Wall clock time and date at job start Fri Apr 10 2020 14:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42904 * 112.94794 * 48.40868 * 9 7 2 11 11 C 1.53953 * 113.74304 * 276.67772 * 9 7 2 12 12 N 1.47582 * 86.11558 * 222.04955 * 11 9 7 13 13 S 1.65599 * 134.49014 * 204.63909 * 12 11 9 14 14 O 1.42091 * 106.40423 * 23.54017 * 13 12 11 15 15 O 1.42105 * 106.40204 * 156.45870 * 13 12 11 16 16 C 1.76197 * 107.21918 * 269.99689 * 13 12 11 17 17 C 1.37973 * 119.87958 * 115.00194 * 16 13 12 18 18 C 1.38246 * 120.35158 * 180.02562 * 17 16 13 19 19 C 1.38402 * 119.76390 * 0.20336 * 18 17 16 20 20 C 1.37692 * 119.98097 * 359.92961 * 19 18 17 21 21 C 1.38936 * 120.78039 * 359.41864 * 20 19 18 22 22 O 1.36123 * 111.22049 * 180.83215 * 21 20 19 23 23 C 1.43774 * 109.30470 * 341.23835 * 22 21 20 24 24 C 1.51638 * 132.18391 * 179.41210 * 20 19 18 25 25 C 1.47581 * 91.01664 * 24.63711 * 12 11 9 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 0.96699 * 113.99284 * 309.66953 * 10 9 7 28 28 H 1.09002 * 113.76657 * 336.34627 * 11 9 7 29 29 H 1.08991 * 113.76978 * 107.74459 * 11 9 7 30 30 H 1.07997 * 119.82892 * 0.02562 * 17 16 13 31 31 H 1.07992 * 120.11838 * 180.22231 * 18 17 16 32 32 H 1.08004 * 120.00633 * 179.90703 * 19 18 17 33 33 H 1.08999 * 110.74972 * 269.25297 * 23 22 21 34 34 H 1.09000 * 110.90494 * 145.97684 * 23 22 21 35 35 H 1.09008 * 110.93916 * 313.67416 * 24 20 19 36 36 H 1.09004 * 110.93925 * 77.30737 * 24 20 19 37 37 H 1.09001 * 113.77016 * 221.05654 * 25 12 11 38 38 H 1.09005 * 113.86980 * 89.67729 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2156 -2.5447 -0.9843 11 6 0.7997 -2.9543 1.3992 12 7 1.2211 -4.3068 0.9853 13 16 0.8054 -5.8429 1.4436 14 8 -0.4956 -5.7551 2.0081 15 8 1.1209 -6.6884 0.3458 16 6 1.8867 -6.3064 2.7553 17 6 1.3783 -6.5322 4.0179 18 6 2.2179 -6.8958 5.0543 19 6 3.5760 -7.0296 4.8236 20 6 4.0859 -6.8021 3.5650 21 6 3.2503 -6.4493 2.5125 22 8 3.9531 -6.2900 1.3576 23 6 5.3442 -6.1039 1.6696 24 6 5.4973 -6.8553 3.0132 25 6 2.1615 -3.7405 -0.0011 26 1 -0.4850 0.8401 0.0004 27 1 -0.3764 -1.7802 -0.9678 28 1 1.3966 -2.5373 2.2104 29 1 -0.2731 -2.8605 1.5670 30 1 0.3189 -6.4243 4.1976 31 1 1.8155 -7.0750 6.0403 32 1 4.2357 -7.3120 5.6308 33 1 5.5746 -5.0454 1.7906 34 1 5.9778 -6.5503 0.9031 35 1 6.1932 -6.3364 3.6726 36 1 5.8132 -7.8857 2.8501 37 1 2.1758 -4.2745 -0.9513 38 1 3.1590 -3.5540 0.3970 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581481909.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:28 Heat of formation + Delta-G solvation = -82.241191 kcal Electronic energy + Delta-G solvation = -26285.704602 eV Core-core repulsion = 22415.393215 eV Total energy + Delta-G solvation = -3870.311387 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.28717 -38.41394 -37.64060 -36.57989 -35.30303 -33.84970 -33.00063 -32.12187 -30.38955 -29.43528 -27.72648 -25.22538 -24.60458 -23.88236 -22.75728 -22.10321 -19.55334 -18.42616 -17.67949 -17.49814 -17.14729 -16.60852 -16.40804 -16.14141 -15.38131 -15.11856 -14.88823 -14.22786 -13.93494 -13.61714 -13.53853 -13.30342 -13.12576 -13.00835 -12.80847 -12.34420 -12.06914 -12.04494 -11.68565 -11.59070 -11.54814 -11.49960 -11.41755 -11.10010 -11.06411 -10.77704 -10.50276 -10.44621 -10.20849 -9.44603 -9.24435 -8.71240 -8.52454 -8.39334 -7.99601 -6.32422 -4.42897 0.67983 0.97260 1.13820 2.97786 3.18516 3.24825 3.25498 3.27349 3.56760 4.11858 4.21220 4.26550 4.31570 4.57949 4.75216 4.82378 4.91875 4.93395 5.11797 5.22986 5.26442 5.45914 5.49069 5.50790 5.70648 5.89610 5.99175 6.09835 6.13576 6.17048 6.35728 6.41672 6.46565 6.77609 6.82827 6.89736 7.06794 7.56909 7.71275 7.90529 8.59176 9.27317 9.57401 10.73891 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.015506 B = 0.004586 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.341239 B = 6103.655600 C = 6764.123703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.070 0.930 9 C 0.246 3.754 10 O -0.572 6.572 11 C 0.104 3.896 12 N -1.020 6.020 13 S 2.700 3.300 14 O -0.964 6.964 15 O -0.956 6.956 16 C -0.694 4.694 17 C 0.005 3.995 18 C -0.171 4.171 19 C -0.024 4.024 20 C -0.200 4.200 21 C 0.205 3.795 22 O -0.287 6.287 23 C 0.047 3.953 24 C -0.108 4.108 25 C 0.138 3.862 26 H 0.274 0.726 27 H 0.392 0.608 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.150 0.850 31 H 0.136 0.864 32 H 0.129 0.871 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.773 -10.269 9.589 17.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.088 0.912 9 C 0.201 3.799 10 O -0.385 6.385 11 C -0.021 4.021 12 N -0.861 5.861 13 S 2.791 3.209 14 O -0.955 6.955 15 O -0.946 6.946 16 C -0.778 4.778 17 C -0.014 4.014 18 C -0.190 4.190 19 C -0.043 4.043 20 C -0.202 4.202 21 C 0.157 3.843 22 O -0.200 6.200 23 C -0.028 4.028 24 C -0.145 4.145 25 C 0.013 3.987 26 H 0.084 0.916 27 H 0.248 0.752 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.167 0.833 31 H 0.154 0.846 32 H 0.147 0.853 33 H 0.104 0.896 34 H 0.131 0.869 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.128 -11.473 8.933 17.168 hybrid contribution 0.974 1.307 1.105 1.969 sum 10.103 -10.166 10.039 17.498 Atomic orbital electron populations 1.69324 1.06151 1.28214 1.50021 1.25077 0.95002 0.99760 0.93241 0.86409 0.79485 0.81846 0.78816 1.21037 1.20063 1.19910 1.21515 0.93803 0.90037 1.52062 0.91180 1.19860 0.85448 0.90695 0.83879 1.86050 1.45204 1.50558 1.56660 1.23886 0.99988 0.76076 1.02191 1.60146 1.55674 1.19352 1.50907 1.01772 0.73593 0.72416 0.73128 1.93515 1.35584 1.86551 1.79810 1.93551 1.85141 1.65380 1.50541 1.30546 1.07187 1.22323 1.17781 1.20798 1.00770 0.90086 0.89704 1.21143 0.93147 1.05028 0.99680 1.20518 0.95334 0.93694 0.94715 1.20852 0.95807 1.08365 0.95130 1.18857 0.91299 0.88786 0.85335 1.86996 1.20227 1.86166 1.26575 1.23997 0.80041 1.01645 0.97073 1.21800 0.93945 1.02362 0.96350 1.23008 0.92659 0.93076 0.89968 0.91589 0.75194 0.90606 0.90918 0.83272 0.84649 0.85277 0.89560 0.86878 0.88767 0.89010 0.90751 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.00 11.09 55.43 0.61 -22.39 16 2 C 0.07 1.79 5.40 -17.82 -0.10 1.70 16 3 Si 0.91 19.39 29.54 -169.99 -5.02 14.37 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.54 -13.37 8.62 -34.44 -0.30 -13.66 16 8 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.25 5.98 1.44 -90.84 -0.13 5.85 16 10 O -0.57 -15.08 13.48 -35.23 -0.48 -15.55 16 11 C 0.10 2.34 8.37 -2.97 -0.02 2.31 16 12 N -1.02 -21.79 4.11 -118.69 -0.49 -22.28 16 13 S 2.70 55.33 6.13 -107.50 -0.66 54.67 16 14 O -0.96 -21.06 16.92 -57.17 -0.97 -22.03 16 15 O -0.96 -21.80 17.87 -57.17 -1.02 -22.82 16 16 C -0.69 -11.93 5.93 -39.31 -0.23 -12.16 16 17 C 0.01 0.08 9.52 -39.68 -0.38 -0.30 16 18 C -0.17 -1.98 10.07 -39.52 -0.40 -2.37 16 19 C -0.02 -0.27 10.03 -39.72 -0.40 -0.66 16 20 C -0.20 -2.53 6.27 -104.10 -0.65 -3.18 16 21 C 0.21 3.30 6.69 -38.95 -0.26 3.04 16 22 O -0.29 -4.54 11.01 -20.13 -0.22 -4.77 16 23 C 0.05 0.49 8.01 38.05 0.30 0.79 16 24 C -0.11 -0.98 7.11 -26.53 -0.19 -1.16 16 25 C 0.14 2.96 8.36 -2.97 -0.02 2.93 16 26 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 27 H 0.39 10.40 6.46 45.56 0.29 10.70 16 28 H 0.08 1.59 8.09 -51.93 -0.42 1.17 16 29 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 30 H 0.15 2.01 7.30 -52.49 -0.38 1.62 16 31 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.08 1.51 8.09 -51.93 -0.42 1.09 16 LS Contribution 338.32 15.07 5.10 5.10 Total: -1.00 -32.15 338.32 -9.78 -41.93 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -3.86 Total: 10.65 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -2.78 Total: -16.88 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 0.13 Total: -44.67 kcal Atomic # 8 Polarization: -62.48 SS G_CDS: -2.69 Total: -65.17 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Atomic # 16 Polarization: 55.33 SS G_CDS: -0.66 Total: 54.67 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.15 -9.78 -41.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581481909.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.315 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds