Wall clock time and date at job start Fri Apr 10 2020 14:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 119.99527 * 2 1 4 4 N 1.46496 * 109.47207 * 125.00112 * 3 2 1 5 5 C 1.30847 * 120.00137 * 119.99650 * 4 3 2 6 6 N 1.35991 * 125.51662 * 180.02562 * 5 4 3 7 7 H 0.97006 * 122.49626 * 0.26478 * 6 5 4 8 8 C 1.34678 * 114.99451 * 179.97438 * 6 5 4 9 9 C 1.33464 * 115.80564 * 359.97438 * 8 6 5 10 10 C 1.46535 * 125.19976 * 180.02562 * 9 8 6 11 11 O 1.21710 * 120.00470 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99622 * 180.02562 * 10 9 8 13 13 C 1.47025 * 125.64965 * 0.02562 * 12 10 9 14 14 C 1.54322 * 107.26919 * 181.02168 * 13 12 10 15 15 C 1.55163 * 102.94385 * 22.19183 * 14 13 12 16 16 O 1.42899 * 111.00051 * 82.56832 * 15 14 13 17 17 C 1.50693 * 111.00316 * 206.38050 * 15 14 13 18 18 H 1.08000 * 120.00483 * 354.75683 * 17 15 14 19 19 C 1.37881 * 120.00021 * 174.75140 * 17 15 14 20 20 N 1.31522 * 119.99537 * 4.93290 * 19 17 15 21 21 Si 1.86798 * 120.00277 * 184.92849 * 19 17 15 22 22 H 1.48503 * 109.46854 * 95.00095 * 21 19 17 23 23 H 1.48499 * 109.47236 * 214.99769 * 21 19 17 24 24 H 1.48500 * 109.47254 * 335.00385 * 21 19 17 25 25 C 1.47430 * 125.64663 * 179.71178 * 12 10 9 26 26 S 1.75955 * 109.59789 * 0.02562 * 9 8 6 27 27 H 1.07996 * 120.00185 * 0.02562 * 1 2 3 28 28 H 1.08007 * 119.99674 * 180.02562 * 1 2 3 29 29 H 1.07996 * 120.00185 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47298 * 4.99869 * 3 2 1 31 31 H 1.09010 * 109.46641 * 244.99818 * 3 2 1 32 32 H 1.08007 * 122.09475 * 180.02562 * 8 6 5 33 33 H 1.08996 * 109.88094 * 300.43682 * 13 12 10 34 34 H 1.08997 * 109.88166 * 61.45326 * 13 12 10 35 35 H 1.09005 * 110.71840 * 140.55353 * 14 13 12 36 36 H 1.08998 * 110.72096 * 263.82918 * 14 13 12 37 37 H 0.96702 * 113.99837 * 179.97438 * 16 15 14 38 38 H 0.97000 * 119.99464 * 179.97438 * 20 19 17 39 39 H 1.09001 * 110.36918 * 274.74797 * 25 12 10 40 40 H 1.09003 * 110.36006 * 37.07154 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.2786 1.4589 0.9191 6 7 5.2385 1.4965 1.8816 7 1 5.0318 1.4258 2.8268 8 6 6.4979 1.6330 1.4244 9 6 6.6293 1.7114 0.0986 10 6 7.8993 1.8613 -0.6170 11 8 8.9441 1.9243 0.0041 12 7 7.9102 1.9305 -1.9630 13 6 6.7272 1.8694 -2.8338 14 6 7.2260 1.9612 -4.2913 15 6 8.7035 1.4998 -4.1828 16 8 8.7960 0.0738 -4.1844 17 6 9.5374 2.0936 -5.2886 18 1 9.0668 2.6765 -6.0665 19 6 10.9014 1.8928 -5.3072 20 7 11.4622 1.1041 -4.4165 21 14 11.9528 2.7409 -6.5974 22 1 12.5030 4.0013 -6.0371 23 1 13.0699 1.8457 -6.9923 24 1 11.1214 3.0501 -7.7884 25 6 9.1100 2.0866 -2.8055 26 16 5.0445 1.6074 -0.6588 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3585 2.1316 0.0895 31 1 2.6213 1.4026 -0.9315 32 1 7.3482 1.6754 2.0889 33 1 6.2024 0.9265 -2.6804 34 1 6.0617 2.7041 -2.6141 35 1 6.6587 1.2900 -4.9361 36 1 7.1682 2.9872 -4.6548 37 1 9.7006 -0.2617 -4.1186 38 1 12.4217 0.9626 -4.4299 39 1 9.3715 3.1404 -2.9018 40 1 9.9442 1.5247 -2.3854 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592950280.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:58 Heat of formation + Delta-G solvation = -30.086452 kcal Electronic energy + Delta-G solvation = -24758.115766 eV Core-core repulsion = 21085.503302 eV Total energy + Delta-G solvation = -3672.612464 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.32872 -40.63926 -38.82543 -37.21796 -36.09518 -34.18362 -34.08314 -32.20212 -31.26742 -29.65752 -27.80299 -27.10118 -24.76654 -24.35202 -22.99675 -21.48361 -20.87302 -19.69134 -19.53334 -19.05518 -18.45122 -17.66253 -17.16255 -16.88742 -16.55160 -16.24271 -15.98465 -15.94333 -15.78612 -14.95874 -14.80335 -14.71775 -14.53827 -14.51441 -13.72300 -13.51758 -13.37977 -13.03555 -12.86748 -12.68252 -12.39172 -12.37147 -12.30193 -12.22948 -12.14322 -11.46173 -11.34840 -11.14478 -10.81064 -10.75569 -10.62798 -10.31995 -10.01227 -9.58169 -8.35660 -8.24852 -6.41150 -0.02497 0.18267 0.67147 0.99278 1.28089 1.43492 1.46422 1.56035 1.69046 2.10145 2.15032 2.40401 3.01776 3.49651 3.74951 3.84648 4.03908 4.09590 4.10509 4.16244 4.19529 4.27748 4.34249 4.44983 4.58905 4.72550 4.72659 5.01274 5.03350 5.05619 5.22841 5.31899 5.40847 5.46432 5.67141 5.76556 5.78320 5.93114 6.05340 6.56666 6.57156 6.68225 7.07603 7.29992 7.39598 8.80928 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.021998 B = 0.003160 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.548614 B = 8858.658407 C = 9743.988969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.166 4.166 3 C 0.089 3.911 4 N -0.568 5.568 5 C 0.324 3.676 6 N -0.587 5.587 7 H 0.444 0.556 8 C 0.211 3.789 9 C -0.327 4.327 10 C 0.601 3.399 11 O -0.588 6.588 12 N -0.609 5.609 13 C 0.102 3.898 14 C -0.108 4.108 15 C 0.234 3.766 16 O -0.590 6.590 17 C -0.556 4.556 18 H 0.071 0.929 19 C 0.027 3.973 20 N -0.915 5.915 21 Si 0.964 3.036 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.265 1.265 25 C 0.110 3.890 26 S 0.047 5.953 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.220 0.780 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.377 0.623 38 H 0.270 0.730 39 H 0.050 0.950 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.352 1.204 10.134 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C -0.041 4.041 4 N -0.301 5.301 5 C -0.061 4.061 6 N -0.207 5.207 7 H 0.287 0.713 8 C 0.071 3.929 9 C -0.452 4.452 10 C 0.392 3.608 11 O -0.472 6.472 12 N -0.340 5.340 13 C -0.022 4.022 14 C -0.146 4.146 15 C 0.193 3.807 16 O -0.398 6.398 17 C -0.594 4.594 18 H 0.089 0.911 19 C -0.174 4.174 20 N -0.555 5.555 21 Si 0.790 3.210 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.189 1.189 25 C -0.013 4.013 26 S 0.286 5.714 27 H 0.127 0.873 28 H 0.131 0.869 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.072 0.928 32 H 0.236 0.764 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.227 0.773 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.507 1.148 9.883 21.012 hybrid contribution 2.475 0.186 0.404 2.515 sum -16.031 1.334 10.287 19.095 Atomic orbital electron populations 1.24050 0.95080 1.03237 0.98035 1.22756 0.96504 0.97064 1.02190 1.21234 0.94974 0.97467 0.90472 1.71847 0.97878 1.28673 1.31692 1.25198 0.92388 0.96764 0.91708 1.41243 1.02520 1.66232 1.10741 0.71326 1.21108 0.88138 0.89228 0.94466 1.22478 0.96871 1.29024 0.96872 1.16729 0.87328 0.76212 0.80580 1.90767 1.34253 1.54913 1.67267 1.48513 1.10319 1.70402 1.04780 1.22129 0.87112 1.02225 0.90742 1.22620 0.95325 1.02520 0.94131 1.19878 0.92347 0.78794 0.89671 1.86074 1.33919 1.23089 1.96742 1.21791 0.92730 1.34073 1.10789 0.91114 1.25825 0.99228 0.94822 0.97535 1.69751 1.12271 1.36954 1.36478 0.85440 0.78125 0.78185 0.79267 1.20332 1.21013 1.18901 1.22891 0.86656 0.99327 0.92450 1.85691 0.96652 1.83626 1.05441 0.87255 0.86851 0.88087 0.88270 0.92812 0.76356 0.90726 0.89303 0.89469 0.88797 0.77331 0.92017 0.93183 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 14.32 67.78 0.97 -1.37 16 2 C -0.17 -3.02 9.85 25.64 0.25 -2.77 16 3 C 0.09 1.75 6.78 85.63 0.58 2.33 16 4 N -0.57 -12.76 10.63 -351.73 -3.74 -16.50 16 5 C 0.32 7.16 8.36 179.86 1.50 8.66 16 6 N -0.59 -10.09 5.56 -197.47 -1.10 -11.19 16 7 H 0.44 4.78 8.96 -92.70 -0.83 3.95 16 8 C 0.21 4.38 10.96 83.17 0.91 5.29 16 9 C -0.33 -9.52 6.28 23.35 0.15 -9.38 16 10 C 0.60 23.76 7.81 86.41 0.68 24.44 16 11 O -0.59 -26.89 17.01 -4.38 -0.07 -26.97 16 12 N -0.61 -25.20 3.33 -816.19 -2.71 -27.92 16 13 C 0.10 3.51 5.17 86.73 0.45 3.96 16 14 C -0.11 -4.11 6.12 31.78 0.19 -3.92 16 15 C 0.23 11.21 0.89 -10.07 -0.01 11.20 16 16 O -0.59 -30.39 13.20 -148.98 -1.97 -32.36 16 17 C -0.56 -28.41 8.26 25.60 0.21 -28.20 16 18 H 0.07 3.49 7.79 -2.91 -0.02 3.47 16 19 C 0.03 1.38 5.26 84.65 0.45 1.83 16 20 N -0.92 -49.22 10.71 21.45 0.23 -48.99 16 21 Si 0.96 41.14 29.54 68.60 2.03 43.17 16 22 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 23 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 25 C 0.11 5.33 5.52 86.93 0.48 5.81 16 26 S 0.05 1.18 16.70 -56.49 -0.94 0.24 16 27 H 0.11 1.27 7.84 -2.91 -0.02 1.25 16 28 H 0.11 1.28 8.06 -2.91 -0.02 1.25 16 29 H 0.10 1.96 8.06 -2.91 -0.02 1.94 16 30 H 0.10 1.70 7.79 -2.39 -0.02 1.68 16 31 H 0.05 1.09 6.21 -2.38 -0.01 1.07 16 32 H 0.22 3.47 7.97 -2.91 -0.02 3.44 16 33 H 0.07 2.50 6.81 -2.39 -0.02 2.48 16 34 H 0.09 2.60 6.96 -2.39 -0.02 2.59 16 35 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 36 H 0.09 3.27 8.03 -2.39 -0.02 3.25 16 37 H 0.38 20.42 7.18 -74.06 -0.53 19.89 16 38 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 39 H 0.05 2.50 8.04 -2.39 -0.02 2.48 16 40 H 0.05 2.69 7.50 -2.39 -0.02 2.67 16 Total: -1.00 -65.78 347.21 -1.74 -67.52 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: -0.27 Total: 35.11 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 6.81 Total: 17.88 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -7.32 Total: -104.60 kcal Atomic # 8 Polarization: -57.28 SS G_CDS: -2.04 Total: -59.32 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -0.94 Total: 0.24 kcal Total: -65.78 -1.74 -67.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592950280.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.431 kcal (2) G-P(sol) polarization free energy of solvation -65.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds