Wall clock time and date at job start Fri Apr 10 2020 14:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35999 * 117.00096 * 2 1 4 4 C 1.38035 * 119.98695 * 359.97438 * 3 2 1 5 5 C 1.40039 * 119.81938 * 180.02562 * 4 3 2 6 6 C 1.46865 * 120.09463 * 180.02562 * 5 4 3 7 7 O 1.21289 * 119.99931 * 174.08706 * 6 5 4 8 8 C 1.40008 * 119.80998 * 0.27237 * 5 4 3 9 9 N 1.48017 * 120.01557 * 179.70239 * 8 5 4 10 10 O 1.21799 * 119.99822 * 305.53718 * 9 8 5 11 11 O 1.21795 * 119.99802 * 125.53183 * 9 8 5 12 12 C 1.37681 * 119.97010 * 359.40474 * 8 5 4 13 13 C 1.38911 * 120.17978 * 0.62389 * 12 8 5 14 14 O 1.35749 * 119.90547 * 179.69724 * 13 12 8 15 15 C 1.42905 * 116.99790 * 359.97438 * 14 13 12 16 16 C 1.50702 * 109.47192 * 179.97438 * 15 14 13 17 17 O 1.21210 * 119.99700 * 359.97438 * 16 15 14 18 18 O 1.34312 * 119.99920 * 180.02562 * 16 15 14 19 19 C 1.34916 * 116.99792 * 180.02562 * 18 16 15 20 20 H 1.08005 * 120.00410 * 359.97438 * 19 18 16 21 21 C 1.38755 * 119.99984 * 179.97438 * 19 18 16 22 22 N 1.31439 * 119.99768 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00045 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46894 * 89.99860 * 23 21 19 25 25 H 1.48499 * 109.47513 * 210.00029 * 23 21 19 26 26 H 1.48505 * 109.47557 * 330.00600 * 23 21 19 27 27 H 1.08995 * 109.47294 * 59.99895 * 1 2 3 28 28 H 1.09002 * 109.47348 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47193 * 300.00111 * 1 2 3 30 30 H 1.07996 * 120.09345 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.99625 * 354.36365 * 6 5 4 32 32 H 1.08004 * 119.90961 * 180.31495 * 12 8 5 33 33 H 1.08990 * 109.47306 * 300.00212 * 15 14 13 34 34 H 1.09003 * 109.46727 * 59.99926 * 15 14 13 35 35 H 0.97000 * 119.99503 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2944 2.3693 -0.0005 5 6 1.9339 3.6151 -0.0011 6 6 1.1396 4.8505 -0.0011 7 8 1.6906 5.9257 0.1067 8 6 3.3324 3.6797 -0.0068 9 7 4.0130 4.9941 -0.0141 10 8 3.7451 5.8138 -0.8742 11 8 4.8407 5.2560 0.8401 12 6 4.0745 2.5200 0.0004 13 6 3.4394 1.2845 0.0004 14 8 4.1765 0.1446 0.0014 15 6 5.5980 0.2913 0.0018 16 6 6.2436 -1.0705 0.0035 17 8 5.5546 -2.0677 0.0048 18 8 7.5823 -1.1790 0.0047 19 6 8.0956 -2.4267 0.0057 20 1 7.4361 -3.2821 0.0059 21 6 9.4708 -2.6112 0.0064 22 7 10.2734 -1.5703 0.0066 23 14 10.1815 -4.3387 0.0085 24 1 10.3703 -4.7979 -1.3912 25 1 11.4909 -4.3345 0.7090 26 1 9.2482 -5.2572 0.7090 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.2159 2.3143 -0.0005 31 1 0.0646 4.8013 -0.0925 32 1 5.1533 2.5709 0.0011 33 1 5.9071 0.8391 -0.8883 34 1 5.9063 0.8403 0.8916 35 1 11.2348 -1.6993 0.0075 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730627428.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:12 Heat of formation + Delta-G solvation = -136.246564 kcal Electronic energy + Delta-G solvation = -26810.034668 eV Core-core repulsion = 22358.795467 eV Total energy + Delta-G solvation = -4451.239201 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.081 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.34611 -41.15641 -39.66518 -39.38800 -38.66025 -37.20988 -36.44601 -35.26468 -32.31663 -31.88996 -31.55205 -28.96628 -28.14610 -26.68349 -25.42519 -24.35657 -23.11183 -21.77492 -20.60589 -19.75366 -18.76310 -18.67985 -18.08810 -17.91287 -17.27364 -16.88190 -16.74716 -16.54597 -16.13843 -15.98891 -15.52065 -15.13430 -14.84394 -14.55143 -14.42037 -14.40601 -13.93246 -13.36468 -13.06486 -12.90701 -12.17250 -12.09256 -11.85422 -11.71534 -11.64260 -11.53808 -11.18692 -11.16810 -11.07180 -10.55301 -10.50396 -10.37955 -9.99532 -9.73796 -9.24459 -8.71995 -8.61857 -6.55148 -4.24484 -0.37467 0.13633 0.84148 1.20481 1.77779 2.35918 2.57351 2.80930 2.97981 3.13050 3.18948 3.28783 3.42122 3.73660 3.86121 4.11895 4.18876 4.36677 4.52958 4.60344 4.66845 4.68257 4.84031 4.93579 4.95117 5.06517 5.11222 5.18958 5.22341 5.52579 6.21719 6.27301 6.53909 6.76270 6.92625 7.25094 7.59520 7.78042 8.49608 8.92510 9.61041 10.62065 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.016227 B = 0.003006 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.132174 B = 9313.193045 C =10939.351443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.285 6.285 3 C 0.129 3.871 4 C -0.121 4.121 5 C -0.145 4.145 6 C 0.371 3.629 7 O -0.429 6.429 8 C 0.027 3.973 9 N 0.023 4.977 10 O -0.109 6.109 11 O -0.156 6.156 12 C -0.146 4.146 13 C 0.160 3.840 14 O -0.258 6.258 15 C 0.068 3.932 16 C 0.397 3.603 17 O -0.531 6.531 18 O -0.205 6.205 19 C -0.385 4.385 20 H 0.099 0.901 21 C 0.044 3.956 22 N -0.860 5.860 23 Si 0.948 3.052 24 H -0.272 1.272 25 H -0.276 1.276 26 H -0.265 1.265 27 H 0.061 0.939 28 H 0.110 0.890 29 H 0.061 0.939 30 H 0.166 0.834 31 H 0.124 0.876 32 H 0.166 0.834 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.765 8.265 -0.444 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.197 6.197 3 C 0.082 3.918 4 C -0.141 4.141 5 C -0.148 4.148 6 C 0.227 3.773 7 O -0.299 6.299 8 C -0.055 4.055 9 N 0.552 4.448 10 O -0.338 6.338 11 O -0.371 6.371 12 C -0.166 4.166 13 C 0.110 3.890 14 O -0.169 6.169 15 C -0.008 4.008 16 C 0.241 3.759 17 O -0.426 6.426 18 O -0.112 6.112 19 C -0.461 4.461 20 H 0.117 0.883 21 C -0.161 4.161 22 N -0.497 5.497 23 Si 0.772 3.228 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.189 1.189 27 H 0.080 0.920 28 H 0.128 0.872 29 H 0.079 0.921 30 H 0.183 0.817 31 H 0.140 0.860 32 H 0.183 0.817 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.667 7.512 -0.315 21.992 hybrid contribution 0.505 -0.370 -0.018 0.626 sum -20.162 7.142 -0.332 21.392 Atomic orbital electron populations 1.23291 0.77498 1.05308 1.01536 1.86388 1.21828 1.24097 1.87405 1.18281 0.89001 0.86056 0.98446 1.21167 1.00947 0.88849 1.03124 1.20415 0.90826 0.97507 1.06057 1.24043 0.95340 0.85895 0.72037 1.90724 1.75645 1.31207 1.32357 1.20707 0.91871 0.83569 1.09351 1.43261 0.99720 1.01889 0.99919 1.94555 1.66584 1.42320 1.30351 1.94580 1.27326 1.83347 1.31855 1.20743 1.02310 0.88833 1.04731 1.18247 0.88757 0.85510 0.96453 1.86275 1.18733 1.25710 1.86210 1.22076 0.77161 0.96933 1.04642 1.22109 0.83744 0.89202 0.80819 1.90628 1.64082 1.38498 1.49432 1.83825 1.17771 1.34167 1.75487 1.21286 0.90634 0.81044 1.53125 0.88292 1.25387 0.94705 1.00127 0.95832 1.69986 1.04245 1.29910 1.45526 0.85607 0.78414 0.79915 0.78878 1.19720 1.20158 1.18949 0.92007 0.87196 0.92058 0.81665 0.86019 0.81662 0.88285 0.88040 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.29 -3.09 10.27 -34.41 -0.35 -3.44 16 3 C 0.13 1.37 6.69 -39.19 -0.26 1.11 16 4 C -0.12 -0.87 8.78 -38.98 -0.34 -1.21 16 5 C -0.15 -1.37 5.87 -105.07 -0.62 -1.99 16 6 C 0.37 3.08 11.33 34.22 0.39 3.47 16 7 O -0.43 -5.63 13.94 -18.69 -0.26 -5.89 16 8 C 0.03 0.34 6.27 -79.49 -0.50 -0.16 16 9 N 0.02 0.35 3.47 34.19 0.12 0.47 16 10 O -0.11 -1.75 16.40 -37.13 -0.61 -2.36 16 11 O -0.16 -2.56 19.17 -29.46 -0.56 -3.13 16 12 C -0.15 -1.81 8.83 -39.54 -0.35 -2.16 16 13 C 0.16 2.08 6.71 -38.87 -0.26 1.82 16 14 O -0.26 -4.31 9.43 -46.64 -0.44 -4.75 16 15 C 0.07 1.15 5.33 36.01 0.19 1.34 16 16 C 0.40 9.42 7.98 36.01 0.29 9.71 16 17 O -0.53 -14.15 15.74 -25.78 -0.41 -14.56 16 18 O -0.21 -5.62 9.75 -20.69 -0.20 -5.83 16 19 C -0.39 -11.04 9.64 30.92 0.30 -10.74 16 20 H 0.10 2.85 6.86 -52.48 -0.36 2.49 16 21 C 0.04 1.21 5.49 -17.53 -0.10 1.12 16 22 N -0.86 -24.44 13.67 55.48 0.76 -23.68 16 23 Si 0.95 20.66 29.55 -169.99 -5.02 15.64 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 27 H 0.06 0.18 7.66 -51.93 -0.40 -0.21 16 28 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16 30 H 0.17 0.42 6.28 -52.49 -0.33 0.10 16 31 H 0.12 0.34 8.06 -52.49 -0.42 -0.08 16 32 H 0.17 1.93 6.27 -52.48 -0.33 1.60 16 33 H 0.10 1.42 7.65 -51.93 -0.40 1.02 16 34 H 0.10 1.47 7.65 -51.93 -0.40 1.07 16 35 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 329.99 15.07 4.97 4.97 Total: -1.00 -37.77 329.99 -4.87 -42.64 By element: Atomic # 1 Polarization: -0.90 SS G_CDS: -2.59 Total: -3.49 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -0.27 Total: 3.38 kcal Atomic # 7 Polarization: -24.09 SS G_CDS: 0.88 Total: -23.21 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -2.84 Total: -39.94 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -37.77 -4.87 -42.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730627428.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.607 kcal (2) G-P(sol) polarization free energy of solvation -37.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds