Wall clock time and date at job start Fri Apr 10 2020 14:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46857 * 129.43071 * 3 2 1 5 5 C 1.34939 * 126.03483 * 125.25923 * 4 3 2 6 6 C 1.35316 * 107.74686 * 180.14504 * 5 4 3 7 7 C 1.50696 * 126.04407 * 179.87327 * 6 5 4 8 8 N 1.46502 * 109.47553 * 269.71683 * 7 6 5 9 9 S 1.65590 * 120.00427 * 164.99890 * 8 7 6 10 10 O 1.42099 * 104.27624 * 308.92722 * 9 8 7 11 11 O 1.42103 * 104.27856 * 181.07310 * 9 8 7 12 12 C 1.81401 * 104.45090 * 65.00008 * 9 8 7 13 13 C 1.53001 * 109.47346 * 185.94654 * 12 9 8 14 14 C 1.50701 * 115.54962 * 294.26391 * 13 12 9 15 15 H 1.08002 * 120.00351 * 91.70803 * 14 13 12 16 16 C 1.37884 * 120.00011 * 271.71013 * 14 13 12 17 17 N 1.31515 * 119.99851 * 183.10679 * 16 14 13 18 18 Si 1.86792 * 119.99696 * 3.10709 * 16 14 13 19 19 H 1.48504 * 109.47226 * 265.84335 * 18 16 14 20 20 H 1.48506 * 109.47612 * 25.84424 * 18 16 14 21 21 H 1.48500 * 109.47305 * 145.84255 * 18 16 14 22 22 C 1.52996 * 117.49808 * 79.92969 * 13 12 9 23 23 C 1.52991 * 117.50106 * 148.59238 * 13 12 9 24 24 C 1.39877 * 107.91797 * 359.61166 * 6 5 4 25 25 N 1.30834 * 108.19911 * 0.23802 * 24 6 5 26 26 H 4.40645 * 5.51470 * 180.02562 * 4 1 2 27 27 H 1.09000 * 109.47297 * 9.43000 * 3 2 1 28 28 H 1.08998 * 109.47139 * 249.42563 * 3 2 1 29 29 H 1.08005 * 126.13438 * 359.97438 * 5 4 3 30 30 H 1.09000 * 109.47103 * 149.71532 * 7 6 5 31 31 H 1.09005 * 109.46989 * 29.71681 * 7 6 5 32 32 H 0.97001 * 119.99539 * 344.99909 * 8 7 6 33 33 H 1.09002 * 109.46872 * 65.94562 * 12 9 8 34 34 H 1.08998 * 109.46885 * 305.94879 * 12 9 8 35 35 H 0.96995 * 119.99652 * 179.97438 * 17 16 14 36 36 H 1.09002 * 117.50276 * 215.00584 * 22 13 12 37 37 H 1.09003 * 117.50017 * 0.02864 * 22 13 12 38 38 H 1.09000 * 117.49870 * 359.97318 * 23 13 12 39 39 H 1.09005 * 117.50333 * 144.97445 * 23 13 12 40 40 H 1.07993 * 125.90029 * 180.21965 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8782 -1.0669 5 6 3.9919 1.9088 -0.9169 6 6 4.1863 2.4644 -2.1353 7 6 5.0690 3.6471 -2.4400 8 7 4.2880 4.8815 -2.3270 9 16 5.0592 6.3442 -2.2389 10 8 6.0166 6.1737 -1.2028 11 8 4.0053 7.2891 -2.1143 12 6 5.8839 6.5186 -3.8452 13 6 6.7592 7.7734 -3.8356 14 6 6.0191 9.0813 -3.7234 15 1 5.8356 9.5165 -2.7521 16 6 5.5759 9.7225 -4.8608 17 7 4.9841 10.8933 -4.7674 18 14 5.8162 8.9282 -6.5343 19 1 7.0720 9.4324 -7.1458 20 1 5.9003 7.4541 -6.3752 21 1 4.6674 9.2665 -7.4124 22 6 8.1271 7.6754 -3.1572 23 6 8.0328 7.7529 -4.6831 24 6 3.4277 1.7431 -3.0631 25 7 2.7965 0.7920 -2.4237 26 1 -1.0502 0.0000 0.0003 27 1 3.0098 -1.0129 -0.1684 28 1 3.0092 0.3620 0.9621 29 1 4.4409 2.2340 0.0100 30 1 5.4610 3.5566 -3.4530 31 1 5.8968 3.6748 -1.7313 32 1 3.3191 4.8418 -2.3039 33 1 5.1337 6.6049 -4.6313 34 1 6.5060 5.6431 -4.0312 35 1 4.6728 11.3444 -5.5676 36 1 8.4917 8.5569 -2.6298 37 1 8.4036 6.7168 -2.7182 38 1 8.2474 6.8453 -5.2472 39 1 8.3352 8.6854 -5.1599 40 1 3.3723 1.9378 -4.1239 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882347194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:52 Heat of formation + Delta-G solvation = 66.825715 kcal Electronic energy + Delta-G solvation = -24506.054192 eV Core-core repulsion = 20837.644155 eV Total energy + Delta-G solvation = -3668.410037 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.19716 -38.79826 -37.91961 -36.79988 -36.57004 -35.40760 -34.26482 -32.73077 -31.21705 -30.00315 -28.41209 -27.57524 -25.70303 -23.30127 -22.36596 -21.49669 -21.25882 -20.14560 -19.35481 -18.58425 -18.39139 -17.85754 -17.14011 -16.95762 -16.58752 -16.36866 -15.67345 -15.52266 -15.46082 -14.87841 -14.79531 -14.63873 -14.45356 -14.21383 -13.89178 -13.72742 -13.37814 -13.16832 -12.90592 -12.85636 -12.75007 -12.65282 -12.33824 -11.99886 -11.79910 -11.70797 -11.62455 -11.52048 -11.28541 -10.94952 -10.68338 -10.47483 -10.42516 -10.03040 -9.50171 -8.29521 -6.42975 -0.49253 0.86158 1.15507 1.38435 1.40276 1.54114 1.68580 1.75646 2.21857 2.30371 2.38993 2.98528 3.03599 3.21523 3.26334 3.49061 3.70891 3.87806 3.98542 4.19201 4.23557 4.25540 4.35261 4.38862 4.42888 4.48770 4.68702 4.74918 4.80000 4.91654 4.92882 5.09165 5.11985 5.20811 5.28608 5.51073 5.65627 5.66998 6.03628 6.20509 6.22598 6.52657 6.69235 6.70958 7.29901 8.86929 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.022201 B = 0.002985 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.913275 B = 9377.687534 C = 9482.657188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.246 4.246 3 C 0.241 3.759 4 N -0.378 5.378 5 C 0.081 3.919 6 C -0.258 4.258 7 C 0.187 3.813 8 N -1.114 6.114 9 S 2.621 3.379 10 O -0.989 6.989 11 O -1.005 7.005 12 C -0.572 4.572 13 C -0.034 4.034 14 C -0.513 4.513 15 H 0.026 0.974 16 C 0.021 3.979 17 N -0.945 5.945 18 Si 0.936 3.064 19 H -0.266 1.266 20 H -0.208 1.208 21 H -0.298 1.298 22 C -0.172 4.172 23 C -0.170 4.170 24 C 0.060 3.940 25 N -0.329 5.329 26 H 0.244 0.756 27 H 0.123 0.877 28 H 0.153 0.847 29 H 0.206 0.794 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.418 0.582 33 H 0.132 0.868 34 H 0.163 0.837 35 H 0.267 0.733 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.076 0.924 40 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.842 -26.688 4.836 27.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.247 4.247 3 C 0.122 3.878 4 N -0.160 5.160 5 C -0.066 4.066 6 C -0.271 4.271 7 C 0.062 3.938 8 N -0.875 5.875 9 S 2.718 3.282 10 O -0.979 6.979 11 O -0.995 6.995 12 C -0.704 4.704 13 C -0.036 4.036 14 C -0.550 4.550 15 H 0.045 0.955 16 C -0.178 4.178 17 N -0.584 5.584 18 Si 0.758 3.242 19 H -0.191 1.191 20 H -0.130 1.130 21 H -0.225 1.225 22 C -0.209 4.209 23 C -0.208 4.208 24 C -0.127 4.127 25 N -0.149 5.149 26 H 0.261 0.739 27 H 0.141 0.859 28 H 0.170 0.830 29 H 0.222 0.778 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.252 0.748 33 H 0.150 0.850 34 H 0.180 0.820 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.095 0.905 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -1.585 -27.067 5.556 27.676 hybrid contribution -0.410 1.207 -1.084 1.673 sum -1.995 -25.860 4.472 26.319 Atomic orbital electron populations 1.25832 0.97070 0.97909 0.97424 1.23410 0.95401 1.02889 1.02968 1.18838 0.83990 0.95832 0.89108 1.48783 1.35366 1.25596 1.06232 1.23011 0.93530 0.88927 1.01177 1.20044 1.10126 1.03753 0.93207 1.19727 0.91881 0.78877 1.03358 1.55686 1.18442 1.21118 1.92266 1.04348 0.74028 0.72164 0.77617 1.93460 1.64671 1.85645 1.54126 1.93524 1.56440 1.62215 1.87288 1.30141 1.12620 1.05907 1.21725 1.18771 0.87133 0.91438 1.06292 1.20519 1.36548 1.04586 0.93376 0.95528 1.26022 0.93150 0.94570 1.04040 1.70079 1.40767 1.16560 1.30968 0.85929 0.77576 0.82949 0.77719 1.19068 1.12972 1.22472 1.23117 0.99777 1.03052 0.94972 1.23102 1.01144 1.02839 0.93721 1.24283 0.94387 0.92580 1.01458 1.77371 1.24577 1.24573 0.88392 0.73928 0.85910 0.82989 0.77771 0.88404 0.89208 0.74779 0.85022 0.81963 0.92368 0.90478 0.86462 0.86082 0.90512 0.78050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 19.25 74.32 1.43 -0.98 16 2 C -0.25 -3.95 13.52 31.13 0.42 -3.53 16 3 C 0.24 2.68 6.99 84.57 0.59 3.27 16 4 N -0.38 -6.56 3.65 -357.14 -1.30 -7.86 16 5 C 0.08 1.29 11.36 83.54 0.95 2.24 16 6 C -0.26 -4.63 5.50 -20.14 -0.11 -4.74 16 7 C 0.19 3.40 6.61 85.63 0.57 3.97 16 8 N -1.11 -27.95 5.88 -190.79 -1.12 -29.07 16 9 S 2.62 96.48 5.21 -56.49 -0.29 96.19 16 10 O -0.99 -39.10 17.50 -127.65 -2.23 -41.33 16 11 O -1.00 -49.09 17.75 -127.65 -2.27 -51.36 16 12 C -0.57 -19.43 5.52 71.98 0.40 -19.03 16 13 C -0.03 -1.46 0.77 -52.93 -0.04 -1.50 16 14 C -0.51 -29.48 8.80 25.60 0.23 -29.25 16 15 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 16 C 0.02 1.20 5.47 84.66 0.46 1.66 16 17 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 18 Si 0.94 42.03 24.90 68.60 1.71 43.74 16 19 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 20 H -0.21 -7.72 5.71 99.48 0.57 -7.15 16 21 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 22 C -0.17 -6.48 9.96 30.62 0.30 -6.17 16 23 C -0.17 -6.17 7.55 30.62 0.23 -5.94 16 24 C 0.06 1.13 11.96 85.24 1.02 2.15 16 25 N -0.33 -7.27 12.39 -57.02 -0.71 -7.98 16 26 H 0.24 1.89 7.80 -4.41 -0.03 1.85 16 27 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.15 0.61 8.07 -2.39 -0.02 0.59 16 29 H 0.21 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.09 1.56 7.69 -2.38 -0.02 1.54 16 32 H 0.42 10.08 8.61 -96.75 -0.83 9.24 16 33 H 0.13 4.41 6.76 -2.39 -0.02 4.39 16 34 H 0.16 3.63 8.09 -2.39 -0.02 3.61 16 35 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 36 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 37 H 0.12 3.59 8.14 -2.39 -0.02 3.57 16 38 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 39 H 0.08 3.03 7.23 -2.38 -0.02 3.02 16 40 H 0.20 2.79 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -89.00 361.86 0.61 -88.38 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 0.09 Total: 27.27 kcal Atomic # 6 Polarization: -64.29 SS G_CDS: 6.45 Total: -57.84 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -2.83 Total: -105.05 kcal Atomic # 8 Polarization: -88.19 SS G_CDS: -4.50 Total: -92.69 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.71 Total: 43.74 kcal Atomic # 16 Polarization: 96.48 SS G_CDS: -0.29 Total: 96.19 kcal Total: -89.00 0.61 -88.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882347194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.206 kcal (2) G-P(sol) polarization free energy of solvation -88.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds