Wall clock time and date at job start Fri Apr 10 2020 14:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.28668 * 124.92638 * 2 1 4 4 C 1.32518 * 117.87933 * 179.97438 * 3 2 1 5 5 C 1.34621 * 113.15391 * 0.02835 * 4 3 2 6 6 S 1.70906 * 124.92973 * 179.97438 * 2 1 3 7 7 C 1.50997 * 125.22131 * 179.97438 * 5 4 3 8 8 C 1.53281 * 108.58617 * 343.92825 * 7 5 4 9 9 C 1.53153 * 108.99310 * 49.27147 * 8 7 5 10 10 C 1.52125 * 124.20475 * 180.02562 * 4 3 2 11 11 H 1.09000 * 109.71860 * 282.31072 * 10 4 3 12 12 C 1.50706 * 109.59331 * 42.69052 * 10 4 3 13 13 O 1.21274 * 120.00042 * 118.96415 * 12 10 4 14 14 N 1.34777 * 119.99766 * 299.23951 * 12 10 4 15 15 C 1.46496 * 120.00266 * 179.97438 * 14 12 10 16 16 C 1.50699 * 109.47317 * 180.02562 * 15 14 12 17 17 O 1.21290 * 120.00343 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37110 * 119.99765 * 180.02562 * 18 16 15 20 20 H 1.07995 * 119.99472 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99926 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99878 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99609 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46921 * 90.00434 * 23 21 19 25 25 H 1.48508 * 109.46805 * 209.99834 * 23 21 19 26 26 H 1.48494 * 109.47628 * 330.00298 * 23 21 19 27 27 H 1.09003 * 109.46822 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47409 * 300.04513 * 1 2 3 29 29 H 1.09001 * 109.47478 * 60.04987 * 1 2 3 30 30 H 1.09000 * 109.62057 * 224.20255 * 7 5 4 31 31 H 1.09001 * 109.62092 * 103.66111 * 7 5 4 32 32 H 1.09000 * 109.55308 * 289.42223 * 8 7 5 33 33 H 1.08995 * 109.62885 * 169.17524 * 8 7 5 34 34 H 1.08993 * 109.47223 * 169.62653 * 9 8 7 35 35 H 1.09000 * 109.47136 * 49.61645 * 9 8 7 36 36 H 0.96999 * 120.00043 * 0.02562 * 14 12 10 37 37 H 1.09004 * 109.47212 * 300.00463 * 15 14 12 38 38 H 1.09000 * 109.46684 * 60.00307 * 15 14 12 39 39 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 40 40 H 0.97002 * 119.99686 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0549 0.0000 4 6 3.5588 0.8924 0.0005 5 6 3.9323 -0.4010 0.0004 6 16 2.4856 -1.4012 0.0006 7 6 5.3590 -0.8955 0.0003 8 6 6.2778 0.2637 -0.4018 9 6 5.9246 1.4943 0.4387 10 6 4.5619 2.0361 0.0012 11 1 4.6404 2.4570 -1.0012 12 6 4.1102 3.1039 0.9638 13 8 4.8068 3.4003 1.9113 14 7 2.9294 3.7257 0.7749 15 6 2.4899 4.7634 1.7109 16 6 1.1477 5.2946 1.2781 17 8 0.6107 4.8498 0.2856 18 7 0.5440 6.2639 1.9939 19 6 -0.6774 6.7469 1.6004 20 1 -1.1554 6.3508 0.7167 21 6 -1.3001 7.7458 2.3386 22 7 -0.7186 8.2274 3.4142 23 14 -2.9639 8.4043 1.8021 24 1 -4.0413 7.6057 2.4398 25 1 -3.0904 9.8252 2.2149 26 1 -3.0826 8.3054 0.3252 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5145 0.8895 29 1 -0.3634 0.5130 -0.8904 30 1 5.4639 -1.7107 -0.7156 31 1 5.6255 -1.2445 0.9980 32 1 6.1370 0.4912 -1.4584 33 1 7.3167 -0.0138 -0.2236 34 1 6.6843 2.2626 0.2952 35 1 5.8840 1.2157 1.4917 36 1 2.3702 3.4856 0.0195 37 1 2.4068 4.3387 2.7114 38 1 3.2167 5.5757 1.7203 39 1 0.9732 6.6194 2.7878 40 1 -1.1532 8.9250 3.9293 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343519830.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:28 Heat of formation + Delta-G solvation = -70.968623 kcal Electronic energy + Delta-G solvation = -24780.543457 eV Core-core repulsion = 21106.158210 eV Total energy + Delta-G solvation = -3674.385248 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.81592 -40.55461 -39.76499 -37.38819 -36.23758 -35.27191 -33.39456 -32.53335 -32.32801 -29.47020 -28.71733 -26.57674 -24.97692 -24.42577 -22.22152 -21.41302 -21.36116 -20.09898 -19.45399 -19.29702 -18.33306 -17.31528 -16.99794 -16.85799 -16.42327 -16.12625 -15.90887 -15.66525 -15.45760 -15.18041 -15.03682 -14.75145 -14.42053 -13.93731 -13.79172 -13.65274 -13.55518 -13.40477 -13.26128 -12.92826 -12.87520 -12.74417 -12.47002 -12.18537 -12.13490 -11.80783 -11.57959 -11.51634 -11.06821 -10.55790 -10.49848 -10.18172 -10.14678 -10.07594 -9.51849 -8.51860 -6.02196 -0.29401 0.35620 0.67773 1.35112 1.41071 1.46754 1.54343 1.72727 1.89873 2.10050 2.32857 2.96282 3.10639 3.14816 3.56053 3.71403 3.82754 3.96010 4.06069 4.17241 4.27561 4.32787 4.36126 4.39320 4.39644 4.58676 4.60956 4.65868 4.92636 4.93814 5.06865 5.10351 5.12133 5.27088 5.30249 5.37284 5.41447 5.90629 6.45471 6.54904 6.78245 7.02426 7.14725 7.42743 7.93664 8.65340 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.018104 B = 0.003143 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.210235 B = 8906.485799 C =10153.264909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.033 3.967 3 N -0.505 5.505 4 C 0.041 3.959 5 C -0.217 4.217 6 S 0.168 5.832 7 C -0.043 4.043 8 C -0.107 4.107 9 C -0.097 4.097 10 C -0.021 4.021 11 H 0.125 0.875 12 C 0.520 3.480 13 O -0.579 6.579 14 N -0.696 5.696 15 C 0.120 3.880 16 C 0.434 3.566 17 O -0.618 6.618 18 N -0.560 5.560 19 C -0.337 4.337 20 H 0.085 0.915 21 C -0.011 4.011 22 N -0.917 5.917 23 Si 0.998 3.002 24 H -0.269 1.269 25 H -0.271 1.271 26 H -0.270 1.270 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.416 0.584 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.398 0.602 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.389 -21.009 -7.251 24.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.245 4.245 3 N -0.220 5.220 4 C -0.090 4.090 5 C -0.338 4.338 6 S 0.425 5.575 7 C -0.082 4.082 8 C -0.145 4.145 9 C -0.135 4.135 10 C -0.045 4.045 11 H 0.142 0.858 12 C 0.307 3.693 13 O -0.459 6.459 14 N -0.349 5.349 15 C -0.008 4.008 16 C 0.221 3.779 17 O -0.505 6.505 18 N -0.196 5.196 19 C -0.466 4.466 20 H 0.103 0.897 21 C -0.211 4.211 22 N -0.557 5.557 23 Si 0.821 3.179 24 H -0.195 1.195 25 H -0.195 1.195 26 H -0.194 1.194 27 H 0.126 0.874 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.123 0.877 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.255 0.745 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.232 0.768 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.891 -21.510 -7.096 25.132 hybrid contribution -0.677 1.714 0.225 1.856 sum 10.214 -19.796 -6.871 23.311 Atomic orbital electron populations 1.20522 0.84133 1.04828 1.04181 1.27129 1.02630 0.91224 1.03532 1.65707 1.05386 1.33982 1.16930 1.20451 0.89017 0.93789 1.05720 1.26451 1.02119 0.95188 1.10038 1.83432 0.95592 1.10466 1.67972 1.20421 0.84852 0.99094 1.03881 1.21645 1.00408 0.92390 1.00102 1.21436 0.92375 0.99094 1.00587 1.20231 0.94394 0.89769 1.00081 0.85757 1.20829 0.80228 0.82118 0.86121 1.90645 1.55715 1.66829 1.32754 1.45798 1.21048 1.37686 1.30363 1.20769 0.93708 0.92339 0.94013 1.20362 0.88452 0.83276 0.85853 1.90483 1.67947 1.62632 1.29461 1.41834 1.18665 1.33159 1.25901 1.19738 0.96136 1.19089 1.11617 0.89666 1.26145 1.03392 0.96302 0.95311 1.69688 1.40729 1.28562 1.16771 0.84856 0.76807 0.77649 0.78592 1.19481 1.19532 1.19433 0.87364 0.90676 0.89545 0.87698 0.88933 0.90402 0.87575 0.89520 0.92021 0.74473 0.89771 0.88707 0.76834 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.63 10.47 71.24 0.75 -0.89 16 2 C 0.03 0.84 7.38 88.57 0.65 1.49 16 3 N -0.51 -15.77 8.86 -177.09 -1.57 -17.34 16 4 C 0.04 1.12 6.21 42.08 0.26 1.38 16 5 C -0.22 -4.48 6.39 24.95 0.16 -4.32 16 6 S 0.17 3.11 23.16 -56.49 -1.31 1.80 16 7 C -0.04 -0.56 6.28 30.04 0.19 -0.37 16 8 C -0.11 -1.30 5.95 30.74 0.18 -1.12 16 9 C -0.10 -1.93 4.60 30.66 0.14 -1.79 16 10 C -0.02 -0.55 2.89 -11.82 -0.03 -0.59 16 11 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 12 C 0.52 18.18 7.11 87.66 0.62 18.81 16 13 O -0.58 -22.86 15.84 -3.01 -0.05 -22.91 16 14 N -0.70 -26.74 5.10 -466.79 -2.38 -29.12 16 15 C 0.12 4.90 6.15 85.63 0.53 5.42 16 16 C 0.43 21.49 7.85 87.66 0.69 22.18 16 17 O -0.62 -34.09 15.24 -3.06 -0.05 -34.14 16 18 N -0.56 -29.45 5.29 -306.98 -1.62 -31.07 16 19 C -0.34 -19.12 9.68 84.04 0.81 -18.31 16 20 H 0.09 5.09 7.16 -2.91 -0.02 5.07 16 21 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 22 N -0.92 -49.86 13.05 21.66 0.28 -49.57 16 23 Si 1.00 42.59 29.55 68.60 2.03 44.62 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 H 0.11 1.51 8.12 -2.39 -0.02 1.49 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 0.87 8.11 -2.39 -0.02 0.85 16 33 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.06 1.45 7.77 -2.39 -0.02 1.43 16 36 H 0.42 16.79 6.35 -92.71 -0.59 16.20 16 37 H 0.08 3.37 8.14 -2.38 -0.02 3.35 16 38 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 39 H 0.40 20.14 7.90 -92.71 -0.73 19.41 16 40 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -72.30 350.87 0.53 -71.77 By element: Atomic # 1 Polarization: 44.40 SS G_CDS: -0.22 Total: 44.18 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: 5.42 Total: 21.78 kcal Atomic # 7 Polarization: -121.81 SS G_CDS: -5.29 Total: -127.11 kcal Atomic # 8 Polarization: -56.96 SS G_CDS: -0.09 Total: -57.05 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -1.31 Total: 1.80 kcal Total: -72.30 0.53 -71.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343519830.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.806 kcal (2) G-P(sol) polarization free energy of solvation -72.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds