Wall clock time and date at job start Fri Apr 10 2020 14:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47030 * 131.87829 * 3 2 1 5 5 C 1.36886 * 120.00206 * 262.98461 * 4 3 2 6 6 H 1.07999 * 120.00467 * 206.85152 * 5 4 3 7 7 C 1.39034 * 120.00208 * 26.84192 * 5 4 3 8 8 N 1.31378 * 119.99789 * 7.02575 * 7 5 4 9 9 Si 1.86797 * 120.00157 * 187.02100 * 7 5 4 10 10 H 1.48504 * 109.47327 * 90.00445 * 9 7 5 11 11 H 1.48503 * 109.47105 * 210.00148 * 9 7 5 12 12 H 1.48499 * 109.47344 * 330.00168 * 9 7 5 13 13 C 1.34782 * 119.99760 * 82.97672 * 4 3 2 14 14 O 1.21606 * 120.00093 * 5.31845 * 13 4 3 15 15 C 1.47610 * 119.99660 * 185.31460 * 13 4 3 16 16 C 1.39737 * 120.12314 * 29.06352 * 15 13 4 17 17 C 1.37805 * 119.86983 * 179.97438 * 16 15 13 18 18 C 1.38692 * 120.12677 * 0.02562 * 17 16 15 19 19 F 1.35098 * 119.87377 * 179.97438 * 18 17 16 20 20 C 1.38644 * 120.24888 * 359.97438 * 18 17 16 21 21 S 1.76206 * 119.93305 * 179.97438 * 20 18 17 22 22 C 1.81400 * 104.45068 * 294.99736 * 21 20 18 23 23 O 1.42099 * 104.27212 * 178.92517 * 21 20 18 24 24 O 1.42101 * 104.27870 * 51.07288 * 21 20 18 25 25 C 1.37837 * 120.12975 * 0.24843 * 20 18 17 26 26 H 4.40640 * 5.51399 * 179.97438 * 4 1 2 27 27 H 1.08993 * 109.47728 * 11.87984 * 3 2 1 28 28 H 1.09000 * 109.47132 * 251.87502 * 3 2 1 29 29 H 0.96996 * 119.99530 * 179.97438 * 8 7 5 30 30 H 1.07998 * 120.06560 * 359.97254 * 16 15 13 31 31 H 1.07997 * 119.93694 * 180.02562 * 17 16 15 32 32 H 1.09000 * 109.46973 * 300.00132 * 22 21 20 33 33 H 1.08994 * 109.46848 * 60.00108 * 22 21 20 34 34 H 1.09003 * 109.46880 * 179.97438 * 22 21 20 35 35 H 1.07994 * 120.06576 * 179.72093 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.9229 -1.0285 5 6 3.4988 0.4457 -2.2584 6 1 4.2305 0.9772 -2.8487 7 6 2.9275 -0.7236 -2.7479 8 7 1.9404 -1.2953 -2.0960 9 14 3.5633 -1.4816 -4.3323 10 1 4.6540 -2.4398 -4.0199 11 1 2.4571 -2.1973 -5.0174 12 1 4.0843 -0.4106 -5.2193 13 6 3.2233 2.2415 -0.7635 14 8 2.9920 2.6536 0.3569 15 6 3.6022 3.1851 -1.8335 16 6 3.2919 2.8968 -3.1651 17 6 3.6476 3.7817 -4.1598 18 6 4.3128 4.9563 -3.8414 19 9 4.6596 5.8200 -4.8206 20 6 4.6233 5.2475 -2.5219 21 16 5.4692 6.7418 -2.1268 22 6 7.0962 6.5612 -2.9083 23 8 5.5898 6.7123 -0.7112 24 8 4.7135 7.7547 -2.7766 25 6 4.2765 4.3676 -1.5192 26 1 -1.0501 -0.0003 0.0001 27 1 3.0098 -1.0047 -0.2115 28 1 3.0092 0.3205 0.9767 29 1 1.5417 -2.1108 -2.4377 30 1 2.7743 1.9823 -3.4143 31 1 3.4080 3.5602 -5.1893 32 1 7.6014 5.6869 -2.4978 33 1 6.9708 6.4368 -3.9838 34 1 7.6939 7.4517 -2.7131 35 1 4.5228 4.5933 -0.4922 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491165989.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:26 Heat of formation + Delta-G solvation = -38.293537 kcal Electronic energy + Delta-G solvation = -25275.308130 eV Core-core repulsion = 21283.442151 eV Total energy + Delta-G solvation = -3991.865979 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.062 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.17403 -39.66124 -37.69968 -37.04129 -35.93649 -35.35807 -32.20177 -31.86473 -31.12084 -30.37178 -29.61393 -26.68366 -25.21733 -23.29756 -22.89305 -20.17222 -19.01169 -18.39893 -17.64742 -17.37338 -16.68194 -16.63620 -16.26209 -15.74323 -15.63775 -15.24351 -14.68823 -14.52604 -14.12738 -13.95870 -13.58240 -13.45094 -13.40207 -13.14860 -12.67418 -12.55602 -12.15618 -12.07619 -11.98166 -11.89834 -11.76575 -11.60908 -11.30397 -11.08710 -10.91875 -10.65497 -10.53709 -9.59354 -9.45090 -9.23472 -8.84698 -8.77963 -8.52068 -8.09131 -6.62070 -4.30824 0.00819 0.81706 1.20606 2.78131 2.90775 3.01274 3.04036 3.18590 3.68095 3.75361 3.90954 4.00527 4.09037 4.19310 4.19798 4.60327 4.62408 4.75445 4.81873 4.97550 5.31818 5.44552 5.47435 5.53244 5.61806 5.78954 6.02784 6.11774 6.37465 6.55888 6.67718 6.74778 6.92156 7.07094 7.08147 7.42791 8.03527 8.72178 8.88999 9.12599 9.54930 10.34136 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.016473 B = 0.004434 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.379719 B = 6313.153070 C = 7372.376993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.099 4.099 3 C 0.242 3.758 4 N -0.426 5.426 5 C -0.354 4.354 6 H 0.105 0.895 7 C 0.042 3.958 8 N -0.844 5.844 9 Si 0.920 3.080 10 H -0.273 1.273 11 H -0.280 1.280 12 H -0.266 1.266 13 C 0.497 3.503 14 O -0.591 6.591 15 C -0.118 4.118 16 C 0.002 3.998 17 C -0.185 4.185 18 C 0.183 3.817 19 F -0.131 7.131 20 C -0.710 4.710 21 S 2.503 3.497 22 C -0.651 4.651 23 O -0.933 6.933 24 O -0.933 6.933 25 C 0.039 3.961 26 H 0.198 0.802 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.276 0.724 30 H 0.179 0.821 31 H 0.143 0.857 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.617 6.406 -5.416 11.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.101 4.101 3 C 0.120 3.880 4 N -0.142 5.142 5 C -0.481 4.481 6 H 0.122 0.878 7 C -0.166 4.166 8 N -0.479 5.479 9 Si 0.746 3.254 10 H -0.199 1.199 11 H -0.205 1.205 12 H -0.190 1.190 13 C 0.287 3.713 14 O -0.477 6.477 15 C -0.122 4.122 16 C -0.017 4.017 17 C -0.205 4.205 18 C 0.162 3.838 19 F -0.109 7.109 20 C -0.796 4.796 21 S 2.682 3.318 22 C -0.801 4.801 23 O -0.930 6.930 24 O -0.930 6.930 25 C 0.019 3.981 26 H 0.215 0.785 27 H 0.126 0.874 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.196 0.804 31 H 0.161 0.839 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.076 7.062 -4.436 10.937 hybrid contribution 0.219 -1.257 -1.761 2.175 sum 7.294 5.805 -6.197 11.194 Atomic orbital electron populations 1.24203 0.95334 1.04297 1.05092 1.23001 0.94209 0.96854 0.95998 1.18089 0.84324 0.95337 0.90249 1.43479 1.54477 1.03737 1.12531 1.19771 1.23290 1.10178 0.94868 0.87801 1.25464 0.94692 0.97187 0.99296 1.69965 1.20378 1.19017 1.38519 0.86016 0.78669 0.79742 0.80971 1.19880 1.20513 1.19047 1.17900 0.83507 0.82393 0.87542 1.90687 1.56470 1.77685 1.22829 1.20266 1.01275 0.96009 0.94674 1.22605 0.90283 0.97873 0.90900 1.21261 1.03635 0.93894 1.01693 1.17242 0.95486 0.87858 0.83195 1.91536 1.89608 1.68502 1.61298 1.30262 1.25299 1.25332 0.98747 1.05094 0.77227 0.74190 0.75303 1.30228 1.22744 1.12186 1.14934 1.93589 1.86738 1.85970 1.26702 1.93599 1.67707 1.54627 1.77057 1.20946 0.88824 0.89550 0.98752 0.78514 0.87361 0.91350 0.91321 0.80378 0.83890 0.84700 0.84959 0.84971 0.82370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.86 19.25 29.55 0.57 -5.29 16 2 C -0.10 -2.32 11.33 -37.12 -0.42 -2.74 16 3 C 0.24 5.51 5.09 -6.83 -0.03 5.48 16 4 N -0.43 -9.87 2.59 -119.09 -0.31 -10.18 16 5 C -0.35 -7.79 6.61 -15.00 -0.10 -7.89 16 6 H 0.10 2.14 5.75 -52.49 -0.30 1.84 16 7 C 0.04 0.92 5.14 -17.45 -0.09 0.83 16 8 N -0.84 -19.66 9.12 55.50 0.51 -19.15 16 9 Si 0.92 17.04 29.56 -169.99 -5.02 12.02 16 10 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 11 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 12 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 13 C 0.50 11.60 7.32 -12.43 -0.09 11.51 16 14 O -0.59 -15.24 16.36 5.27 0.09 -15.16 16 15 C -0.12 -2.35 5.47 -104.97 -0.57 -2.93 16 16 C 0.00 0.03 7.64 -39.18 -0.30 -0.27 16 17 C -0.19 -2.80 10.01 -39.57 -0.40 -3.20 16 18 C 0.18 2.74 7.20 -39.26 -0.28 2.46 16 19 F -0.13 -1.79 15.71 2.25 0.04 -1.75 16 20 C -0.71 -10.93 5.58 -39.58 -0.22 -11.15 16 21 S 2.50 32.49 5.44 -107.50 -0.58 31.90 16 22 C -0.65 -5.19 10.79 101.05 1.09 -4.10 16 23 O -0.93 -14.66 16.73 -57.54 -0.96 -15.62 16 24 O -0.93 -14.77 17.34 -57.54 -1.00 -15.76 16 25 C 0.04 0.71 9.04 -39.18 -0.35 0.35 16 26 H 0.20 3.49 7.80 -54.08 -0.42 3.07 16 27 H 0.11 2.45 6.61 -51.93 -0.34 2.11 16 28 H 0.07 1.51 7.57 -51.93 -0.39 1.11 16 29 H 0.28 6.18 8.31 -40.82 -0.34 5.84 16 30 H 0.18 3.33 5.54 -52.49 -0.29 3.04 16 31 H 0.14 1.76 8.06 -52.49 -0.42 1.33 16 32 H 0.13 0.89 8.14 -51.92 -0.42 0.46 16 33 H 0.13 0.94 7.58 -51.93 -0.39 0.55 16 34 H 0.13 0.75 8.14 -51.92 -0.42 0.32 16 35 H 0.16 2.86 7.06 -52.49 -0.37 2.49 16 LS Contribution 325.20 15.07 4.90 4.90 Total: -1.00 -31.06 325.20 -6.47 -37.53 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -2.92 Total: 8.21 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -1.20 Total: -16.94 kcal Atomic # 7 Polarization: -29.53 SS G_CDS: 0.20 Total: -29.34 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -1.87 Total: -46.54 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.02 Total: 12.02 kcal Atomic # 16 Polarization: 32.49 SS G_CDS: -0.58 Total: 31.90 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.06 -6.47 -37.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491165989.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.761 kcal (2) G-P(sol) polarization free energy of solvation -31.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds