * 3 2 1 5 5 C 1.34621 * 113.15391 * 0.02835 * 4 3 2 6 6 S 1.70906 * 124.92973 * 179.97438 * 2 1 3 7 7 C 1.50997 * 125.22131 * 179.97438 * 5 4 3 8 8 C 1.53281 * 108.58617 * 343.92825 * 7 5 4 9 9 C 1.53153 * 108.99310 * 49.27147 * 8 7 5 10 10 C 1.52125 * 124.20475 * 180.02562 * 4 3 2 11 11 H 1.09000 * 109.71860 * 282.31072 * 10 4 3 12 12 C 1.50706 * 109.59331 * 42.69052 * 10 4 3 13 13 O 1.21274 * 120.00042 * 118.96415 * 12 10 4 14 14 N 1.34777 * 119.99766 * 299.23951 * 12 10 4 15 15 C 1.46496 * 120.00266 * 179.97438 * 14 12 10 16 16 C 1.50699 * 109.47317 * 180.02562 * 15 14 12 17 17 O 1.21290 * 120.00343 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37110 * 119.99765 * 180.02562 * 18 16 15 20 20 H 1.07995 * 119.99472 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99926 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99878 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99609 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46921 * 90.00434 * 23 21 19 25 25 H 1.48508 * 109.46805 * 209.99834 * 23 21 19 26 26 H 1.48494 * 109.47628 * 330.00298 * 23 21 19 27 27 H 1.09003 * 109.46822 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47409 * 300.04513 * 1 2 3 29 29 H 1.09001 * 109.47478 * 60.04987 * 1 2 3 30 30 H 1.09000 * 109.62057 * 224.20255 * 7 5 4 31 31 H 1.09001 * 109.62092 * 103.66111 * 7 5 4 32 32 H 1.09000 * 109.55308 * 289.42223 * 8 7 5 33 33 H 1.08995 * 109.62885 * 169.17524 * 8 7 5 34 34 H 1.08993 * 109.47223 * 169.62653 * 9 8 7 35 35 H 1.09000 * 109.47136 * 49.61645 * 9 8 7 36 36 H 0.96999 * 120.00043 * 0.02562 * 14 12 10 37 37 H 1.09004 * 109.47212 * 300.00463 * 15 14 12 38 38 H 1.09000 * 109.46684 * 60.00307 * 15 14 12 39 39 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 40 40 H 0.97002 * 119.99686 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0549 0.0000 4 6 3.5588 0.8924 0.0005 5 6 3.9323 -0.4010 0.0004 6 16 2.4856 -1.4012 0.0006 7 6 5.3590 -0.8955 0.0003 8 6 6.2778 0.2637 -0.4018 9 6 5.9246 1.4943 0.4387 10 6 4.5619 2.0361 0.0012 11 1 4.6404 2.4570 -1.0012 12 6 4.1102 3.1039 0.9638 13 8 4.8068 3.4003 1.9113 14 7 2.9294 3.7257 0.7749 15 6 2.4899 4.7634 1.7109 16 6 1.1477 5.2946 1.2781 17 8 0.6107 4.8498 0.2856 18 7 0.5440 6.2639 1.9939 19 6 -0.6774 6.7469 1.6004 20 1 -1.1554 6.3508 0.7167 21 6 -1.3001 7.7458 2.3386 22 7 -0.7186 8.2274 3.4142 23 14 -2.9639 8.4043 1.8021 24 1 -4.0413 7.6057 2.4398 25 1 -3.0904 9.8252 2.2149 26 1 -3.0826 8.3054 0.3252 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5145 0.8895 29 1 -0.3634 0.5130 -0.8904 30 1 5.4639 -1.7107 -0.7156 31 1 5.6255 -1.2445 0.9980 32 1 6.1370 0.4912 -1.4584 33 1 7.3167 -0.0138 -0.2236 34 1 6.6843 2.2626 0.2952 35 1 5.8840 1.2157 1.4917 36 1 2.3702 3.4856 0.0195 37 1 2.4068 4.3387 2.7114 38 1 3.2167 5.5757 1.7203 39 1 0.9732 6.6194 2.7878 40 1 -1.1532 8.9250 3.9293 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343519830.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:28 Heat of formation + Delta-G solvation = -47.849586 kcal Electronic energy + Delta-G solvation = -24779.540941 eV Core-core repulsion = 21106.158210 eV Total energy + Delta-G solvation = -3673.382731 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.75140 -39.07443 -38.04086 -36.51156 -34.34561 -33.56237 -31.68887 -31.45062 -31.25259 -28.25479 -27.42196 -24.81366 -23.90308 -23.45808 -21.34078 -20.10951 -19.49718 -18.59629 -18.33254 -17.93138 -16.99037 -15.81423 -15.44611 -15.33008 -15.06053 -14.73311 -14.57289 -14.40900 -14.28679 -14.06804 -13.85445 -13.31109 -13.24152 -12.88882 -12.68670 -12.44644 -12.13059 -12.08096 -11.89241 -11.73541 -11.59125 -11.39450 -11.10352 -11.09121 -10.73734 -10.42923 -10.27566 -9.74556 -9.58091 -9.54900 -9.30387 -8.61912 -8.61404 -8.53579 -8.04061 -6.46571 -3.88176 0.59951 1.19711 1.58501 2.58995 2.93973 3.14649 3.24035 3.29251 3.51706 3.81205 3.86086 4.15322 4.42566 4.57775 4.67552 4.80668 4.83135 4.96810 5.14746 5.18089 5.21810 5.23983 5.29245 5.37230 5.47748 5.58444 5.69076 5.80720 5.82734 5.90704 5.98355 6.04223 6.08756 6.14684 6.16041 6.84673 7.50513 7.69050 7.96655 8.00087 8.51608 8.59100 9.10147 9.45700 9.94474 10.70653 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.018104 B = 0.003143 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.210235 B = 8906.485799 C =10153.264909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.065 3.935 3 N -0.463 5.463 4 C 0.075 3.925 5 C -0.221 4.221 6 S 0.105 5.895 7 C -0.040 4.040 8 C -0.115 4.115 9 C -0.100 4.100 10 C -0.026 4.026 11 H 0.112 0.888 12 C 0.522 3.478 13 O -0.553 6.553 14 N -0.691 5.691 15 C 0.108 3.892 16 C 0.431 3.569 17 O -0.590 6.590 18 N -0.553 5.553 19 C -0.302 4.302 20 H 0.105 0.895 21 C 0.024 3.976 22 N -0.897 5.897 23 Si 0.932 3.068 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.269 1.269 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.419 0.581 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.395 0.605 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.571 -19.276 -6.674 22.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.215 4.215 3 N -0.177 5.177 4 C -0.057 4.057 5 C -0.342 4.342 6 S 0.362 5.638 7 C -0.080 4.080 8 C -0.154 4.154 9 C -0.138 4.138 10 C -0.050 4.050 11 H 0.130 0.870 12 C 0.306 3.694 13 O -0.432 6.432 14 N -0.344 5.344 15 C -0.020 4.020 16 C 0.217 3.783 17 O -0.476 6.476 18 N -0.188 5.188 19 C -0.432 4.432 20 H 0.123 0.877 21 C -0.178 4.178 22 N -0.537 5.537 23 Si 0.759 3.241 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.193 1.193 27 H 0.095 0.905 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.259 0.741 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.229 0.771 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.057 -19.762 -6.530 23.115 hybrid contribution -0.459 1.255 0.024 1.336 sum 9.597 -18.508 -6.506 21.840 Atomic orbital electron populations 1.20472 0.84863 1.03127 1.05323 1.26815 1.01654 0.90094 1.02889 1.65726 1.04242 1.32020 1.15668 1.20389 0.89327 0.92782 1.03194 1.25914 1.00014 0.95588 1.12671 1.83752 0.97446 1.13004 1.69630 1.20196 0.87018 0.98281 1.02517 1.21647 0.99090 0.94269 1.00415 1.21415 0.93877 0.97482 1.01074 1.20157 0.93144 0.90911 1.00752 0.86985 1.20064 0.81344 0.82073 0.85872 1.90671 1.55184 1.65924 1.31392 1.45704 1.20342 1.37679 1.30700 1.20945 0.95914 0.91511 0.93617 1.19757 0.87541 0.84280 0.86728 1.90508 1.66824 1.61970 1.28289 1.41795 1.18833 1.32615 1.25579 1.19720 0.94776 1.17495 1.11205 0.87744 1.25305 1.00064 0.96821 0.95611 1.69619 1.39384 1.28417 1.16305 0.85828 0.81302 0.77839 0.79139 1.20333 1.20850 1.19346 0.90493 0.88951 0.88960 0.90273 0.89932 0.91202 0.90288 0.89967 0.90237 0.74100 0.90197 0.89987 0.77132 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.47 36.01 0.38 -0.44 16 2 C 0.06 0.83 7.38 -13.60 -0.10 0.73 16 3 N -0.46 -7.11 8.86 -7.33 -0.06 -7.18 16 4 C 0.07 1.03 6.21 -82.87 -0.51 0.51 16 5 C -0.22 -2.51 6.39 -35.44 -0.23 -2.73 16 6 S 0.10 1.08 23.16 -107.50 -2.49 -1.41 16 7 C -0.04 -0.33 6.28 -27.59 -0.17 -0.50 16 8 C -0.12 -0.89 5.95 -26.51 -0.16 -1.04 16 9 C -0.10 -1.07 4.60 -26.64 -0.12 -1.20 16 10 C -0.03 -0.34 2.89 -92.20 -0.27 -0.61 16 11 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 12 C 0.52 8.99 7.11 -10.98 -0.08 8.92 16 13 O -0.55 -10.80 15.84 5.56 0.09 -10.71 16 14 N -0.69 -12.91 5.10 -61.47 -0.31 -13.22 16 15 C 0.11 2.15 6.15 -5.20 -0.03 2.12 16 16 C 0.43 10.35 7.85 -10.99 -0.09 10.26 16 17 O -0.59 -15.69 15.24 5.55 0.08 -15.61 16 18 N -0.55 -14.12 5.29 -10.96 -0.06 -14.17 16 19 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 22 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 23 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 28 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.97 7.77 -51.93 -0.40 0.57 16 36 H 0.42 8.13 6.35 -40.82 -0.26 7.87 16 37 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 39 H 0.40 9.73 7.90 -40.82 -0.32 9.41 16 40 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 350.87 15.07 5.29 5.29 Total: -1.00 -32.91 350.87 -8.53 -41.44 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -5.14 Total: 15.36 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -1.62 Total: 8.05 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.29 Total: -58.22 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: 0.17 Total: -26.32 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.49 Total: -1.41 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.91 -8.53 -41.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343519830.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.410 kcal (2) G-P(sol) polarization free energy of solvation -32.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds