Wall clock time and date at job start Fri Apr 10 2020 14:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47030 * 131.87829 * 3 2 1 5 5 C 1.36886 * 120.00206 * 262.98461 * 4 3 2 6 6 H 1.07999 * 120.00467 * 206.85152 * 5 4 3 7 7 C 1.39034 * 120.00208 * 26.84192 * 5 4 3 8 8 N 1.31378 * 119.99789 * 7.02575 * 7 5 4 9 9 Si 1.86797 * 120.00157 * 187.02100 * 7 5 4 10 10 H 1.48504 * 109.47327 * 90.00445 * 9 7 5 11 11 H 1.48503 * 109.47105 * 210.00148 * 9 7 5 12 12 H 1.48499 * 109.47344 * 330.00168 * 9 7 5 13 13 C 1.34782 * 119.99760 * 82.97672 * 4 3 2 14 14 O 1.21606 * 120.00093 * 5.31845 * 13 4 3 15 15 C 1.47610 * 119.99660 * 185.31460 * 13 4 3 16 16 C 1.39737 * 120.12314 * 29.06352 * 15 13 4 17 17 C 1.37805 * 119.86983 * 179.97438 * 16 15 13 18 18 C 1.38692 * 120.12677 * 0.02562 * 17 16 15 19 19 F 1.35098 * 119.87377 * 179.97438 * 18 17 16 20 20 C 1.38644 * 120.24888 * 359.97438 * 18 17 16 21 21 S 1.76206 * 119.93305 * 179.97438 * 20 18 17 22 22 C 1.81400 * 104.45068 * 294.99736 * 21 20 18 23 23 O 1.42099 * 104.27212 * 178.92517 * 21 20 18 24 24 O 1.42101 * 104.27870 * 51.07288 * 21 20 18 25 25 C 1.37837 * 120.12975 * 0.24843 * 20 18 17 26 26 H 4.40640 * 5.51399 * 179.97438 * 4 1 2 27 27 H 1.08993 * 109.47728 * 11.87984 * 3 2 1 28 28 H 1.09000 * 109.47132 * 251.87502 * 3 2 1 29 29 H 0.96996 * 119.99530 * 179.97438 * 8 7 5 30 30 H 1.07998 * 120.06560 * 359.97254 * 16 15 13 31 31 H 1.07997 * 119.93694 * 180.02562 * 17 16 15 32 32 H 1.09000 * 109.46973 * 300.00132 * 22 21 20 33 33 H 1.08994 * 109.46848 * 60.00108 * 22 21 20 34 34 H 1.09003 * 109.46880 * 179.97438 * 22 21 20 35 35 H 1.07994 * 120.06576 * 179.72093 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.9229 -1.0285 5 6 3.4988 0.4457 -2.2584 6 1 4.2305 0.9772 -2.8487 7 6 2.9275 -0.7236 -2.7479 8 7 1.9404 -1.2953 -2.0960 9 14 3.5633 -1.4816 -4.3323 10 1 4.6540 -2.4398 -4.0199 11 1 2.4571 -2.1973 -5.0174 12 1 4.0843 -0.4106 -5.2193 13 6 3.2233 2.2415 -0.7635 14 8 2.9920 2.6536 0.3569 15 6 3.6022 3.1851 -1.8335 16 6 3.2919 2.8968 -3.1651 17 6 3.6476 3.7817 -4.1598 18 6 4.3128 4.9563 -3.8414 19 9 4.6596 5.8200 -4.8206 20 6 4.6233 5.2475 -2.5219 21 16 5.4692 6.7418 -2.1268 22 6 7.0962 6.5612 -2.9083 23 8 5.5898 6.7123 -0.7112 24 8 4.7135 7.7547 -2.7766 25 6 4.2765 4.3676 -1.5192 26 1 -1.0501 -0.0003 0.0001 27 1 3.0098 -1.0047 -0.2115 28 1 3.0092 0.3205 0.9767 29 1 1.5417 -2.1108 -2.4377 30 1 2.7743 1.9823 -3.4143 31 1 3.4080 3.5602 -5.1893 32 1 7.6014 5.6869 -2.4978 33 1 6.9708 6.4368 -3.9838 34 1 7.6939 7.4517 -2.7131 35 1 4.5228 4.5933 -0.4922 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491165989.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:24 Heat of formation + Delta-G solvation = -59.051123 kcal Electronic energy + Delta-G solvation = -25276.208246 eV Core-core repulsion = 21283.442151 eV Total energy + Delta-G solvation = -3992.766095 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.062 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -50.34011 -41.25061 -39.20813 -38.16243 -37.15352 -37.05338 -33.91021 -33.52847 -32.50152 -31.79566 -30.34955 -28.39414 -26.92129 -24.60694 -24.31756 -21.70616 -20.42265 -19.75648 -19.07874 -18.76424 -18.27315 -17.91098 -17.33319 -17.12416 -16.78071 -16.47420 -16.35914 -16.08790 -15.76732 -15.23306 -15.10096 -14.66299 -14.27831 -14.12388 -13.96495 -13.96364 -13.87774 -13.43079 -13.25777 -13.19902 -13.14280 -13.03275 -12.83693 -12.54411 -12.09950 -12.07005 -11.74381 -11.28648 -11.21908 -10.65138 -10.60918 -10.43387 -9.96618 -9.84075 -8.30144 -6.05670 -0.96368 -0.50013 -0.14028 1.42242 1.50893 1.60833 1.67764 1.76648 2.01000 2.29983 2.40219 2.46406 2.76284 2.84513 2.98719 3.07946 3.23699 3.60847 3.85950 3.95946 4.05068 4.09606 4.10751 4.28932 4.46803 4.60893 4.71101 4.80836 4.90915 4.93412 5.03644 5.27399 5.37288 5.38217 5.61112 5.69190 6.30668 6.99824 7.12158 7.37247 7.79962 8.66296 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.016473 B = 0.004434 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.379719 B = 6313.153070 C = 7372.376993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.142 4.142 3 C 0.243 3.757 4 N -0.431 5.431 5 C -0.364 4.364 6 H 0.118 0.882 7 C 0.006 3.994 8 N -0.872 5.872 9 Si 0.985 3.015 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.247 1.247 13 C 0.483 3.517 14 O -0.631 6.631 15 C -0.144 4.144 16 C -0.003 4.003 17 C -0.172 4.172 18 C 0.194 3.806 19 F -0.116 7.116 20 C -0.707 4.707 21 S 2.499 3.501 22 C -0.618 4.618 23 O -0.969 6.969 24 O -0.966 6.966 25 C 0.030 3.970 26 H 0.233 0.767 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.274 0.726 30 H 0.169 0.831 31 H 0.179 0.821 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.166 0.834 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.245 7.232 -8.495 14.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.144 4.144 3 C 0.121 3.879 4 N -0.146 5.146 5 C -0.490 4.490 6 H 0.136 0.864 7 C -0.199 4.199 8 N -0.507 5.507 9 Si 0.808 3.192 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.170 1.170 13 C 0.274 3.726 14 O -0.521 6.521 15 C -0.148 4.148 16 C -0.022 4.022 17 C -0.191 4.191 18 C 0.173 3.827 19 F -0.094 7.094 20 C -0.791 4.791 21 S 2.680 3.320 22 C -0.773 4.773 23 O -0.967 6.967 24 O -0.963 6.963 25 C 0.010 3.990 26 H 0.250 0.750 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.186 0.814 31 H 0.196 0.804 32 H 0.175 0.825 33 H 0.171 0.829 34 H 0.184 0.816 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.656 7.874 -7.512 13.905 hybrid contribution -0.231 -1.428 -0.830 1.668 sum 8.424 6.445 -8.342 13.494 Atomic orbital electron populations 1.25092 0.96340 1.02673 1.03478 1.23372 0.95000 0.98417 0.97563 1.18013 0.84686 0.95057 0.90186 1.43692 1.54048 1.03880 1.13023 1.20133 1.23723 1.10525 0.94635 0.86440 1.26240 0.94534 0.97155 1.01994 1.70097 1.21478 1.19212 1.39916 0.85024 0.77594 0.79029 0.77538 1.20117 1.21256 1.16977 1.18486 0.83287 0.82863 0.87984 1.90630 1.58410 1.78386 1.24645 1.20097 1.03649 0.96322 0.94722 1.22409 0.90910 0.98376 0.90473 1.21523 1.02076 0.92953 1.02592 1.17239 0.94477 0.87799 0.83179 1.91578 1.89274 1.67993 1.60580 1.30569 1.24774 1.25298 0.98418 1.05251 0.79164 0.72770 0.74765 1.30009 1.17010 1.15039 1.15195 1.93547 1.87782 1.85900 1.29448 1.93557 1.70442 1.55095 1.77204 1.20822 0.89441 0.89691 0.99028 0.75017 0.87870 0.91913 0.91562 0.81393 0.80363 0.82470 0.82930 0.81564 0.83651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.20 19.25 74.32 1.43 -9.77 16 2 C -0.14 -6.86 11.33 31.12 0.35 -6.51 16 3 C 0.24 11.64 5.09 84.57 0.43 12.07 16 4 N -0.43 -20.76 2.59 -648.95 -1.68 -22.44 16 5 C -0.36 -16.16 6.61 84.10 0.56 -15.61 16 6 H 0.12 4.78 5.75 -2.91 -0.02 4.77 16 7 C 0.01 0.27 5.14 84.95 0.44 0.71 16 8 N -0.87 -41.15 9.12 21.68 0.20 -40.95 16 9 Si 0.99 34.04 29.56 68.60 2.03 36.07 16 10 H -0.28 -9.59 7.11 99.48 0.71 -8.88 16 11 H -0.29 -10.19 7.11 99.48 0.71 -9.48 16 12 H -0.25 -7.69 7.11 99.48 0.71 -6.98 16 13 C 0.48 23.61 7.32 86.72 0.64 24.25 16 14 O -0.63 -34.61 16.36 -4.05 -0.07 -34.68 16 15 C -0.14 -5.87 5.47 -20.09 -0.11 -5.98 16 16 C 0.00 -0.11 7.64 22.53 0.17 0.06 16 17 C -0.17 -4.72 10.01 22.28 0.22 -4.50 16 18 C 0.19 5.26 7.20 22.48 0.16 5.42 16 19 F -0.12 -2.70 15.71 44.97 0.71 -2.00 16 20 C -0.71 -20.88 5.58 22.27 0.12 -20.76 16 21 S 2.50 60.70 5.44 -56.49 -0.31 60.39 16 22 C -0.62 -6.82 10.79 113.37 1.22 -5.60 16 23 O -0.97 -30.42 16.73 -127.65 -2.14 -32.56 16 24 O -0.97 -29.19 17.34 -127.65 -2.21 -31.40 16 25 C 0.03 1.10 9.04 22.53 0.20 1.31 16 26 H 0.23 7.91 7.80 -4.41 -0.03 7.87 16 27 H 0.10 4.93 6.61 -2.39 -0.02 4.92 16 28 H 0.06 2.98 7.57 -2.39 -0.02 2.96 16 29 H 0.27 12.42 8.31 -92.71 -0.77 11.65 16 30 H 0.17 6.21 5.54 -2.91 -0.02 6.20 16 31 H 0.18 3.58 8.06 -2.91 -0.02 3.56 16 32 H 0.16 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.15 1.26 7.58 -2.39 -0.02 1.24 16 34 H 0.17 0.91 8.14 -2.39 -0.02 0.90 16 35 H 0.15 5.61 7.06 -2.91 -0.02 5.58 16 Total: -1.00 -70.49 325.20 3.52 -66.97 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 1.15 Total: 25.52 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 5.84 Total: -24.91 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -1.48 Total: -63.40 kcal Atomic # 8 Polarization: -94.23 SS G_CDS: -4.42 Total: -98.64 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.71 Total: -2.00 kcal Atomic # 14 Polarization: 34.04 SS G_CDS: 2.03 Total: 36.07 kcal Atomic # 16 Polarization: 60.70 SS G_CDS: -0.31 Total: 60.39 kcal Total: -70.49 3.52 -66.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491165989.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.919 kcal (2) G-P(sol) polarization free energy of solvation -70.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds