Wall clock time and date at job start Fri Apr 10 2020 14:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35999 * 117.00096 * 2 1 4 4 C 1.38035 * 119.98695 * 359.97438 * 3 2 1 5 5 C 1.40039 * 119.81938 * 180.02562 * 4 3 2 6 6 C 1.46865 * 120.09463 * 180.02562 * 5 4 3 7 7 O 1.21289 * 119.99931 * 174.08706 * 6 5 4 8 8 C 1.40008 * 119.80998 * 0.27237 * 5 4 3 9 9 N 1.48017 * 120.01557 * 179.70239 * 8 5 4 10 10 O 1.21799 * 119.99822 * 305.53718 * 9 8 5 11 11 O 1.21795 * 119.99802 * 125.53183 * 9 8 5 12 12 C 1.37681 * 119.97010 * 359.40474 * 8 5 4 13 13 C 1.38911 * 120.17978 * 0.62389 * 12 8 5 14 14 O 1.35749 * 119.90547 * 179.69724 * 13 12 8 15 15 C 1.42905 * 116.99790 * 359.97438 * 14 13 12 16 16 C 1.50702 * 109.47192 * 179.97438 * 15 14 13 17 17 O 1.21210 * 119.99700 * 359.97438 * 16 15 14 18 18 O 1.34312 * 119.99920 * 180.02562 * 16 15 14 19 19 C 1.34916 * 116.99792 * 180.02562 * 18 16 15 20 20 H 1.08005 * 120.00410 * 359.97438 * 19 18 16 21 21 C 1.38755 * 119.99984 * 179.97438 * 19 18 16 22 22 N 1.31439 * 119.99768 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00045 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46894 * 89.99860 * 23 21 19 25 25 H 1.48499 * 109.47513 * 210.00029 * 23 21 19 26 26 H 1.48505 * 109.47557 * 330.00600 * 23 21 19 27 27 H 1.08995 * 109.47294 * 59.99895 * 1 2 3 28 28 H 1.09002 * 109.47348 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47193 * 300.00111 * 1 2 3 30 30 H 1.07996 * 120.09345 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.99625 * 354.36365 * 6 5 4 32 32 H 1.08004 * 119.90961 * 180.31495 * 12 8 5 33 33 H 1.08990 * 109.47306 * 300.00212 * 15 14 13 34 34 H 1.09003 * 109.46727 * 59.99926 * 15 14 13 35 35 H 0.97000 * 119.99503 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2944 2.3693 -0.0005 5 6 1.9339 3.6151 -0.0011 6 6 1.1396 4.8505 -0.0011 7 8 1.6906 5.9257 0.1067 8 6 3.3324 3.6797 -0.0068 9 7 4.0130 4.9941 -0.0141 10 8 3.7451 5.8138 -0.8742 11 8 4.8407 5.2560 0.8401 12 6 4.0745 2.5200 0.0004 13 6 3.4394 1.2845 0.0004 14 8 4.1765 0.1446 0.0014 15 6 5.5980 0.2913 0.0018 16 6 6.2436 -1.0705 0.0035 17 8 5.5546 -2.0677 0.0048 18 8 7.5823 -1.1790 0.0047 19 6 8.0956 -2.4267 0.0057 20 1 7.4361 -3.2821 0.0059 21 6 9.4708 -2.6112 0.0064 22 7 10.2734 -1.5703 0.0066 23 14 10.1815 -4.3387 0.0085 24 1 10.3703 -4.7979 -1.3912 25 1 11.4909 -4.3345 0.7090 26 1 9.2482 -5.2572 0.7090 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.2159 2.3143 -0.0005 31 1 0.0646 4.8013 -0.0925 32 1 5.1533 2.5709 0.0011 33 1 5.9071 0.8391 -0.8883 34 1 5.9063 0.8403 0.8916 35 1 11.2348 -1.6993 0.0075 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730627428.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:11 Heat of formation + Delta-G solvation = -161.499205 kcal Electronic energy + Delta-G solvation = -26811.129705 eV Core-core repulsion = 22358.795467 eV Total energy + Delta-G solvation = -4452.334238 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.081 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.40040 -42.12756 -41.20026 -40.31455 -39.87354 -38.14874 -37.61050 -37.26122 -34.41019 -32.72914 -32.49846 -30.36891 -28.75816 -27.54439 -27.36255 -25.31898 -24.06285 -22.60385 -22.28638 -20.81898 -19.99250 -19.88605 -19.51688 -19.09540 -18.61796 -18.03313 -17.94645 -17.67507 -17.20396 -16.93739 -16.59222 -16.23817 -16.16921 -16.03972 -15.62438 -15.58026 -14.81572 -14.51296 -14.06814 -14.01614 -13.67891 -13.51840 -13.25697 -12.82939 -12.61713 -12.57244 -12.41694 -12.32190 -12.30053 -12.26114 -12.20067 -12.10146 -11.21814 -11.11855 -10.77280 -10.50715 -9.51925 -8.62005 -6.43429 -1.29042 -0.70617 -0.22065 0.20205 1.07310 1.09081 1.16858 1.37365 1.51351 1.53776 1.92866 2.04218 2.15298 2.65053 2.81739 2.89305 3.03908 3.22786 3.44042 3.75338 3.84377 3.88832 3.93434 4.04404 4.15761 4.40163 4.44909 4.45866 4.49359 4.77259 4.83670 5.07693 5.15111 5.54178 5.72556 6.10874 6.16586 6.37987 6.48724 6.82208 7.56986 8.57959 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.016227 B = 0.003006 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.132174 B = 9313.193045 C =10939.351443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.317 6.317 3 C 0.136 3.864 4 C -0.085 4.085 5 C -0.136 4.136 6 C 0.380 3.620 7 O -0.481 6.481 8 C -0.004 4.004 9 N 0.026 4.974 10 O -0.116 6.116 11 O -0.195 6.195 12 C -0.143 4.143 13 C 0.126 3.874 14 O -0.286 6.286 15 C 0.082 3.918 16 C 0.396 3.604 17 O -0.564 6.564 18 O -0.232 6.232 19 C -0.425 4.425 20 H 0.086 0.914 21 C 0.000 4.000 22 N -0.898 5.898 23 Si 1.020 2.980 24 H -0.259 1.259 25 H -0.259 1.259 26 H -0.262 1.262 27 H 0.090 0.910 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.226 0.774 31 H 0.198 0.802 32 H 0.161 0.839 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.888 8.108 -0.662 25.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.230 6.230 3 C 0.088 3.912 4 C -0.104 4.104 5 C -0.139 4.139 6 C 0.239 3.761 7 O -0.354 6.354 8 C -0.086 4.086 9 N 0.551 4.449 10 O -0.348 6.348 11 O -0.403 6.403 12 C -0.163 4.163 13 C 0.079 3.921 14 O -0.199 6.199 15 C 0.007 3.993 16 C 0.243 3.757 17 O -0.461 6.461 18 O -0.141 6.141 19 C -0.500 4.500 20 H 0.103 0.897 21 C -0.201 4.201 22 N -0.534 5.534 23 Si 0.838 3.162 24 H -0.183 1.183 25 H -0.183 1.183 26 H -0.187 1.187 27 H 0.109 0.891 28 H 0.132 0.868 29 H 0.107 0.893 30 H 0.243 0.757 31 H 0.213 0.787 32 H 0.179 0.821 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -23.795 7.379 -0.499 24.918 hybrid contribution 1.167 -0.300 0.016 1.205 sum -22.628 7.079 -0.482 23.714 Atomic orbital electron populations 1.23748 0.74417 1.06742 1.04244 1.86372 1.25138 1.24472 1.87032 1.18525 0.88173 0.87352 0.97164 1.21694 1.03195 0.86092 0.99403 1.21022 0.89494 0.99601 1.03761 1.25147 0.97710 0.83942 0.69338 1.90739 1.76937 1.32923 1.34785 1.20894 0.93340 0.81702 1.12663 1.43610 0.99317 1.02746 0.99203 1.94519 1.66364 1.43592 1.30282 1.94564 1.28869 1.84288 1.32615 1.20643 1.02290 0.88841 1.04515 1.18470 0.89719 0.84376 0.99564 1.86202 1.17948 1.27935 1.87812 1.21947 0.78038 0.92384 1.06944 1.23363 0.82652 0.91605 0.78082 1.90584 1.64449 1.40648 1.50439 1.83841 1.19816 1.33819 1.76579 1.21482 0.91525 0.81349 1.55630 0.89665 1.26583 0.94294 1.04936 0.94303 1.70062 1.04997 1.32412 1.45959 0.84592 0.77934 0.73982 0.79658 1.18318 1.18300 1.18651 0.89109 0.86810 0.89275 0.75712 0.78672 0.82121 0.85820 0.85728 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.81 113.37 1.11 1.12 16 2 O -0.32 -6.05 10.27 -79.51 -0.82 -6.87 16 3 C 0.14 2.50 6.69 22.52 0.15 2.65 16 4 C -0.09 -0.78 8.78 22.66 0.20 -0.58 16 5 C -0.14 -2.09 5.87 -20.15 -0.12 -2.21 16 6 C 0.38 4.63 11.33 70.08 0.79 5.42 16 7 O -0.48 -11.65 13.94 20.12 0.28 -11.37 16 8 C 0.00 -0.10 6.27 36.67 0.23 0.13 16 9 N 0.03 0.82 3.47 -45.76 -0.16 0.66 16 10 O -0.12 -3.77 16.40 26.22 0.43 -3.34 16 11 O -0.20 -6.71 19.17 18.89 0.36 -6.35 16 12 C -0.14 -3.53 8.83 22.30 0.20 -3.33 16 13 C 0.13 3.23 6.71 22.73 0.15 3.38 16 14 O -0.29 -9.71 9.43 -64.27 -0.61 -10.31 16 15 C 0.08 2.87 5.33 71.24 0.38 3.25 16 16 C 0.40 19.64 7.98 71.24 0.57 20.21 16 17 O -0.56 -31.40 15.74 27.21 0.43 -30.97 16 18 O -0.23 -13.33 9.75 14.91 0.15 -13.18 16 19 C -0.42 -25.33 9.64 67.94 0.66 -24.68 16 20 H 0.09 5.16 6.86 -2.91 -0.02 5.14 16 21 C 0.00 0.00 5.49 84.88 0.47 0.47 16 22 N -0.90 -51.97 13.67 21.62 0.30 -51.68 16 23 Si 1.02 42.46 29.55 68.60 2.03 44.49 16 24 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 25 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 26 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 27 H 0.09 0.00 7.66 -2.39 -0.02 -0.02 16 28 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.09 0.02 7.66 -2.39 -0.02 0.00 16 30 H 0.23 -0.71 6.28 -2.91 -0.02 -0.73 16 31 H 0.20 -0.42 8.06 -2.91 -0.02 -0.44 16 32 H 0.16 3.92 6.27 -2.91 -0.02 3.90 16 33 H 0.12 3.64 7.65 -2.39 -0.02 3.62 16 34 H 0.13 3.70 7.65 -2.39 -0.02 3.68 16 35 H 0.28 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -90.47 329.99 8.35 -82.12 By element: Atomic # 1 Polarization: -0.20 SS G_CDS: 1.18 Total: 0.98 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 4.79 Total: 5.81 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.14 Total: -51.02 kcal Atomic # 8 Polarization: -82.60 SS G_CDS: 0.22 Total: -82.38 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -90.47 8.35 -82.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730627428.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.377 kcal (2) G-P(sol) polarization free energy of solvation -90.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds