Wall clock time and date at job start Fri Apr 10 2020 14:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99966 * 2 1 4 4 H 1.48503 * 109.46945 * 269.99897 * 3 2 1 5 5 H 1.48504 * 109.47520 * 29.99801 * 3 2 1 6 6 H 1.48497 * 109.47188 * 149.99689 * 3 2 1 7 7 C 1.37874 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99928 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00116 * 0.02562 * 7 2 1 10 10 O 1.42901 * 113.01720 * 48.33723 * 9 7 2 11 11 C 1.53946 * 113.74034 * 180.02562 * 9 7 2 12 12 N 1.47580 * 86.24073 * 137.89610 * 11 9 7 13 13 S 1.65602 * 134.49407 * 155.42459 * 12 11 9 14 14 O 1.42101 * 106.40026 * 203.53835 * 13 12 11 15 15 O 1.42096 * 106.40177 * 336.45798 * 13 12 11 16 16 C 1.76199 * 107.21752 * 90.00076 * 13 12 11 17 17 C 1.38266 * 119.98147 * 90.00123 * 16 13 12 18 18 C 1.38292 * 120.04001 * 179.97438 * 17 16 13 19 19 C 1.37969 * 119.91995 * 359.97438 * 18 17 16 20 20 C 1.38592 * 120.04096 * 0.02562 * 19 18 17 21 21 C 1.37968 * 120.04060 * 359.74450 * 20 19 18 22 22 C 1.51082 * 107.27414 * 180.02562 * 20 19 18 23 23 O 1.43947 * 105.95582 * 342.31145 * 22 20 19 24 24 C 1.43941 * 104.94518 * 28.44453 * 23 22 20 25 25 C 1.47812 * 90.92375 * 335.45714 * 12 11 9 26 26 H 0.97003 * 119.99565 * 0.02562 * 1 2 3 27 27 H 0.96698 * 113.99808 * 311.65914 * 10 9 7 28 28 H 1.09002 * 113.76900 * 252.25313 * 11 9 7 29 29 H 1.09000 * 113.76969 * 23.53734 * 11 9 7 30 30 H 1.07999 * 119.97507 * 359.97438 * 17 16 13 31 31 H 1.08007 * 120.03586 * 180.02562 * 18 17 16 32 32 H 1.07998 * 120.04112 * 180.27673 * 21 20 19 33 33 H 1.09000 * 110.15393 * 223.19499 * 22 20 19 34 34 H 1.08994 * 110.21676 * 101.46902 * 22 20 19 35 35 H 1.09000 * 110.15146 * 212.42974 * 24 23 22 36 36 H 1.08998 * 110.21338 * 90.70983 * 24 23 22 37 37 H 1.08996 * 113.67199 * 270.23445 * 25 12 11 38 38 H 1.08996 * 113.93703 * 138.88096 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.2149 -2.5461 -0.9824 11 6 2.1616 -3.7405 0.0018 12 7 1.2226 -4.3082 0.9887 13 16 0.8107 -5.8449 1.4483 14 8 -0.4906 -5.7597 2.0129 15 8 1.1280 -6.6905 0.3512 16 6 1.8931 -6.3047 2.7603 17 6 1.5420 -6.0391 4.0710 18 6 2.3905 -6.3999 5.1017 19 6 3.5875 -7.0258 4.8206 20 6 3.9394 -7.2921 3.5069 21 6 3.0908 -6.9364 2.4788 22 6 5.2871 -7.9746 3.5330 23 8 5.8451 -7.6989 4.8309 24 6 4.7073 -7.5359 5.6972 25 6 0.7983 -2.9534 1.4001 26 1 -0.4849 0.8401 -0.0004 27 1 -0.3594 -1.7681 -0.9860 28 1 2.1770 -4.2750 -0.9480 29 1 3.1585 -3.5536 0.4008 30 1 0.6046 -5.5495 4.2898 31 1 2.1160 -6.1927 6.1256 32 1 3.3631 -7.1479 1.4553 33 1 5.9300 -7.5661 2.7533 34 1 5.1677 -9.0493 3.3960 35 1 4.9318 -6.8109 6.4796 36 1 4.4312 -8.4927 6.1404 37 1 1.3941 -2.5358 2.2116 38 1 -0.2745 -2.8576 1.5672 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527035147.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:26 Heat of formation + Delta-G solvation = -89.778692 kcal Electronic energy + Delta-G solvation = -25505.903126 eV Core-core repulsion = 21635.264889 eV Total energy + Delta-G solvation = -3870.638237 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.92925 -38.49857 -37.65023 -36.84225 -35.47607 -33.93710 -32.17919 -31.95437 -31.70480 -28.24654 -27.82528 -25.36641 -25.25496 -24.65428 -22.25483 -22.06782 -19.65590 -18.52458 -17.57237 -17.43934 -16.83659 -16.75164 -16.49634 -16.21231 -15.46438 -15.04937 -14.73887 -14.40725 -14.28667 -13.89322 -13.69646 -13.35188 -13.25018 -13.05381 -12.97050 -12.68550 -12.20087 -12.12335 -11.74943 -11.69979 -11.64785 -11.52217 -11.35288 -11.11730 -10.90203 -10.75431 -10.52602 -10.50119 -10.26758 -9.40353 -9.30291 -9.01185 -8.78046 -8.61632 -8.10180 -6.38072 -4.48915 0.45858 0.79333 1.01656 3.04560 3.15136 3.23384 3.25352 3.44567 3.55627 3.83228 4.13769 4.18453 4.19186 4.55834 4.61400 4.86723 4.95645 4.96179 5.00315 5.06331 5.18561 5.33027 5.37606 5.47065 5.65980 5.82696 5.86939 5.92510 5.98602 6.03729 6.29724 6.30041 6.33781 6.55178 6.63784 6.74317 6.97966 7.47062 7.65384 7.82634 8.54053 9.21952 9.50352 10.68104 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.015709 B = 0.003803 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.977877 B = 7361.588073 C = 8230.841489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.247 3.753 10 O -0.573 6.573 11 C 0.130 3.870 12 N -1.023 6.023 13 S 2.699 3.301 14 O -0.959 6.959 15 O -0.961 6.961 16 C -0.671 4.671 17 C -0.013 4.013 18 C -0.115 4.115 19 C -0.087 4.087 20 C -0.157 4.157 21 C 0.005 3.995 22 C 0.092 3.908 23 O -0.359 6.359 24 C 0.087 3.913 25 C 0.104 3.896 26 H 0.274 0.726 27 H 0.394 0.606 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.146 0.854 31 H 0.135 0.865 32 H 0.143 0.857 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.885 -11.165 9.809 16.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.090 0.910 9 C 0.202 3.798 10 O -0.385 6.385 11 C 0.005 3.995 12 N -0.864 5.864 13 S 2.790 3.210 14 O -0.949 6.949 15 O -0.952 6.952 16 C -0.754 4.754 17 C -0.032 4.032 18 C -0.134 4.134 19 C -0.088 4.088 20 C -0.158 4.158 21 C -0.014 4.014 22 C 0.016 3.984 23 O -0.278 6.278 24 C 0.010 3.990 25 C -0.021 4.021 26 H 0.084 0.916 27 H 0.249 0.751 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.164 0.836 31 H 0.153 0.847 32 H 0.160 0.840 33 H 0.120 0.880 34 H 0.098 0.902 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.519 -12.378 9.489 16.904 hybrid contribution 0.485 1.356 0.887 1.692 sum 7.004 -11.022 10.375 16.679 Atomic orbital electron populations 1.69326 1.06157 1.28202 1.50002 1.25080 0.95017 0.99847 0.93135 0.86342 0.79708 0.82042 0.78447 1.20264 1.20961 1.19637 1.21556 0.93926 0.89946 1.52114 0.91000 1.19822 0.85375 0.90673 0.83902 1.86040 1.46171 1.49035 1.57292 1.23118 0.92940 0.93502 0.89975 1.60245 1.55763 1.19454 1.50942 1.01852 0.73803 0.72291 0.73073 1.93543 1.35318 1.86366 1.79686 1.93531 1.85302 1.65628 1.50736 1.31660 1.13819 1.13837 1.16125 1.20984 0.98392 0.93132 0.90671 1.20512 0.93165 0.99755 0.99986 1.21339 0.95828 0.95971 0.95616 1.21115 0.98188 1.02116 0.94427 1.20114 0.90345 0.91592 0.99324 1.21773 0.90621 0.99248 0.86736 1.89099 1.27270 1.92539 1.18858 1.21850 0.83282 1.01018 0.92811 1.23971 1.00110 0.75685 1.02359 0.91582 0.75052 0.90563 0.89881 0.83604 0.84735 0.83964 0.87977 0.90196 0.87948 0.89961 0.90409 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.48 11.08 55.43 0.61 -21.86 16 2 C 0.07 1.76 5.39 -17.82 -0.10 1.66 16 3 Si 0.91 19.10 29.54 -169.99 -5.02 14.08 16 4 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.54 -13.06 8.62 -34.44 -0.30 -13.35 16 8 H 0.07 1.68 7.81 -52.48 -0.41 1.27 16 9 C 0.25 5.76 1.45 -90.83 -0.13 5.63 16 10 O -0.57 -14.55 13.50 -35.23 -0.48 -15.03 16 11 C 0.13 2.58 8.35 -2.97 -0.02 2.56 16 12 N -1.02 -20.09 4.13 -117.78 -0.49 -20.58 16 13 S 2.70 49.49 6.24 -107.50 -0.67 48.82 16 14 O -0.96 -19.59 17.26 -57.17 -0.99 -20.57 16 15 O -0.96 -19.29 17.25 -57.17 -0.99 -20.27 16 16 C -0.67 -10.23 5.98 -39.55 -0.24 -10.47 16 17 C -0.01 -0.17 9.52 -39.55 -0.38 -0.55 16 18 C -0.12 -1.32 10.04 -39.66 -0.40 -1.72 16 19 C -0.09 -1.00 6.32 -104.40 -0.66 -1.66 16 20 C -0.16 -1.94 6.32 -104.40 -0.66 -2.60 16 21 C 0.01 0.07 9.52 -39.66 -0.38 -0.30 16 22 C 0.09 0.93 7.63 36.19 0.28 1.20 16 23 O -0.36 -3.98 11.72 -35.23 -0.41 -4.39 16 24 C 0.09 0.79 7.63 36.19 0.28 1.07 16 25 C 0.10 2.21 8.37 -2.85 -0.02 2.18 16 26 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 27 H 0.39 10.14 6.42 45.56 0.29 10.43 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.08 1.45 8.09 -51.93 -0.42 1.03 16 30 H 0.15 1.85 7.62 -52.49 -0.40 1.45 16 31 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 32 H 0.14 1.81 7.61 -52.49 -0.40 1.41 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 1.53 8.09 -51.93 -0.42 1.11 16 38 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 338.04 15.07 5.09 5.09 Total: -1.00 -30.37 338.04 -9.91 -40.28 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -3.85 Total: 10.78 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -2.73 Total: -16.35 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.13 Total: -42.44 kcal Atomic # 8 Polarization: -57.41 SS G_CDS: -2.86 Total: -60.27 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Atomic # 16 Polarization: 49.49 SS G_CDS: -0.67 Total: 48.82 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.37 -9.91 -40.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527035147.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.497 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds